BDGP Sequence Production Resources |
Search the DGRC for RE49992
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 499 |
Well: | 92 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12540-RA |
Protein status: | RE49992.pep: gold |
Preliminary Size: | 444 |
Sequenced Size: | 786 |
Gene | Date | Evidence |
---|---|---|
CG12540 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12540 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12540 | 2008-04-29 | Release 5.5 accounting |
CG12540 | 2008-08-15 | Release 5.9 accounting |
CG12540 | 2008-12-18 | 5.12 accounting |
786 bp (786 high quality bases) assembled on 2001-12-16
GenBank Submission: AY071419
> RE49992.complete GCGGTCGACAAACGGCAGTTCCAGCATCAGCATCATAACTCGGCAACCCA AGCTCGAGACTCGATACTCGACTTTTCTCCCAGAGGATCTCTTTCTACAG GCAATTCCAAATGTTGCGCATACGCCGTGTGAGCCACGTGCAGCTGCTCG TTCTAATGGCAATCGTTGTGGTGGTGACGGCAAAACAGGAAAGTTCAACG CGTCAATTCGGCGGTGGCCAGAACTTCGGCAACGGCCTGGGCCCCTCCTT TGGTGGCGTGGGCGCTGGTGGTCTAGGGCCTGGGGCCGGGTTTGGACCCG GTTCCGCAGCCGGATATCCGGGACAAGGCGGCTACGGACCAGCGCAGCAG CCGGGCTGCCCGCTGTGCGATTCGTCGGTTTACTCGTACTGCTCGCACAA GATGGTACACGATGCCTGTTGCTGCGATTTTCCAGGCGGTGCCCCGCAGT TGAGACCGCCCCAGTGTTTGTACTACGACTGCTCGCTGCTTTATGCCAAA TCCTGTTACGAGCACGCCCTCATCAAGAACTGCTGCTGCAATAATCCCTA CTGACGCGCCCATTTATCGGGAAAAATCGTGAGGTATCGGGAAATTGGAA ATGGAAAATGGGAAATGTGAAATGCGGAGCGCCAAGTGATTTGTTTGCAC TTCGGCTTCATTTATTTATTCAATACATTTAAAATGCATGTACAGCTATG ATTTAAAATTAAGTTGCGTGCGATTGCTTGAAGCGCGCTAAATTAAATTA AGTAATTTATTTGACAACCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12540-RA | 962 | CG12540-RA | 193..961 | 4..772 | 3845 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 14387354..14387691 | 433..770 | 1660 | 99.4 | Plus |
chrX | 22417052 | chrX | 14386990..14387232 | 194..436 | 1200 | 99.6 | Plus |
chrX | 22417052 | chrX | 14386591..14386785 | 4..198 | 960 | 99.5 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 14386588..14386785 | 1..198 | 98 | -> | Plus |
chrX | 14386995..14387231 | 199..435 | 100 | -> | Plus |
chrX | 14387357..14387691 | 436..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..444 | 111..554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..444 | 111..554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..444 | 111..554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..444 | 111..554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..444 | 111..554 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..770 | 1..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..770 | 1..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..770 | 1..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 1..770 | 1..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12540-RA | 3..772 | 1..770 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14496137..14496334 | 1..198 | 99 | -> | Plus |
X | 14496544..14496780 | 199..435 | 100 | -> | Plus |
X | 14496906..14497240 | 436..770 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14496137..14496334 | 1..198 | 99 | -> | Plus |
X | 14496544..14496780 | 199..435 | 100 | -> | Plus |
X | 14496906..14497240 | 436..770 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14496137..14496334 | 1..198 | 99 | -> | Plus |
X | 14496544..14496780 | 199..435 | 100 | -> | Plus |
X | 14496906..14497240 | 436..770 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 14390939..14391273 | 436..770 | 100 | Plus | |
arm_X | 14390170..14390367 | 1..198 | 99 | -> | Plus |
arm_X | 14390577..14390813 | 199..435 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 14504642..14504878 | 199..435 | 100 | -> | Plus |
X | 14505004..14505338 | 436..770 | 100 | Plus | |
X | 14504235..14504432 | 1..198 | 99 | -> | Plus |
Translation from 0 to 543
> RE49992.hyp QSTNGSSSISIITRQPKLETRYSTFLPEDLFLQAIPNVAHTPCEPRAAAR SNGNRCGGDGKTGKFNASIRRWPELRQRPGPLLWWRGRWWSRAWGRVWTR FRSRISGTRRLRTSAAAGLPAVRFVGLLVLLAQDGTRCLLLRFSRRCPAV ETAPVFVLRLLAALCQILLRARPHQELLLQ*
Translation from 110 to 553
> RE49992.pep MLRIRRVSHVQLLVLMAIVVVVTAKQESSTRQFGGGQNFGNGLGPSFGGV GAGGLGPGAGFGPGSAAGYPGQGGYGPAQQPGCPLCDSSVYSYCSHKMVH DACCCDFPGGAPQLRPPQCLYYDCSLLYAKSCYEHALIKNCCCNNPY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22562-PA | 138 | GF22562-PA | 1..138 | 1..147 | 409 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17845-PA | 145 | GG17845-PA | 2..145 | 4..147 | 469 | 71.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11933-PA | 131 | GH11933-PA | 8..131 | 3..147 | 347 | 54.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12540-PA | 147 | CG12540-PA | 1..147 | 1..147 | 828 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16943-PA | 69 | GI16943-PA | 35..69 | 113..147 | 154 | 80 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20142-PA | 144 | GL20142-PA | 82..144 | 85..147 | 331 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11687-PA | 148 | GA11687-PA | 1..148 | 1..147 | 342 | 64.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17678-PA | 144 | GM17678-PA | 1..144 | 1..147 | 618 | 85 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17173-PA | 145 | GD17173-PA | 1..145 | 1..147 | 696 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK10320-PA | 148 | GK10320-PA | 1..148 | 1..147 | 360 | 56.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17142-PA | 150 | GE17142-PA | 1..150 | 1..147 | 474 | 82.9 | Plus |