Clone RE49668 Report

Search the DGRC for RE49668

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:496
Well:68
Vector:pFlc-1
Associated Gene/TranscriptCG31323-RA
Protein status:RE49668.pep: gold
Preliminary Size:924
Sequenced Size:3498

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG31323 2001-12-17 Blastp of sequenced clone
CG14558 2002-01-01 Sim4 clustering to Release 2
CG31323 2008-04-29 Release 5.5 accounting
CG31323 2008-08-15 Release 5.9 accounting
CG31323 2008-12-18 5.12 accounting

Clone Sequence Records

RE49668.complete Sequence

3498 bp (3498 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071413

> RE49668.complete
AGCTCTCATGCGGCTTTCATCCGAACCGCACCGTATCAGTTCGCAACGGA
ATTTTGCCAAAAAGATACTTTTGAAACTACGTAACGAACTTCAAAGCGAC
ACGTGGGTGTGAAAAAAGGCTATAAAAAAAAAACAGCTTCAAATTGCAGT
GTTCGTTAAATTATAAGAAATCAGGCGAAATATCTAAATGATGGCGAAGT
GAAATGAATTCCGAGGAATGTCCGCAATTGGTCAACCTGTGAGTCCAGCG
AATCCCGTGTGAGTGCTGTGCGTGCCCAGACGATGGCGGTGGGCAGTTCA
ATTATGGAGACCGTCGCTATTTTGGCCCTGCTGCTTGGCCTGTTCATTCG
AAGTGGCTACTGCATAGACTGTTTCAAATGCGTGTCATACAATGGTGCTA
ACAAGGCCTGCGACGATCCCTTTCACAACAACTACTCAACGGCCATTTTG
GAGTCGCCCTGCATGGGCGGCCGGAAGGGGCGTGACGGCCTGTTTCCGGC
CACCGCTTGCATCAAGATCGCCGGCTATTACGATGGAACTGGCGAGACGA
TAACGGTGAGAGGTTGCGCCCTGGACAGCGGCACCCTGACCACCGACACA
GAGATTATAAGAATGTCGCATTGCGGAAAGTTCTACTACGATGACAAGTA
CGTGCACGGGTGCTTGCAGAGCTGCAGCGATGCGGATGCCTGCAACTCGG
CCAGGAGGCAGGGCGCAAGTCCCGCAGACCTGGAGTCACTGATGAGGCAC
CTGCTCAGTCTGGTCGTGTTCCTATTGGCTGCCAGCAGGTAGCATAGTGG
ATATCTGTAGGTACCGCATCCGGAGCAGAAGAGGCAGGCGGAAATATGGC
TGCAAGGGAAGTAAGGCAGCCGGGAAGGCATTCAAGTCGTCTTGGATGCA
CGTGGAAATCCTTTTCTTTTCCTTCGAATCTCTCTGTGTCTAGGATCGCA
ATCGCACCCAAATGTAAACGCACTCGAGCTGCTGCAGCAAGGACACGCTC
GGAAACACACTCTCTCTTACACACAATAACATTATGGAATTCATCAAGCA
ATTATGTGATTTTTAAGCGAATACTTAACAACTATCAAACAATAATTGAT
GAGCGCGAAAGGAAACTATTTAGATGCTAAGCATTCGAGTGGCGAAAATC
AAAGAAAAACACTGCAAACCAAATTCAAATTCTAATTGCAATTATTTTTA
GCTCCTAAGAAGGAATCTAGACTTTAAACGCTGTCGCTTAGTGAAAGGCA
GGAATGGTTTACGATTTATATACGATGTGTTTTACCTTGGCATAAGTAAG
CATTTTTCACCTCTCTAGATGAGTATTGTACATATACAAAAACAATTTAT
CTATTTGTTAAACGAGTGCTGAATTTTGGGCAGATTATAAATAGTTGTGT
AAATGGATTAGTGAGTAAAATTAGCAACGAAAACTGCGAGCTACAAAGAG
GGAGGAAAATTACTTTTTTTTGGGAGATTGATGTAATAACGTCATCTTTA
TTTAAACAGTTTTGTTTTACATTATCAAACCACTATTAGATTACTTGGTT
TACTCGGAACTGTGTGAACTATTTACTATCAAATATTACTTCTATTAAGT
CCTAAATCAAGCCATAAATGCCGGTCATAAATGACACAATTCGTTGCTAT
ATAGACTTCTGAATTTAGACAGCCAACTACTAACACTTACCGCCTTACCA
GTCTGGTGCGGTTGATTCACCGGAAGATTGGTTATCATGTCCGGATAACC
TGATAGGGTATCGGTTACCTAGGTGTTGCCTAGCCGCCGCCAAAAATAAC
TATCGCAATTGCTTAGTACATTCAAGCAGCTCAATCGAAATGGACGGTAA
GCACTGGCGCATTCCCCTTTTCCGTTCGGATCCTCCAATTTAGCGGGATA
ATTTCGCTGACTTGCAGGTCACAGCTGGCTTCACTTCAGCAACGGAGCAA
TCCCCCAGGCAGCCGTTGTGGCTGGTCACGATTCCGATGGCGACACCATC
TTCATTGGCCGCGCCTTCTACTGCAACGACATGCTGCCGGCCAAGATTAT
CCCCAACAAGGGCAAGGCCTACGTGGCGTATGCCAACCAGGAGGTGGAGC
TGGAGAACTACGAGGTACTCAGCGGCTTCAACTACGAGTGGCTGCCGGCC
GAGAACGGAGAGGTGCCTCCCGGCGCCGTCAAGGTCGGCCAGAATGTCGA
CGGAGAGACCTTGTACGCCGGAAGGGGCTACCATGCCGGCAGTTTGACCG
TGGGCAAGGTGCATCCGTCCCACGGCTGCCTGTACATTCCCTACGATTCC
GAGGAGGTTAAGATATTCGCCTACGAGGTTCTGTCCCGTCGCTTGGAGGC
GAGATAGGTGATCCATTTTCAGTTATTGCCTGTTAATCACAAATAAATTC
GACACTTTTTGTAGACGCTCGTGTGTTGTTATCTCCATTTGGTGATCATA
AAACTTCCTTATCGTGCAAAGATTAATTTCAAACATAACTAAAAATAATA
GAGTTGATAGCTTGAGAAATACGTGGTTATTATAATGTATTGTAGATGGT
ATTGGTTTTTCAGACTTCAACTTGTGCTCGCAGTTTTCGTCCATACCCCT
TTTATGCAGGAAAAAGTTATAAGTTAACAAAACCAAATATGACCACAGTG
AAGCCACTAATTAACGTCTAAGTTGAAAACTCTCTTAATTACGCGATGCC
TAAATACTTGATTGTAAAATCGAGCTAAATTTTCATATGGATATGGCGAA
CCAATAGGACCAAACTAAATAAAACGAATACTATAACGAATGGGTCGGAG
TCCACGGCAATGACATTCGATATGCATCGAATTCTAGTTTAAATTGTTTA
TGGTTCGCATGTCGGTACTTCATTTTTCGGACTAAGCGAGCTTGCAATGG
TTTCCGCAAATAAAAATCAACAACAACTATGTATAAACAAGTGAAGAAGT
TTTGATAGAACGCAACGGTTTTTGATCGGTAGCAGACAGGCAACACATCA
AAATCAGGCAATTCGCATTTTCTCTCTGCTGAAATCGCTTGCTTGCCACG
CAACTAAACGCAAACTAATCGAAAGCAAACACAATACGCACTTATTGGCT
ATAACGGCTCCCCGGCTAAGGGCCATTGAATTCTTCAACTCTCTAACACA
CAATGAACGACCAAGCAAAGTTTGTAAAAATAACACAAGAGTACATTAAA
CGTTTCATGGCAAGGCGAATGCCAAACATTTTTGAATGCAAATGTATCTA
GAATTTAAGGAGATCTTTATACATATACAATTGAGGCGGCAGAGCGATGG
ATTAACGATAATTAGATAAACTAGATAACGACGCTACTTGAACTAATCAA
ATTGAATTGAAAATCGAAATTGAATCTGTTTACCCTGCAATTGAATGTGT
GCGTACAACTTTTTCTAGTGCAACATTTTGAAGCATTACGAACTAAACTA
TCAGCATTTCTGAATAAAAAACTGCATACATATATTGAAAAAAAAAAA

