BDGP Sequence Production Resources |
Search the DGRC for RE50009
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 500 |
Well: | 9 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2931-RA |
Protein status: | RE50009.pep: gold |
Preliminary Size: | 957 |
Sequenced Size: | 1125 |
Gene | Date | Evidence |
---|---|---|
CG2931 | 2001-12-14 | Blastp of sequenced clone |
CG2931 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2931 | 2003-01-01 | Sim4 clustering to Release 3 |
CG2931 | 2008-04-29 | Release 5.5 accounting |
CG2931 | 2008-08-15 | Release 5.9 accounting |
CG2931 | 2008-12-18 | 5.12 accounting |
1125 bp (1125 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071420
> RE50009.complete GATATTTGTTTAGTACTCCGAGTTTTCTGCAGCACTTTCGTAAAAACTTG CTTTGATTTGATTTTTTAAAAGAGAAAACCCCACTTCAAATGGGTACAAA GCGTCGCAACATCGAGGATGAGCTCTCACGCTTCGAGGCGGAGATCTCGA AGCCCCCCGCCCGCAATCTCTTCGTGCCCAACCAGGTGCGCCCGATCATA GCCGCCAATACGTACCAAAACTCGCAGCACAAGCTGCAGCATCACCAGGG CAATGGAGGATCGCGTCTGACCGTACCCCCGCCCCCGATGCCGCCTCCAC CCACGTTTATGTCCACCTTCGTGCCTACGGGCAGTGGAGGTGGTTCTTCC AAGGCTATGTCTGCCACTCCCGTAGTCCTGAGCAGCGCCCCCAAACTTTA TCAGTGCCGGCAGTCTGTGCACGTGCCCACCGTGGCCGCCGCGCCCTCCA TCGACATCAACGCCGTCTCTTTTGACGTAACGCAGAAGCTGAAGAAGCTC AAGGCGGAAAAGTCTGGACCCAATCCCATTGCAGAGGAGGCCATTAAGGC AGCGCGCGCATCATCGGCGCTGCAATCCTTCCAGACAACAGAGCGGAAAA AGAAAGACCGCAAGACGGTGCGTATCGCTGGCGGCACCGTGTGGGAGGAT ACTTCGCTGGCTGACTGGCCCGACGATGACTTCCGCATCTTTTGTGGTGA CTTGGGAAACGACGTCAACGACGAGGTCCTGACCCGGACCTTCAACAAGT TCCCCTCGTTTCAGCGGGCCCGTGTGGTGCGGGACAAGCGCACGGGCAAG AGCAAGGGATTTGGCTTCGTGAGCTTCAGAGAACCGGCCGACTTTATACG GGCCATGAAGGAGATGGACGGCCGCTATGTGGGCAGCCGGCCTATCAAAC TGCGCAAGAGCACGTGGCGACAACGCAGTCTTGACGTAGTTAAGAAAAAG GAGCGCGAAAAACAGGTGCTTCTGCAGGCCTTCAATTCCATGACTTGAAT CTGAGTGTGCATATCGTGTCCTTTAGGCTAGTTTCGGTCACTTTGATGTA GCAAATTAGATTTGGATGTTGCTGCTAAAGATGAGCAATAAATTTACGTT TAGCAATCGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2931-RA | 1109 | CG2931-RA | 1..1107 | 1..1107 | 5535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1393163..1394269 | 1107..1 | 5535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 5567504..5568610 | 1107..1 | 5535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 5308335..5309441 | 1107..1 | 5535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 2003..2078 | 1089..1017 | 112 | 63.2 | Minus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 4200..4275 | 1089..1017 | 112 | 63.2 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 3455..3530 | 1089..1017 | 112 | 63.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1393161..1394269 | 1..1109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..909 | 90..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..909 | 90..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..909 | 90..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..909 | 90..