BDGP Sequence Production Resources |
Search the DGRC for RE50040
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 500 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5510-RA |
Protein status: | RE50040.pep: gold |
Preliminary Size: | 1055 |
Sequenced Size: | 1391 |
Gene | Date | Evidence |
---|---|---|
CG5510 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5510 | 2002-04-26 | Blastp of sequenced clone |
CG5510 | 2003-01-01 | Sim4 clustering to Release 3 |
CG5510 | 2008-04-29 | Release 5.5 accounting |
CG5510 | 2008-08-15 | Release 5.9 accounting |
CG5510 | 2008-12-18 | 5.12 accounting |
1391 bp (1391 high quality bases) assembled on 2002-04-26
GenBank Submission: AY113492
> RE50040.complete AAGTGACTCACAATTGCCCACCACTAATAGGCCGGCGAAAAAAAATTTGT CTGCAAATATTATTTTCCGTGTATGTAGTTTCATCCAAGTGGGCCACCGA ATGCAGCCATGACCAAACCGACGCGCGAACACTGTTCCCTGGCCCTGCTG GCGCTTCTCGTCGCCCCGTTCGTGGTGCTCGGTGAGGATATGCCCAGGGA GCCGGACTACATGAAGCGGGAGCACAGTTTGGTGCGTCCATTCCAAGGCG TAGGCGTGATCCTGCCACACTGGGACTTCCTGGGTAACACGATGGTGACC AGCAACTATATAAGACTGACGCCGGACTTACAGTCCAAGAGCGGTGCACT TTGGAACTACTCGCCCGTGATGACTCGCAATTGGGAAGTGCACGTTGGCT TTAAGGTGCACGGCAAGGGAACTGAACTGTTCGGCGACGGATTTGCCATT TGGTACACAAAGGAGCGCATGCAAACCGGGCCGGTCTTTGGCAGCAAGGA TCACTTCTCCGGACTGGCCATCATTCTGGACACCTATAGCAATCACAATG GTCCACACAACCACCAACATCCATATCTCAGCGCCATGGTGAACAATGGC AGCTGGAGCTACGACCACGATCGCGATGGAACGCACACTCAGCTGGCCGG CTGCGAAGTTCGTTTCCGCAATGTGGAGTACGAGACGCTGGTTAGCATTC GATACGAAAACGACATTCTGTCGGTTTCCACAGATCTGGAGAACCGCAAC GAATGGAAGAACTGCTTTGTAGTGGCCAACGTTGAGCTACCCACGGGCTA CCACTTCGGCATGTCTGCGACGACGGGTGATCTGTCCGACAATCACGATA TTCACAGTTTCAAGTTCTATGACCTGGACTTGAACGTAAATCACGATGAG ATTATCCGGCGCTCCAATATCATACCGAATGCCAAGACATTCGAGCCCCC GCGCGAGCACAAAGAAGATCCCAAGCCGGGAATGTCCAACGCCAAGATCT TCTTCATCCTTCTCTTCGTGGTTGTCGTGGCGGCTGCAGTGGCCATCTTC GCCATCTCCTACTTCAAGGATCGCAACGCGCGAAAACGTTTCTACTGAGC TCTCTAGCTAGTTCATCACAGTAGCATCATGTTAGGAGTTACCCGGACCT CAGTTGATCGCAACTTTTATTTATATTTATACCGCGACTGTATCCCATTT CTTATCACCCTTTTTAGTTTCCTTAATTGTTTAGTGAGAGGGTAAACATA ATATTACACGTGTTGGAGAGTTAAATTTAAGTGCAAATTTTTAATCTGAA CTATAGGAAAATTGAGACCGTGAGAATATTATTGCGTAGACAAGATTAAA AGCCACTAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 19991005..19991474 | 1361..892 | 2350 | 100 | Minus |
chr3R | 27901430 | chr3R | 19991804..19992133 | 891..562 | 1650 | 100 | Minus |
chr3R | 27901430 | chr3R | 19992644..19992891 | 248..1 | 1240 | 100 | Minus |
chr3R | 27901430 | chr3R | 19992187..19992385 | 561..363 | 995 | 100 | Minus |
chr3R | 27901430 | chr3R | 19992461..19992578 | 363..246 | 590 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 24167672..24168144 | 1364..892 | 2365 | 100 | Minus |
3R | 32079331 | 3R | 24168474..24168803 | 891..562 | 1650 | 100 | Minus |
3R | 32079331 | 3R | 24169314..24169561 | 248..1 | 1240 | 100 | Minus |
3R | 32079331 | 3R | 24168857..24169055 | 561..363 | 995 | 100 | Minus |
3R | 32079331 | 3R | 24169131..24169248 | 363..246 | 590 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 23908503..23908975 | 1364..892 | 2365 | 100 | Minus |
