BDGP Sequence Production Resources |
Search the DGRC for RE49934
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 499 |
Well: | 34 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11447-RA |
Protein status: | RE49934.pep: gold |
Preliminary Size: | 753 |
Sequenced Size: | 1001 |
Gene | Date | Evidence |
---|---|---|
CG11447 | 2001-12-17 | Blastp of sequenced clone |
CG11447 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11447 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11447 | 2008-04-29 | Release 5.5 accounting |
CG11447 | 2008-08-15 | Release 5.9 accounting |
CG11447 | 2008-12-18 | 5.12 accounting |
1001 bp (1001 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071418
> RE49934.complete AGGAGGCGATCTAATTTCGATATTACACAATGCGTCTTGTTTTTACGGGT AATTGTGTTTTTAAACGCCTGCTGCACACGGAAATAGGCGGAAAGTATGC CAAACAGCAGCCGCGGAACCTCAAAGGACGGAGCAAGAGCTCCCAGGAGT GGCTTACGCGCCAACTGGCGGATCCGTACGTGGAGAAGGCCCGCATGATG AACTATCGCTGCCGGAGTGCCTTCAAATTACTGGAGATCGACGACAAATA CGGAATACTGCGGCCCGGAGACACAGTTTTGGAATGCGGAGCTGCTCCTG GCAGCTGGACCCAGGTGGCCGTGGAGCGGACCAATGCCAACGGAAAGCAG GAGCGGGCGCCACAGGGAGCCGTCTTTAGCATCGACCTGTTGCATTTCCA TGCTGTGCCGGGTGCCACAATCTTTGGCGGCATGGATTTCACTTCTTCGC TGGCACAAAAGCGGCTGAGGGAAGCGTTACAAGACAGAAAGGTCAACTGC GTGCTGTCCGATATGGCACCCAATGCCACCGGAGTGAGGATGCTGGACCA GGAGAGCATCACTAACCTCTGCTACGAGGTGCTGCGCTTTGCCCTGGCCA TGTCTGCTCCGCAGGCCCATCTGGTGGTCAAGGTGTGGGATAATGGCGAC GTGCCCAAGCTGGAGCGAGATATGCTTAGGTTTTATGAGAAAGTGAAGAG AGTAAAACCGCGCGCTAGCCGCGGAGACTCCGCCGAGCACTTCCTGGTGG CCAGGAACTTTAAAGGAGCAACGGATAGTTAATTATTAACTGCGTTTTTT GGACTAGTTGAATTAAAAGCTTTGTTAATTGACTGTAGCTTATATTGGAT AGAATAACTAAAGGGAAGTAACCTAGGATTAATTTCATCTCAACATTTTT GTTGATTTTCTTTTTGATGTTTTAATCTTTGTTGTTATATACAGTTCTGT AACAAATTATATGAATTTAGTTGAGTATTAACAACCCAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 15685530..15686513 | 4..987 | 4905 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 19861617..19862602 | 4..989 | 4930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 19602448..19603433 | 4..989 | 4930 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
aurora-element | 4263 | aurora-element DMAURA 4263bp Derived from AB022762 (d1268008) (Rel. 59, Last updated, Version 1). | 3666..3727 | 265..326 | 112 | 64.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 15685528..15686513 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..753 | 30..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..753 | 30..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..753 | 30..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..753 | 30..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..753 | 30..782 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 3..986 | 4..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 1..984 | 4..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 6..991 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 3..986 | 4..987 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11447-RA | 6..991 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19861615..19862600 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19861615..19862600 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19861615..19862600 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 15687337..15688322 | 1..987 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19602446..19603431 | 1..987 | 99 | Plus |
Translation from 29 to 781
> RE49934.pep MRLVFTGNCVFKRLLHTEIGGKYAKQQPRNLKGRSKSSQEWLTRQLADPY VEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPGSWTQVAVER TNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREAL QDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKGATDS *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17621-PA | 254 | GF17621-PA | 1..250 | 1..250 | 1255 | 92 | Plus |
Dana\GF10393-PA | 817 | GF10393-PA | 13..200 | 48..244 | 205 | 30.5 | Plus |
Dana\GF17080-PA | 301 | GF17080-PA | 10..209 | 48..244 | 198 | 30.1 | Plus |
Dana\GF23069-PA | 405 | GF23069-PA | 10..205 | 48..244 | 190 | 26.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23538-PA | 250 | GG23538-PA | 1..250 | 1..250 | 1304 | 96 | Plus |