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..909 | 90..998 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..1109 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..1109 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 6..1114 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 1..1109 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2931-RA | 6..1114 | 1..1109 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5567502..5568610 | 1..1109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5567502..5568610 | 1..1109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5567502..5568610 | 1..1109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1393224..1394332 | 1..1109 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5308333..5309441 | 1..1109 | 99 | Minus |
Translation from 89 to 997
> RE50009.pep MGTKRRNIEDELSRFEAEISKPPARNLFVPNQVRPIIAANTYQNSQHKLQ HHQGNGGSRLTVPPPPMPPPPTFMSTFVPTGSGGGSSKAMSATPVVLSSA PKLYQCRQSVHVPTVAAAPSIDINAVSFDVTQKLKKLKAEKSGPNPIAEE AIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRI FCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPA DFIRAMKEMDGRYVGSRPIKLRKSTWRQRSLDVVKKKEREKQVLLQAFNS MT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11626-PA | 310 | GF11626-PA | 1..309 | 1..301 | 1378 | 90.6 | Plus |
Dana\GF18875-PA | 495 | GF18875-PA | 161..241 | 195..275 | 170 | 39.5 | Plus |
Dana\GF17967-PA | 471 | GF17967-PA | 96..175 | 199..281 | 162 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG10948-PA | 305 | GG10948-PA | 1..305 | 1..302 | 1566 | 97.4 | Plus |
Dere\GG11588-PA | 502 | GG11588-PA | 167..247 | 195..275 | 170 | 39.5 | Plus |
Dere\GG12380-PA | 464 | GG12380-PA | 81..175 | 188..281 | 164 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22277-PA | 300 | GH22277-PA | 1..300 | 1..302 | 1389 | 90.1 | Plus |
Dgri\GH17439-PA | 520 | GH17439-PA | 175..255 | 195..275 | 170 | 39.5 | Plus |
Dgri\GH19101-PA | 476 | GH19101-PA | 96..175 | 199..281 | 164 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2931-PA | 302 | CG2931-PA | 1..302 | 1..302 | 1562 | 100 | Plus |
trv-PI | 651 | CG34362-PI | 176..389 | 61..275 | 168 | 26.3 | Plus |
trv-PF | 498 | CG34362-PF | 164..243 | 196..275 | 157 | 40 | Plus |
trv-PA | 505 | CG34362-PA | 164..243 | 196..275 | 157 | 40 | Plus |
trv-PJ | 508 | CG34362-PJ | 164..243 | 196..275 | 157 | 40 | Plus |
trv-PE | 509 | CG34362-PE | 164..243 | 196..275 | 157 | 40 | Plus |
Rox8-PC | 464 | CG5422-PC | 81..172 | 188..275 | 156 | 39.1 | Plus |
Rox8-PB | 464 | CG5422-PB | 81..172 | 188..275 | 156 | 39.1 | Plus |
Rox8-PH | 470 | CG5422-PH | 81..172 | 188..275 | 156 | 39.1 | Plus |
Rox8-PG | 470 | CG5422-PG | 81..172 | 188..275 | 156 | 39.1 | Plus |
Rox8-PE | 470 | CG5422-PE | 81..172 | 188..275 | 156 | 39.1 | Plus |
Rox8-PD | 470 | CG5422-PD | 81..172 | 188..275 | 156 | 39.1 | Plus |
CG34354-PD | 431 | CG34354-PD | 94..173 | 196..275 | 152 | 40 | Plus |
CG34354-PE | 431 | CG34354-PE | 94..173 | 196..275 | 152 | 40 | Plus |
CG34354-PG | 434 | CG34354-PG | 94..173 | 196..275 | 152 | 40 | Plus |
CG34354-PF | 550 | CG34354-PF | 94..173 | 196..275 | 152 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23084-PA | 302 | GI23084-PA | 1..302 | 1..302 | 1361 | 89.9 | Plus |
