BDGP Sequence Production Resources |
Search the DGRC for RE49860
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 498 |
Well: | 60 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12338-RA |
Protein status: | RE49860.pep: gold |
Preliminary Size: | 967 |
Sequenced Size: | 1124 |
Gene | Date | Evidence |
---|---|---|
CG12338 | 2001-12-14 | Blastp of sequenced clone |
CG12338 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12338 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12338 | 2008-04-29 | Release 5.5 accounting |
CG12338 | 2008-08-15 | Release 5.9 accounting |
CG12338 | 2008-12-18 | 5.12 accounting |
1124 bp (1124 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071416
> RE49860.complete AGTACCAAATCGCCTTCCATTGGGATTGGGTATCAACTCAAAGCGGATCC AGAATGCATTTCGGAGTCTTGGGAAGCGGTATCATTGGTCTTACGACCGC CTTAGAACTCCAGAAGGAGTTTCCCACAGCAAGGGTTTCCGTGATTGCGG ATCGGTTTAACGAGGACACCGTCAGCTATGTGGCGGCTGGAATTTTCCGA CCTGGAACCAGCTTTATGGGCCCCACCCAGAAAATTACGCAACAATGGAT GACCGATGCCTTCAACTACTGGGATGAGCTGCGTCGCTCCAAGGAGGCTC CTCTGGCGGGCGTGTGCCAATTATCCGGCTATATTTACTCCCGCACCTCC CCCTCCATCGTACGGAACCACTTTATTGAGAAACTATTGCCCGTCTACCG AAGAGCCACCGAGGAGGAACTGAGGCTATGCAACGGCGGCTGGAAGTACG GATCCTTCTTCACCACATGCCTAACGGAAAGCCGCCTCTTCTTGCCCTAT GCCACTAAAAAATTCCTGGAGAACGGAGGAGAGGTTGTCCGTCAGCATGT GAACAGCTTTTTCGAAGTGCCGCAGAACATTGACTTGCTCCTTAACTGCA CCGGAATGGGAGCCAAGGAGTTGTGTGGGGACCAGCACTTGGTTCCCATT CGGGGTCAAGTGCTCAAAGTGCGTGCTCCCTGGGTAAAGACGGCTTTCTA CGGCGATTACGACACCTACGTTCTTCCCGGATTTGAGACTGTGACCCTGG GAGGATGTCGCCAATTCGACAGCTACAACACCGAGTGGTGCAAATACGAT AGCATGGCCATTCGAGAGCGTTGCTACGATTTGCTGCCCAGTCTCCGGAA AGCGGAGATCGTGCGGGAATGTGTTGGTCTGCGGCCACACCGCTCCGTCG TTCGGGTGGAGCCAGAACTGATCACGAATCCGGAAGGCAGGCGGCTGAAG GTAGTCCACAACTACGGCCACGGCGGCTACGGTGTGACCACGGCTCCTGG AACGGCTATGTACGCAGTTCGATTGGTACGCGATCTACTAGCGGGAAACA GTAAACTGTAGGTGGTAAAATCGTTGTTAATTGTTGGTCATTAAACTCTT TATACTCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12338-RA | 1437 | CG12338-RA | 232..1338 | 1..1107 | 5535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 6617158..6617753 | 1107..512 | 2980 | 100 | Minus |
chr2R | 21145070 | chr2R | 6618239..6618479 | 241..1 | 1190 | 99.6 | Minus |
chr2R | 21145070 | chr2R | 6617823..6617969 | 511..365 | 735 | 100 | Minus |
chr2R | 21145070 | chr2R | 6618050..6618173 | 365..242 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 10729593..10730188 | 1107..512 | 2980 | 100 | Minus |
2R | 25286936 | 2R | 10730674..10730914 | 241..1 | 1205 | 100 | Minus |
2R | 25286936 | 2R | 10730258..10730404 | 511..365 | 735 | 100 | Minus |
2R | 25286936 | 2R | 10730485..10730608 | 365..242 | 620 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 10730792..10731387 | 1107..512 | 2980 | 100 | Minus |
2R | 25260384 | 2R | 10731873..10732113 | 241..1 | 1205 | 100 | Minus |
2R | 25260384 | 2R | 10731457..10731603 | 511..365 | 735 | 100 | Minus |
2R | 25260384 | 2R | 10731684..10731807 | 365..242 | 620 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 6617156..6617753 | 512..1108 | 99 | <- | Minus |
chr2R | 6617823..6617968 | 366..511 | 100 | <- | Minus |
chr2R | 6618050..6618173 | 242..365 | 100 | <- | Minus |
chr2R | 6618239..6618479 | 1..241 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1008 | 54..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1008 | 54..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1008 | 54..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1008 | 54..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1008 | 54..1061 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1107 | 1..1108 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1107 | 1..1108 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 5..1111 | 1..1108 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 1..1107 | 1..1108 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12338-RA | 5..1111 | 1..1108 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10729591..10730188 | 512..1108 | 99 | <- | Minus |
2R | 10730258..10730403 | 366..511 | 100 | <- | Minus |
2R | 10730485..10730608 | 242..365 | 100 | <- | Minus |
2R | 10730674..10730914 | 1..241 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10729591..10730188 | 512..1108 | 99 | <- | Minus |