Dere\GG21940-PA | 300 | GG21940-PA | 10..207 | 48..244 | 206 | 29.3 | Plus |
Dere\GG14838-PA | 321 | GG14838-PA | 10..205 | 48..244 | 200 | 27.9 | Plus |
Dere\GG17939-PA | 816 | GG17939-PA | 13..200 | 48..244 | 197 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16178-PA | 249 | GH16178-PA | 10..249 | 8..247 | 1116 | 84.6 | Plus |
Dgri\GH17878-PA | 836 | GH17878-PA | 13..200 | 48..244 | 223 | 32 | Plus |
Dgri\GH14141-PA | 311 | GH14141-PA | 10..210 | 48..245 | 204 | 27.2 | Plus |
Dgri\GH18555-PA | 356 | GH18555-PA | 10..205 | 48..244 | 203 | 28.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11447-PA | 250 | CG11447-PA | 1..250 | 1..250 | 1300 | 100 | Plus |
CG7009-PA | 320 | CG7009-PA | 10..205 | 48..244 | 201 | 28.4 | Plus |
CG5220-PA | 302 | CG5220-PA | 10..207 | 48..244 | 200 | 28.8 | Plus |
CG8939-PA | 817 | CG8939-PA | 13..200 | 48..244 | 200 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22429-PA | 254 | GI22429-PA | 5..248 | 3..246 | 1105 | 82.8 | Plus |
Dmoj\GI10674-PA | 305 | GI10674-PA | 10..210 | 48..245 | 206 | 28.2 | Plus |
Dmoj\GI16447-PA | 826 | GI16447-PA | 13..200 | 48..244 | 197 | 29.4 | Plus |
Dmoj\GI24754-PA | 382 | GI24754-PA | 10..205 | 48..244 | 195 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12202-PA | 249 | GL12202-PA | 7..247 | 8..248 | 1150 | 88 | Plus |
Dper\GL12002-PA | 316 | GL12002-PA | 10..205 | 48..244 | 205 | 28.4 | Plus |
Dper\GL24549-PA | 304 | GL24549-PA | 10..209 | 48..244 | 184 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11008-PA | 249 | GA11008-PA | 7..247 | 8..248 | 1144 | 87.6 | Plus |
Dpse\GA20027-PA | 316 | GA20027-PA | 10..205 | 48..244 | 205 | 28.4 | Plus |
Dpse\GA18746-PA | 304 | GA18746-PA | 10..209 | 48..244 | 184 | 31.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26867-PA | 250 | GM26867-PA | 1..250 | 1..250 | 1318 | 97.2 | Plus |
Dsec\GM15097-PA | 321 | GM15097-PA | 10..205 | 48..244 | 203 | 28.4 | Plus |
Dsec\GM15199-PA | 302 | GM15199-PA | 10..207 | 48..244 | 197 | 29.1 | Plus |
Dsec\GM11680-PA | 817 | GM11680-PA | 13..200 | 48..244 | 197 | 29.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19317-PA | 250 | GD19317-PA | 1..250 | 1..250 | 1330 | 98.4 | Plus |
Dsim\GD19132-PA | 302 | GD19132-PA | 10..207 | 48..244 | 199 | 29.6 | Plus |
Dsim\GD17262-PA | 204 | GD17262-PA | 13..179 | 48..223 | 159 | 27 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10992-PA | 254 | GJ10992-PA | 5..250 | 3..248 | 1097 | 81.7 | Plus |
Dvir\GJ23026-PA | 313 | GJ23026-PA | 10..210 | 48..245 | 206 | 28.6 | Plus |
Dvir\GJ15847-PA | 831 | GJ15847-PA | 13..200 | 48..244 | 202 | 29.9 | Plus |
Dvir\GJ22540-PA | 316 | GJ22540-PA | 10..205 | 48..244 | 195 | 27.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22358-PA | 249 | GK22358-PA | 9..248 | 8..246 | 1062 | 81.2 | Plus |
Dwil\GK16249-PA | 306 | GK16249-PA | 10..209 | 48..244 | 227 | 30.3 | Plus |
Dwil\GK22383-PA | 305 | GK22383-PA | 10..205 | 48..244 | 213 | 29.9 | Plus |
Dwil\GK19748-PA | 824 | GK19748-PA | 13..200 | 48..244 | 201 | 29.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25629-PA | 250 | GE25629-PA | 1..250 | 1..250 | 1293 | 95.6 | Plus |
Dyak\GE11211-PA | 250 | GE11211-PA | 1..250 | 1..250 | 1283 | 95.2 | Plus |
Dyak\GE24604-PA | 302 | GE24604-PA | 10..207 | 48..244 | 206 | 29.3 | Plus |
Dyak\GE25011-PA | 318 | GE25011-PA | 10..205 | 48..244 | 202 | 27.9 | Plus |
Dyak\GE17245-PA | 819 | GE17245-PA | 13..200 | 48..244 | 196 | 29.9 | Plus |
Translation from 29 to 781
> RE49934.hyp MRLVFTGNCVFKRLLHTEIGGKYAKQQPRNLKGRSKSSQEWLTRQLADPY VEKARMMNYRCRSAFKLLEIDDKYGILRPGDTVLECGAAPGSWTQVAVER TNANGKQERAPQGAVFSIDLLHFHAVPGATIFGGMDFTSSLAQKRLREAL QDRKVNCVLSDMAPNATGVRMLDQESITNLCYEVLRFALAMSAPQAHLVV KVWDNGDVPKLERDMLRFYEKVKRVKPRASRGDSAEHFLVARNFKGATDS *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11447-PA | 250 | CG11447-PA | 1..250 | 1..250 | 1300 | 100 | Plus |
CG7009-PA | 320 | CG7009-PA | 10..205 | 48..244 | 201 | 28.4 | Plus |
CG5220-PA | 302 | CG5220-PA | 10..207 | 48..244 | 200 | 28.8 | Plus |
CG8939-PA | 817 | CG8939-PA | 13..200 | 48..244 | 200 | 29.9 | Plus |