Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE49731.complete Sequence
1034 bp (1034 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071414
> RE49731.complete
GGTAACTCACGACTCGCAACCAAACAGCTTTTTGTTTACCAAATTTTTAA
TTTTGTCTTTGCGAAGGGAAATTTAATTACATACGCAATGTTTGCGGCTA
AGCGAGTAAGGGCCCGTGCGAAGAACTTCACCATTGAGGAGGAGGAGATC
CTGGAGAACCTGATCCTGGCGCATCGCGACGTGATCCGCAACAAGCAGAA
GGATCCGGCCATTTGGAGGAAGAAATCGGAGGCGTGGAAGCAAATTGAGG
CGGACTTCGCCATTCAGACCGGAATAGAGCGTTCTTGGCAGGCTCTGCGA
GAGAAGTACACCAACAACCTGCGGATGATGCGAAAGAACGGAACACTGAG
TGACGAGGAGGCAAAGACTGACAATGCATCAGATTCGGTGCAGAATTTGT
CCATTTCGGGAGTTTCTTCGCTGGCTGCAGCTGCTGATAATGAAGAAAGT
AGTACCTATTTCGAATCGGAATTGAACCGAAAAAGCCTCAGAAGCGCCTC
TACCGAAGTCAAGCTCGTGCCGAATAACTCAAGCTACTCAGTTGACAGAC
CAAACTACTCAGCTCTGAATGTAAATGAAGAGTCAGTCGATGTGAGCTCA
GAAGAGGATGCCACGAATACCCTGAAGGATGAAAAAGTCGTTCTGATCAG
GCTGCAACAGGAGTACTATCGATGCGAAAACGCCCGGGCAGCCGAGAAGC
ACAAGCTTGAGATGGAGAAGCAGAAATACGAGCTGGAGCAGCGAAAGGTG
GAGCTGCGCAATATGCGCCTGAAAAACGAACTTCTCGAAGCGGAAATACT
CGAAAAACGACGCAAAGTCGCGCAAAGCAAGGCTTCATCCTAAGGAATTG
CTAGCTAGGATAAGTTAATTTATTCTTGTCTTCATAATGTCAGTGCTCTT
CAGTAATTACTATAGTCCTAGTTAAACAAAAGATTATCGAAAGAAACTCA
TGTACACTCCTTGATTTTTGAAACCAGAAGCTAACAATTACATCTTCAAA
AGATTTAATAATGTCTGTCAAAAAAAAAAAAAAA
RE49731.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 19:41:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14352-RA | 1036 | CG14352-RA | 14..1032 | 4..1022 | 5080 | 99.9 | Plus |
RFeSP-RB | 1088 | RFeSP-RB | 1004..1088 | 1022..938 | 410 | 98.8 | Minus |
RFeSP.a | 1092 | RFeSP.a | 1008..1092 | 1022..938 | 410 | 98.8 | Minus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr2L | 23010047 | chr2L | 1611886..1612456 | 449..1019 | 2795 | 99.3 | Plus |
chr2L | 23010047 | chr2L | 1611304..1611750 | 4..450 | 2235 | 100 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:10:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1612006..1612579 | 449..1022 | 2855 | 99.8 | Plus |
2L | 23513712 | 2L | 1611424..1611870 | 4..450 | 2235 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1612006..1612579 | 449..1022 | 2855 | 99.8 | Plus |
2L | 23513712 | 2L | 1611424..1611870 | 4..450 | 2235 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 14:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
mdg3 | 5519 | mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). | 577..709 | 708..837 | 117 | 58.5 | Plus |
RE49731.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:11:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr2L | 1611301..1611748 | 1..448 | 99 | -> | Plus |
chr2L | 1611886..1612456 | 449..1019 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:20 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..756 | 88..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:50 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..756 | 88..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:54:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..756 | 88..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:18 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..756 | 88..843 | 100 | | Plus |
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:38 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..756 | 88..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:17 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..1019 | 1..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:49 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..1019 | 1..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:54:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 12..1030 | 1..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:18 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 1..1019 | 1..1019 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:38 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14352-RA | 12..1030 | 1..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1611421..1611868 | 1..448 | 99 | -> | Plus |
