Clone RE49731 Report

Search the DGRC for RE49731

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:497
Well:31
Vector:pFlc-1
Associated Gene/TranscriptCG14352-RA
Protein status:RE49731.pep: gold
Preliminary Size:756
Sequenced Size:1034

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14352 2001-12-14 Blastp of sequenced clone
CG14352 2002-01-01 Sim4 clustering to Release 2
CG14352 2003-01-01 Sim4 clustering to Release 3
CG14352 2008-04-29 Release 5.5 accounting
CG14352 2008-08-15 Release 5.9 accounting
CG14352 2008-12-18 5.12 accounting

Clone Sequence Records

RE49731.complete Sequence

1034 bp (1034 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071414

> RE49731.complete
GGTAACTCACGACTCGCAACCAAACAGCTTTTTGTTTACCAAATTTTTAA
TTTTGTCTTTGCGAAGGGAAATTTAATTACATACGCAATGTTTGCGGCTA
AGCGAGTAAGGGCCCGTGCGAAGAACTTCACCATTGAGGAGGAGGAGATC
CTGGAGAACCTGATCCTGGCGCATCGCGACGTGATCCGCAACAAGCAGAA
GGATCCGGCCATTTGGAGGAAGAAATCGGAGGCGTGGAAGCAAATTGAGG
CGGACTTCGCCATTCAGACCGGAATAGAGCGTTCTTGGCAGGCTCTGCGA
GAGAAGTACACCAACAACCTGCGGATGATGCGAAAGAACGGAACACTGAG
TGACGAGGAGGCAAAGACTGACAATGCATCAGATTCGGTGCAGAATTTGT
CCATTTCGGGAGTTTCTTCGCTGGCTGCAGCTGCTGATAATGAAGAAAGT
AGTACCTATTTCGAATCGGAATTGAACCGAAAAAGCCTCAGAAGCGCCTC
TACCGAAGTCAAGCTCGTGCCGAATAACTCAAGCTACTCAGTTGACAGAC
CAAACTACTCAGCTCTGAATGTAAATGAAGAGTCAGTCGATGTGAGCTCA
GAAGAGGATGCCACGAATACCCTGAAGGATGAAAAAGTCGTTCTGATCAG
GCTGCAACAGGAGTACTATCGATGCGAAAACGCCCGGGCAGCCGAGAAGC
ACAAGCTTGAGATGGAGAAGCAGAAATACGAGCTGGAGCAGCGAAAGGTG
GAGCTGCGCAATATGCGCCTGAAAAACGAACTTCTCGAAGCGGAAATACT
CGAAAAACGACGCAAAGTCGCGCAAAGCAAGGCTTCATCCTAAGGAATTG
CTAGCTAGGATAAGTTAATTTATTCTTGTCTTCATAATGTCAGTGCTCTT
CAGTAATTACTATAGTCCTAGTTAAACAAAAGATTATCGAAAGAAACTCA
TGTACACTCCTTGATTTTTGAAACCAGAAGCTAACAATTACATCTTCAAA
AGATTTAATAATGTCTGTCAAAAAAAAAAAAAAA

RE49731.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:41:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-RA 1036 CG14352-RA 14..1032 4..1022 5080 99.9 Plus
RFeSP-RB 1088 RFeSP-RB 1004..1088 1022..938 410 98.8 Minus
RFeSP.a 1092 RFeSP.a 1008..1092 1022..938 410 98.8 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 1611886..1612456 449..1019 2795 99.3 Plus
chr2L 23010047 chr2L 1611304..1611750 4..450 2235 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:01 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:10:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1612006..1612579 449..1022 2855 99.8 Plus
2L 23513712 2L 1611424..1611870 4..450 2235 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1612006..1612579 449..1022 2855 99.8 Plus
2L 23513712 2L 1611424..1611870 4..450 2235 100 Plus
Blast to na_te.dros performed 2019-03-16 14:10:31
Subject Length Description Subject Range Query Range Score Percent Strand
mdg3 5519 mdg3 DMMDG3 5519bp Derived from X95908 (e990667) (Rel. 49, Last updated, Version 3). 577..709 708..837 117 58.5 Plus