RE49668.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-RA 3488 CG31323-RA 5..3488 4..3487 17405 99.9 Plus
CG31086-RA 1054 CG31086-RA 416..1054 1917..2555 3195 100 Plus
CG31086-RA 1054 CG31086-RA 1..418 1431..1848 2090 100 Plus
CG6073-RA 1608 CG6073-RA 1269..1608 3490..3151 1700 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:22:30
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 22007513..22010343 648..3487 13790 99.1 Plus
chrX 22417052 chrX 13452746..13453118 1962..2334 1055 85.5 Plus
chr3R 27901430 chr3R 22007089..22007266 355..532 890 100 Plus
chr3R 27901430 chr3R 21993889..21994069 4..182 825 98.3 Plus
chr3R 27901430 chr3R 22006844..22007010 190..356 805 98.8 Plus
chr3R 27901430 chr3R 22007334..22007452 532..650 595 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:00 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:22:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 26184468..26187310 648..3490 14200 100 Plus
X 23542271 X 13562010..13562382 1962..2334 1055 85.5 Plus
3R 32079331 3R 26170852..26171038 4..190 935 100 Plus
3R 32079331 3R 26184044..26184221 355..532 890 100 Plus
3R 32079331 3R 26183799..26183965 190..356 835 100 Plus
3R 32079331 3R 26184289..26184407 532..650 595 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 25925299..25928141 648..3490 14200 99.9 Plus
X 23527363 X 13570108..13570480 1962..2334 1055 85.5 Plus
3R 31820162 3R 25911683..25911869 4..190 935 100 Plus
3R 31820162 3R 25924875..25925052 355..532 890 100 Plus
3R 31820162 3R 25924630..25924796 190..356 835 100 Plus
3R 31820162 3R 25925120..25925238 532..650 595 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:22:28 has no hits.