3R | 31820162 | 3R | 23909305..23909634 | 891..562 | 1650 | 100 | Minus |
3R | 31820162 | 3R | 23910145..23910392 | 248..1 | 1240 | 100 | Minus |
3R | 31820162 | 3R | 23909688..23909886 | 561..363 | 995 | 100 | Minus |
3R | 31820162 | 3R | 23909962..23910079 | 363..246 | 590 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 19991005..19991474 | 892..1361 | 100 | <- | Minus |
chr3R | 19991804..19992133 | 562..891 | 100 | <- | Minus |
chr3R | 19992187..19992384 | 364..561 | 100 | <- | Minus |
chr3R | 19992461..19992576 | 248..363 | 100 | <- | Minus |
chr3R | 19992645..19992891 | 1..247 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..990 | 109..1098 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..990 | 109..1098 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..990 | 109..1098 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..990 | 109..1098 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..990 | 109..1098 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..1361 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..1361 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 2..1362 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 1..1361 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5510-RA | 2..1362 | 1..1361 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24167675..24168144 | 892..1361 | 100 | <- | Minus |
3R | 24168474..24168803 | 562..891 | 100 | <- | Minus |
3R | 24168857..24169054 | 364..561 | 100 | <- | Minus |
3R | 24169131..24169246 | 248..363 | 100 | <- | Minus |
3R | 24169315..24169561 | 1..247 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24167675..24168144 | 892..1361 | 100 | <- | Minus |
3R | 24168474..24168803 | 562..891 | 100 | <- | Minus |
3R | 24168857..24169054 | 364..561 | 100 | <- | Minus |
3R | 24169131..24169246 | 248..363 | 100 | <- | Minus |
3R | 24169315..24169561 | 1..247 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24167675..24168144 | 892..1361 | 100 | <- | Minus |
3R | 24168474..24168803 | 562..891 | 100 | <- | Minus |
3R | 24168857..24169054 | 364..561 | 100 | <- | Minus |
3R | 24169131..24169246 | 248..363 | 100 | <- | Minus |
3R | 24169315..24169561 | 1..247 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 19993397..19993866 | 892..1361 | 100 | <- | Minus |
arm_3R | 19994196..19994525 | 562..891 | 100 | <- | Minus |
arm_3R | 19994579..19994776 | 364..561 | 100 | <- | Minus |
arm_3R | 19994853..19994968 | 248..363 | 100 | <- | Minus |
arm_3R | 19995037..19995283 | 1..247 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 23909962..23910077 | 248..363 | 100 | <- | Minus |
3R | 23910146..23910392 | 1..247 | 100 | Minus | |
3R | 23908506..23908975 | 892..1361 | 100 | <- | Minus |
3R | 23909305..23909634 | 562..891 | 100 | <- | Minus |
3R | 23909688..23909885 | 364..561 | 100 | <- | Minus |
Translation from 108 to 1097