2L | 1612006..1612576 | 449..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1611421..1611868 | 1..448 | 99 | -> | Plus |
2L | 1612006..1612576 | 449..1019 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1611421..1611868 | 1..448 | 99 | -> | Plus |
2L | 1612006..1612576 | 449..1019 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:54:28 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1611421..1611868 | 1..448 | 99 | -> | Plus |
arm_2L | 1612006..1612576 | 449..1019 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:49 Download gff for
RE49731.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1611421..1611868 | 1..448 | 99 | -> | Plus |
2L | 1612006..1612576 | 449..1019 | 99 | | Plus |
RE49731.hyp Sequence
Translation from 0 to 842
> RE49731.hyp
GNSRLATKQLFVYQIFNFVFAKGNLITYAMFAAKRVRARAKNFTIEEEEI
LENLILAHRDVIRNKQKDPAIWRKKSEAWKQIEADFAIQTGIERSWQALR
EKYTNNLRMMRKNGTLSDEEAKTDNASDSVQNLSISGVSSLAAAADNEES
STYFESELNRKSLRSASTEVKLVPNNSSYSVDRPNYSALNVNEESVDVSS
EEDATNTLKDEKVVLIRLQQEYYRCENARAAEKHKLEMEKQKYELEQRKV
ELRNMRLKNELLEAEILEKRRKVAQSKASS*
RE49731.hyp Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14352-PA | 251 | CG14352-PA | 1..251 | 30..280 | 1243 | 100 | Plus |
RE49731.pep Sequence
Translation from 87 to 842
> RE49731.pep
MFAAKRVRARAKNFTIEEEEILENLILAHRDVIRNKQKDPAIWRKKSEAW
KQIEADFAIQTGIERSWQALREKYTNNLRMMRKNGTLSDEEAKTDNASDS
VQNLSISGVSSLAAAADNEESSTYFESELNRKSLRSASTEVKLVPNNSSY
SVDRPNYSALNVNEESVDVSSEEDATNTLKDEKVVLIRLQQEYYRCENAR
AAEKHKLEMEKQKYELEQRKVELRNMRLKNELLEAEILEKRRKVAQSKAS
S*
RE49731.pep Blast Records
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:53:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dere\GG24799-PA | 250 | GG24799-PA | 1..250 | 1..251 | 912 | 77 | Plus |
Dere\GG14026-PA | 237 | GG14026-PA | 5..229 | 8..246 | 285 | 33.6 | Plus |
Dere\GG13197-PA | 203 | GG13197-PA | 5..200 | 29..244 | 143 | 23.7 | Plus |
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dgri\GH18463-PA | 264 | GH18463-PA | 7..229 | 8..244 | 242 | 30.9 | Plus |
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14352-PA | 251 | CG14352-PA | 1..251 | 1..251 | 1243 | 100 | Plus |
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:53:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmoj\GI24042-PA | 235 | GI24042-PA | 7..233 | 8..244 | 282 | 32 | Plus |
Dmoj\GI17315-PA | 635 | GI17315-PA | 60..312 | 6..237 | 226 | 29 | Plus |
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:53:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dper\GL15755-PA | 176 | GL15755-PA | 7..163 | 8..231 | 234 | 31.2 | Plus |
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM16825-PA | 251 | GM16825-PA | 1..251 | 1..251 | 1060 | 87.6 | Plus |
Dsec\GM24861-PA | 224 | GM24861-PA | 5..222 | 8..246 | 246 | 33.2 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD23105-PA | 251 | GD23105-PA | 1..251 | 1..251 | 1060 | 86.9 | Plus |
Dsim\GD12913-PA | 123 | GD12913-PA | 5..101 | 8..107 | 148 | 38 | Plus |
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:53:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\GJ15833-PA | 300 | GJ15833-PA | 41..290 | 6..237 | 250 | 29.3 | Plus |
Dvir\GJ23671-PA | 436 | GJ23671-PA | 7..78 | 8..79 | 172 | 41.7 | Plus |
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:53:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\GE17648-PA | 253 | GE17648-PA | 1..253 | 1..251 | 948 | 77.9 | Plus |
Dyak\GE21229-PA | 271 | GE21229-PA | 1..257 | 1..246 | 294 | 34.8 | Plus |