RE49668.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:23:25 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 21993886..21994080 1..190 96 -> Plus
chr3R 22006845..22007009 191..355 98 -> Plus
chr3R 22007090..22007266 356..532 100 -> Plus
chr3R 22007335..22007449 533..647 100 -> Plus
chr3R 22007513..22010343 648..3487 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:48:27 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 283..792 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:07 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 283..792 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:25:59 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 283..792 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:23:52 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 283..792 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:56:33 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..510 283..792 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:48:27 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..1527 1..1527 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:07 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..3487 1..3487 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:25:59 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 3..3489 1..3487 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:23:52 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 1..1527 1..1527 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:56:33 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
CG31323-RA 3..3489 1..3487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:25 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26170849..26171038 1..190 99 -> Plus
3R 26183800..26183964 191..355 100 -> Plus
3R 26184045..26184221 356..532 100 -> Plus
3R 26184290..26184404 533..647 100 -> Plus
3R 26184468..26187307 648..3487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:25 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26170849..26171038 1..190 99 -> Plus
3R 26183800..26183964 191..355 100 -> Plus
3R 26184045..26184221 356..532 100 -> Plus
3R 26184290..26184404 533..647 100 -> Plus
3R 26184468..26187307 648..3487 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:25 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 26170849..26171038 1..190 99 -> Plus
3R 26183800..26183964 191..355 100 -> Plus
3R 26184045..26184221 356..532 100 -> Plus
3R 26184290..26184404 533..647 100 -> Plus
3R 26184468..26187307 648..3487 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:25:59 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 21996571..21996760 1..190 99 -> Plus
arm_3R 22009522..22009686 191..355 100 -> Plus
arm_3R 22009767..22009943 356..532 100 -> Plus
arm_3R 22010012..22010126 533..647 100 -> Plus
arm_3R 22010190..22013029 648..3487 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:58:59 Download gff for RE49668.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25925299..25928138 648..3487 99   Plus
3R 25911680..25911869 1..190 99 -> Plus
3R 25924631..25924795 191..355 100 -> Plus
3R 25924876..25925052 356..532 100 -> Plus
3R 25925121..25925235 533..647 100 -> Plus

RE49668.pep Sequence

Translation from 282 to 791

> RE49668.pep
MAVGSSIMETVAILALLLGLFIRSGYCIDCFKCVSYNGANKACDDPFHNN
YSTAILESPCMGGRKGRDGLFPATACIKIAGYYDGTGETITVRGCALDSG
TLTTDTEIIRMSHCGKFYYDDKYVHGCLQSCSDADACNSARRQGASPADL
ESLMRHLLSLVVFLLAASR*

RE49668.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16763-PA 169 GF16763-PA 1..156 1..156 777 93.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:08:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG11467-PA 169 GG11467-PA 1..169 1..169 873 98.2 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:08:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19467-PA 160 GH19467-PA 1..145 1..151 656 83.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:24:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PB 169 CG31323-PB 1..169 1..169 898 100 Plus
CG31323-PA 169 CG31323-PA 1..169 1..169 898 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24702-PA 161 GI24702-PA 1..146 1..151 613 80.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:08:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21833-PA 169 GL21833-PA 1..169 1..169 694 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16181-PA 169 GA16181-PA 1..169 1..169 694 80 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:08:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10312-PA 162 GM10312-PA 1..162 8..169 854 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:08:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD21273-PA 164 GD21273-PA 1..164 1..164 866 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23920-PA 160 GJ23920-PA 1..147 1..153 640 84.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:08:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13295-PA 173 GK13295-PA 8..159 6..156 649 82.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE23658-PA 169 GE23658-PA 1..169 1..169 878 98.8 Plus

RE49668.hyp Sequence

Translation from 282 to 791

> RE49668.hyp
MAVGSSIMETVAILALLLGLFIRSGYCIDCFKCVSYNGANKACDDPFHNN
YSTAILESPCMGGRKGRDGLFPATACIKIAGYYDGTGETITVRGCALDSG
TLTTDTEIIRMSHCGKFYYDDKYVHGCLQSCSDADACNSARRQGASPADL
ESLMRHLLSLVVFLLAASR*

RE49668.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:35:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG31323-PB 169 CG31323-PB 1..169 1..169 898 100 Plus
CG31323-PA 169 CG31323-PA 1..169 1..169 898 100 Plus