BDGP Sequence Production Resources |
Search the DGRC for RE50082
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 500 |
Well: | 82 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Crc-RA |
Protein status: | RE50082.pep: gold |
Sequenced Size: | 1438 |
Gene | Date | Evidence |
---|---|---|
CG9429 | 2002-10-19 | Blastp of sequenced clone |
CG9429 | 2003-01-01 | Sim4 clustering to Release 3 |
Crc | 2008-04-29 | Release 5.5 accounting |
Crc | 2008-08-15 | Release 5.9 accounting |
Crc | 2008-12-18 | 5.12 accounting |
1438 bp (1438 high quality bases) assembled on 2002-10-19
GenBank Submission: BT001670
> RE50082.complete GGTACTTAACTTTAACCGAGTTCGGACAACCATCGGAGTTGGAAGAGTCA GTCCAAAAAGTGGTGCGGGATCGTTCACATGATGTGGTGCAAAACAGTGA TAGTGTTGCTGGCGACAGTCGGCTTTATTAGTGCCGAGGTTTATCTGAAG GAGAATTTCGACAACGAAAACTGGGAGGATACGTGGATCTACAGCAAACA TCCTGGCAAGGAGTTCGGAAAATTCGTCCTCACCCCCGGTACCTTCTACA ACGATGCTGAGGCCGACAAAGGCATTCAGACCTCTCAGGATGCTCGATTC TACGCGGCCAGCCGCAAGTTTGATGGCTTCTCCAACGAGGACAAGCCCCT CGTGGTGCAGTTCTCCGTGAAGCACGAGCAGAATATCGACTGCGGCGGCG GCTATGTGAAGCTGTTCGACTGCTCCCTCGACCAGACCGACATGCACGGC GAGTCGCCGTACGAGATCATGTTCGGCCCGGACATCTGCGGACCCGGCAC CAAGAAGGTCCATGTGATCTTCAGCTACAAGGGCAAGAACCACCTAATCA GCAAAGACATCCGCTGCAAAGATGACGTGTACACCCACTTCTACACGCTG ATTGTCAGACCCGACAACACGTACGAGGTGCTCATCGACAACGAGAAGGT GGAGTCTGGCAACCTGGAGGACGACTGGGACTTCCTGGCCCCCAAGAAGA TCAAGGATCCCACCGCCACCAAGCCCGAAGACTGGGACGATAGGGCCACC ATTCCCGATCCCGATGACAAGAAGCCCGAGGACTGGGACAAACCAGAGCA CATTCCCGACCCAGATGCCACAAAGCCTGAGGATTGGGACGATGAGATGG ACGGCGAGTGGGAGCCACCGATGATCGACAACCCTGAGTTCAAGGGCGAG TGGCAGCCAAAGCAGCTGGACAACCCCAACTACAAGGGCGCCTGGGAGCA TCCCGAGATCGCCAATCCCGAGTATGTGCCCGACGACAAGCTGTATCTGC GCAAGGAGATCTGCACCCTGGGCTTCGATCTCTGGCAGGTCAAGTCCGGC ACTATCTTCGACAACGTCCTGATCACGGACGACGTGGAGCTGGCCGCTAA GGCTGCTGCCGAAGTCAAGAACACCCAGGCGGGCGAGAAGAAAATGAAGG AGGCCCAGGATGAGGTGCAGCGCAAGAAGGACGAGGAGGAGGCGAAAAAG GCTTCCGACAAGGACGATGAGGACGAGGATGATGACGATGAGGAGAAGGA TGATGAATCTAAGCAAGACAAAGATCAAAGCGAACACGACGAATTGTAAG GACGTCTAGGGAAAATTACGTCGAGAAATATTCGGTATTTTTTGTGTGTT GGTAGCTGCTTTGATGTTCTAAGCAACGGAAACCACAATTACAATTTGTA AGACTTATAATTTATAAACATAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Crc-RA | 1960 | Crc-RA | 254..1675 | 2..1422 | 7070 | 99.9 | Plus |
Crc.e | 2012 | Crc.e | 133..1554 | 2..1422 | 7070 | 99.9 | Plus |
Crc.b | 1884 | Crc.b | 254..1406 | 2..1154 | 5765 | 100 | Plus |
Crc.b | 1884 | Crc.b | 1400..1636 | 1187..1422 | 1145 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 5454752..5455430 | 1421..744 | 3345 | 99.9 | Minus |
chr3R | 27901430 | chr3R | 5455521..5455996 | 745..270 | 2365 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 5456492..5456656 | 166..2 | 825 | 100 | Minus |
chr3R | 27901430 | chr3R | 5456262..5456368 | 272..166 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 9628937..9629616 | 1422..744 | 3350 | 99.9 | Minus |
3R | 32079331 | 3R | 9629707..9630182 | 745..270 | 2380 | 100 | Minus |
3R | 32079331 | 3R | 9630678..9630842 | 166..2 | 825 | 100 | Minus |
3R | 32079331 | 3R | 9630448..9630554 | 272..166 | 535 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9369768..9370447 | 1422..744 | 3360 | 99.8 | Minus |
3R | 31820162 | 3R | 9370538..9371013 | 745..270 | 2380 | 100 | Minus |
3R | 31820162 | 3R | 9371509..9371673 | 166..2 | 825 | 100 | Minus |