> RE50040.pep MTKPTREHCSLALLALLVAPFVVLGEDMPREPDYMKREHSLVRPFQGVGV ILPHWDFLGNTMVTSNYIRLTPDLQSKSGALWNYSPVMTRNWEVHVGFKV HGKGTELFGDGFAIWYTKERMQTGPVFGSKDHFSGLAIILDTYSNHNGPH NHQHPYLSAMVNNGSWSYDHDRDGTHTQLAGCEVRFRNVEYETLVSIRYE NDILSVSTDLENRNEWKNCFVVANVELPTGYHFGMSATTGDLSDNHDIHS FKFYDLDLNVNHDEIIRRSNIIPNAKTFEPPREHKEDPKPGMSNAKIFFI LLFVVVVAAAVAIFAISYFKDRNARKRFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18890-PA | 327 | GF18890-PA | 19..327 | 19..329 | 1458 | 91 | Plus |
Dana\GF24333-PA | 513 | GF24333-PA | 54..253 | 52..251 | 413 | 41.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12366-PA | 329 | GG12366-PA | 1..329 | 1..329 | 1748 | 98.5 | Plus |
Dere\GG14323-PA | 512 | GG14323-PA | 53..252 | 52..251 | 396 | 39.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19087-PA | 325 | GH19087-PA | 29..325 | 33..329 | 1485 | 89.9 | Plus |
Dgri\GH22518-PA | 528 | GH22518-PA | 17..261 | 11..251 | 397 | 35.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5510-PA | 329 | CG5510-PA | 1..329 | 1..329 | 1780 | 100 | Plus |
ergic53-PB | 512 | CG6822-PB | 53..252 | 52..251 | 404 | 39.7 | Plus |
ergic53-PA | 512 | CG6822-PA | 53..252 | 52..251 | 404 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23425-PA | 325 | GI23425-PA | 10..325 | 11..329 | 1511 | 86.5 | Plus |
Dmoj\GI12907-PA | 527 | GI12907-PA | 17..261 | 11..251 | 408 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24136-PA | 325 | GL24136-PA | 1..325 | 1..329 | 1467 | 84.5 | Plus |
Dper\GL22531-PA | 210 | GL22531-PA | 54..181 | 52..182 | 294 | 42.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18939-PA | 325 | GA18939-PA | 1..325 | 1..329 | 1479 | 84.8 | Plus |
Dpse\GA27650-PA | 465 | GA27650-PA | 54..253 | 52..251 | 401 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23505-PA | 329 | GM23505-PA | 1..329 | 1..329 | 1760 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18315-PA | 329 | GD18315-PA | 1..329 | 1..329 | 1763 | 98.8 | Plus |
Dsim\GD14102-PA | 508 | GD14102-PA | 53..252 | 52..251 | 399 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14528-PA | 325 | GJ14528-PA | 4..325 | 5..329 | 1524 | 85.8 | Plus |
Dvir\GJ13048-PA | 527 | GJ13048-PA | 62..261 | 52..251 | 401 | 39.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11718-PA | 330 | GK11718-PA | 1..330 | 1..329 | 1446 | 82.5 | Plus |
Dwil\GK13314-PA | 524 | GK13314-PA | 60..259 | 52..251 | 407 | 40.2 | Plus |
Dwil\GK23131-PA | 421 | GK23131-PA | 60..238 | 52..251 | 344 | 37.4 | Plus |
Translation from 108 to 1097
> RE50040.hyp MTKPTREHCSLALLALLVAPFVVLGEDMPREPDYMKREHSLVRPFQGVGV ILPHWDFLGNTMVTSNYIRLTPDLQSKSGALWNYSPVMTRNWEVHVGFKV HGKGTELFGDGFAIWYTKERMQTGPVFGSKDHFSGLAIILDTYSNHNGPH NHQHPYLSAMVNNGSWSYDHDRDGTHTQLAGCEVRFRNVEYETLVSIRYE NDILSVSTDLENRNEWKNCFVVANVELPTGYHFGMSATTGDLSDNHDIHS FKFYDLDLNVNHDEIIRRSNIIPNAKTFEPPREHKEDPKPGMSNAKIFFI LLFVVVVAAAVAIFAISYFKDRNARKRFY*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5510-PA | 329 | CG5510-PA | 1..329 | 1..329 | 1780 | 100 | Plus |
ergic53-PB | 512 | CG6822-PB | 53..252 | 52..251 | 404 | 39.7 | Plus |
ergic53-PA | 512 | CG6822-PA | 53..252 | 52..251 | 404 | 39.7 | Plus |