RE49731.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:11:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 1611301..1611748 1..448 99 -> Plus
chr2L 1611886..1612456 449..1019 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:20 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 88..843 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:06:50 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 88..843 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 14:54:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 88..843 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:31:18 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 88..843 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:24:38 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..756 88..843 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:35:17 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..1019 1..1019 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:06:49 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..1019 1..1019 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 14:54:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 12..1030 1..1019 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:31:18 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 1..1019 1..1019 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:24:38 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
CG14352-RA 12..1030 1..1019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1611421..1611868 1..448 99 -> Plus
2L 1612006..1612576 449..1019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1611421..1611868 1..448 99 -> Plus
2L 1612006..1612576 449..1019 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:11:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1611421..1611868 1..448 99 -> Plus
2L 1612006..1612576 449..1019 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 14:54:28 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1611421..1611868 1..448 99 -> Plus
arm_2L 1612006..1612576 449..1019 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:07:49 Download gff for RE49731.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1611421..1611868 1..448 99 -> Plus
2L 1612006..1612576 449..1019 99   Plus

RE49731.hyp Sequence

Translation from 0 to 842

> RE49731.hyp
GNSRLATKQLFVYQIFNFVFAKGNLITYAMFAAKRVRARAKNFTIEEEEI
LENLILAHRDVIRNKQKDPAIWRKKSEAWKQIEADFAIQTGIERSWQALR
EKYTNNLRMMRKNGTLSDEEAKTDNASDSVQNLSISGVSSLAAAADNEES
STYFESELNRKSLRSASTEVKLVPNNSSYSVDRPNYSALNVNEESVDVSS
EEDATNTLKDEKVVLIRLQQEYYRCENARAAEKHKLEMEKQKYELEQRKV
ELRNMRLKNELLEAEILEKRRKVAQSKASS*

RE49731.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:00:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-PA 251 CG14352-PA 1..251 30..280 1243 100 Plus

RE49731.pep Sequence

Translation from 87 to 842

> RE49731.pep
MFAAKRVRARAKNFTIEEEEILENLILAHRDVIRNKQKDPAIWRKKSEAW
KQIEADFAIQTGIERSWQALREKYTNNLRMMRKNGTLSDEEAKTDNASDS
VQNLSISGVSSLAAAADNEESSTYFESELNRKSLRSASTEVKLVPNNSSY
SVDRPNYSALNVNEESVDVSSEEDATNTLKDEKVVLIRLQQEYYRCENAR
AAEKHKLEMEKQKYELEQRKVELRNMRLKNELLEAEILEKRRKVAQSKAS
S*

RE49731.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:53:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24799-PA 250 GG24799-PA 1..250 1..251 912 77 Plus
Dere\GG14026-PA 237 GG14026-PA 5..229 8..246 285 33.6 Plus
Dere\GG13197-PA 203 GG13197-PA 5..200 29..244 143 23.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18463-PA 264 GH18463-PA 7..229 8..244 242 30.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14352-PA 251 CG14352-PA 1..251 1..251 1243 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:53:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24042-PA 235 GI24042-PA 7..233 8..244 282 32 Plus
Dmoj\GI17315-PA 635 GI17315-PA 60..312 6..237 226 29 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:53:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15755-PA 176 GL15755-PA 7..163 8..231 234 31.2 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16825-PA 251 GM16825-PA 1..251 1..251 1060 87.6 Plus
Dsec\GM24861-PA 224 GM24861-PA 5..222 8..246 246 33.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23105-PA 251 GD23105-PA 1..251 1..251 1060 86.9 Plus
Dsim\GD12913-PA 123 GD12913-PA 5..101 8..107 148 38 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15833-PA 300 GJ15833-PA 41..290 6..237 250 29.3 Plus
Dvir\GJ23671-PA 436 GJ23671-PA 7..78 8..79 172 41.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:53:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17648-PA 253 GE17648-PA 1..253 1..251 948 77.9 Plus
Dyak\GE21229-PA 271 GE21229-PA 1..257 1..246 294 34.8 Plus