Dmoj\GI22766-PA | 387 | GI22766-PA | 44..122 | 197..275 | 164 | 40.5 | Plus |
Dmoj\GI22960-PA | 475 | GI22960-PA | 96..175 | 199..281 | 163 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22151-PA | 303 | GL22151-PA | 1..302 | 1..301 | 1398 | 91.8 | Plus |
Dper\GL23648-PA | 503 | GL23648-PA | 169..249 | 195..275 | 171 | 39.5 | Plus |
Dper\GL24152-PA | 464 | GL24152-PA | 96..175 | 199..281 | 164 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15528-PA | 303 | GA15528-PA | 1..302 | 1..301 | 1398 | 91.8 | Plus |
Dpse\GA26680-PA | 503 | GA26680-PA | 169..249 | 195..275 | 171 | 39.5 | Plus |
Dpse\GA18869-PA | 464 | GA18869-PA | 96..175 | 199..281 | 164 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10617-PA | 147 | GM10617-PA | 4..147 | 162..302 | 732 | 96.5 | Plus |
Dsec\GM16370-PA | 504 | GM16370-PA | 162..242 | 195..275 | 170 | 39.5 | Plus |
Dsec\GM23518-PA | 464 | GM23518-PA | 81..175 | 188..281 | 165 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19605-PA | 266 | GD19605-PA | 1..266 | 1..302 | 1365 | 87.4 | Plus |
Dsim\GD21364-PA | 496 | GD21364-PA | 161..241 | 195..275 | 170 | 39.5 | Plus |
Dsim\GD21365-PA | 363 | GD21365-PA | 95..174 | 196..275 | 160 | 40 | Plus |
Dsim\GD18328-PA | 824 | GD18328-PA | 96..175 | 199..281 | 160 | 39.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22705-PA | 302 | GJ22705-PA | 1..302 | 1..302 | 1348 | 90.8 | Plus |
Dvir\GJ22768-PA | 504 | GJ22768-PA | 168..248 | 195..275 | 170 | 39.5 | Plus |
Dvir\GJ14540-PA | 472 | GJ14540-PA | 96..175 | 199..281 | 164 | 39.8 | Plus |
Dvir\GJ22770-PA | 401 | GJ22770-PA | 66..144 | 197..275 | 160 | 40.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12952-PA | 302 | GK12952-PA | 1..301 | 1..301 | 1382 | 91.1 | Plus |
Dwil\GK22641-PA | 521 | GK22641-PA | 178..258 | 195..275 | 170 | 39.5 | Plus |
Dwil\GK11939-PA | 469 | GK11939-PA | 81..175 | 188..281 | 165 | 37.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24162-PA | 305 | GE24162-PA | 1..305 | 1..302 | 1552 | 96.7 | Plus |
Dyak\GE23777-PA | 543 | GE23777-PA | 165..288 | 156..275 | 173 | 33.8 | Plus |
Dyak\GE10834-PA | 464 | GE10834-PA | 81..175 | 188..281 | 164 | 37.8 | Plus |
Translation from 89 to 997
> RE50009.hyp MGTKRRNIEDELSRFEAEISKPPARNLFVPNQVRPIIAANTYQNSQHKLQ HHQGNGGSRLTVPPPPMPPPPTFMSTFVPTGSGGGSSKAMSATPVVLSSA PKLYQCRQSVHVPTVAAAPSIDINAVSFDVTQKLKKLKAEKSGPNPIAEE AIKAARASSALQSFQTTERKKKDRKTVRIAGGTVWEDTSLADWPDDDFRI FCGDLGNDVNDEVLTRTFNKFPSFQRARVVRDKRTGKSKGFGFVSFREPA DFIRAMKEMDGRYVGSRPIKLRKSTWRQRSLDVVKKKEREKQVLLQAFNS MT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2931-PA | 302 | CG2931-PA | 1..302 | 1..302 | 1562 | 100 | Plus |
CG34362-PI | 651 | CG34362-PI | 176..389 | 61..275 | 168 | 26.3 | Plus |
CG34362-PF | 498 | CG34362-PF | 164..243 | 196..275 | 157 | 40 | Plus |
CG34362-PA | 505 | CG34362-PA | 164..243 | 196..275 | 157 | 40 | Plus |
CG34362-PJ | 508 | CG34362-PJ | 164..243 | 196..275 | 157 | 40 | Plus |