2R | 10730258..10730403 | 366..511 | 100 | <- | Minus |
2R | 10730485..10730608 | 242..365 | 100 | <- | Minus |
2R | 10730674..10730914 | 1..241 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10729591..10730188 | 512..1108 | 99 | <- | Minus |
2R | 10730258..10730403 | 366..511 | 100 | <- | Minus |
2R | 10730485..10730608 | 242..365 | 100 | <- | Minus |
2R | 10730674..10730914 | 1..241 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 6618179..6618419 | 1..241 | 100 | Minus | |
arm_2R | 6617096..6617693 | 512..1108 | 99 | <- | Minus |
arm_2R | 6617763..6617908 | 366..511 | 100 | <- | Minus |
arm_2R | 6617990..6618113 | 242..365 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 10730790..10731387 | 512..1108 | 99 | <- | Minus |
2R | 10731457..10731602 | 366..511 | 100 | <- | Minus |
2R | 10731684..10731807 | 242..365 | 100 | <- | Minus |
2R | 10731873..10732113 | 1..241 | 100 | Minus |
Translation from 2 to 1060
> RE49860.hyp YQIAFHWDWVSTQSGSRMHFGVLGSGIIGLTTALELQKEFPTARVSVIAD RFNEDTVSYVAAGIFRPGTSFMGPTQKITQQWMTDAFNYWDELRRSKEAP LAGVCQLSGYIYSRTSPSIVRNHFIEKLLPVYRRATEEELRLCNGGWKYG SFFTTCLTESRLFLPYATKKFLENGGEVVRQHVNSFFEVPQNIDLLLNCT GMGAKELCGDQHLVPIRGQVLKVRAPWVKTAFYGDYDTYVLPGFETVTLG GCRQFDSYNTEWCKYDSMAIRERCYDLLPSLRKAEIVRECVGLRPHRSVV RVEPELITNPEGRRLKVVHNYGHGGYGVTTAPGTAMYAVRLVRDLLAGNS KL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12338-PB | 335 | CG12338-PB | 1..335 | 18..352 | 1786 | 100 | Plus |
CG12338-PA | 335 | CG12338-PA | 1..335 | 18..352 | 1786 | 100 | Plus |
CG11236-PA | 341 | CG11236-PA | 3..325 | 19..335 | 408 | 31.8 | Plus |
CG11236-PB | 338 | CG11236-PB | 3..322 | 19..335 | 390 | 31.5 | Plus |
Translation from 53 to 1060
> RE49860.pep MHFGVLGSGIIGLTTALELQKEFPTARVSVIADRFNEDTVSYVAAGIFRP GTSFMGPTQKITQQWMTDAFNYWDELRRSKEAPLAGVCQLSGYIYSRTSP SIVRNHFIEKLLPVYRRATEEELRLCNGGWKYGSFFTTCLTESRLFLPYA TKKFLENGGEVVRQHVNSFFEVPQNIDLLLNCTGMGAKELCGDQHLVPIR GQVLKVRAPWVKTAFYGDYDTYVLPGFETVTLGGCRQFDSYNTEWCKYDS MAIRERCYDLLPSLRKAEIVRECVGLRPHRSVVRVEPELITNPEGRRLKV VHNYGHGGYGVTTAPGTAMYAVRLVRDLLAGNSKL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11092-PA | 335 | GF11092-PA | 1..335 | 1..335 | 1724 | 95.5 | Plus |
Dana\GF15429-PA | 341 | GF15429-PA | 2..332 | 1..325 | 413 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22723-PA | 335 | GG22723-PA | 1..335 | 1..335 | 1756 | 96.7 | Plus |
Dere\GG10434-PA | 341 | GG10434-PA | 3..325 | 2..318 | 431 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24186-PA | 335 | GH24186-PA | 1..335 | 1..335 | 1627 | 87.5 | Plus |
Dgri\GH20617-PA | 335 | GH20617-PA | 1..335 | 1..335 | 1625 | 87.2 | Plus |
Dgri\GH13713-PA | 341 | GH13713-PA | 2..332 | 1..325 | 414 | 31.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12338-PB | 335 | CG12338-PB | 1..335 | 1..335 | 1786 | 100 | Plus |
CG12338-PA | 335 | CG12338-PA | 1..335 | 1..335 | 1786 | 100 | Plus |
CG11236-PA | 341 | CG11236-PA | 3..325 | 2..318 | 408 | 31.8 | Plus |
CG11236-PB | 338 | CG11236-PB | 3..322 | 2..318 | 390 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20172-PA | 335 | GI20172-PA | 1..335 | 1..335 | 1645 | 88.1 | Plus |
Dmoj\GI23973-PA | 341 | GI23973-PA | 2..338 | 1..334 | 415 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17186-PA | 335 | GL17186-PA | 1..335 | 1..335 | 1684 | 90.4 | Plus |
Dper\GL26186-PA | 342 | GL26186-PA | 3..326 | 2..318 | 404 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11563-PA | 335 | GA11563-PA | 1..335 | 1..335 | 1684 | 90.4 | Plus |
Dpse\GA10855-PA | 342 | GA10855-PA | 3..326 | 2..318 | 404 | 31.3 | Plus |
Dpse\GA28065-PA | 199 | GA28065-PA | 12..183 | 146..318 | 319 | 39.5 | Plus |
Dpse\GA24279-PA | 327 | GA24279-PA | 3..286 | 2..285 | 285 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20499-PA | 335 | GM20499-PA | 1..335 | 1..335 | 1756 | 97 | Plus |
Dsec\GM16217-PA | 341 | GM16217-PA | 3..325 | 2..318 | 400 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25962-PA | 335 | GD25962-PA | 1..335 | 1..335 | 1780 | 98.5 | Plus |
Dsim\GD23432-PA | 341 | GD23432-PA | 3..325 | 2..318 | 403 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20129-PA | 335 | GJ20129-PA | 1..335 | 1..335 | 1655 | 88.4 | Plus |
Dvir\GJ21247-PA | 341 | GJ21247-PA | 2..341 | 1..335 | 423 | 33.4 | Plus |