3R | 31820162 | 3R | 9371279..9371385 | 272..166 | 535 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 5454752..5454917 | 1257..1421 | 99 | == | Minus |
chr3R | 5455048..5455429 | 745..1126 | 100 | <- | Minus |
chr3R | 5455522..5455994 | 272..744 | 99 | <- | Minus |
chr3R | 5456263..5456367 | 167..271 | 100 | <- | Minus |
chr3R | 5456492..5456656 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 1..1221 | 79..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 1..1221 | 79..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 1..1221 | 79..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 1..1221 | 79..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 1..1221 | 79..1299 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 43..1464 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 43..1464 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 9..1430 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 43..1464 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Crc-RA | 9..1430 | 1..1421 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9630449..9630553 | 167..271 | 100 | <- | Minus |
3R | 9630678..9630842 | 1..166 | 99 | Minus | |
3R | 9628938..9629615 | 745..1421 | 99 | <- | Minus |
3R | 9629708..9630180 | 272..744 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9630449..9630553 | 167..271 | 100 | <- | Minus |
3R | 9630678..9630842 | 1..166 | 99 | Minus | |
3R | 9628938..9629615 | 745..1421 | 99 | <- | Minus |
3R | 9629708..9630180 | 272..744 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9630449..9630553 | 167..271 | 100 | <- | Minus |
3R | 9630678..9630842 | 1..166 | 99 | Minus | |
3R | 9628938..9629615 | 745..1421 | 99 | <- | Minus |
3R | 9629708..9630180 | 272..744 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 5454660..5455337 | 745..1421 | 99 | <- | Minus |
arm_3R | 5455430..5455902 | 272..744 | 100 | <- | Minus |
arm_3R | 5456171..5456275 | 167..271 | 100 | <- | Minus |
arm_3R | 5456400..5456564 | 1..166 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9369769..9370446 | 745..1421 | 99 | <- | Minus |
3R | 9370539..9371011 | 272..744 | 100 | <- | Minus |
3R | 9371280..9371384 | 167..271 | 100 | <- | Minus |
3R | 9371509..9371673 | 1..166 | 99 | Minus |
Translation from 78 to 1298
> RE50082.pep MMWCKTVIVLLATVGFISAEVYLKENFDNENWEDTWIYSKHPGKEFGKFV LTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHE QNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSY KGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDW DFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWDKPEHIPDPDATKP EDWDDEMDGEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYV PDDKLYLRKEICTLGFDLWQVKSGTIFDNVLITDDVELAAKAAAEVKNTQ AGEKKMKEAQDEVQRKKDEEEAKKASDKDDEDEDDDDEEKDDESKQDKDQ SEHDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18838-PA | 404 | GF18838-PA | 1..404 | 2..406 | 1925 | 91.6 | Plus |
Dana\GF22893-PA | 652 | GF22893-PA | 123..460 | 63..344 | 506 | 35.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17350-PA | 406 | GG17350-PA | 1..406 | 1..406 | 2126 | 99.5 | Plus |
Dere\GG12019-PA | 651 | GG12019-PA | 151..461 | 88..344 | 519 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19579-PA | 403 | GH19579-PA | 1..403 | 2..406 | 1743 | 81.5 | Plus |
Dgri\GH14000-PA | 598 | GH14000-PA | 114..451 | 63..344 | 528 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Calr-PB | 406 | CG9429-PB | 1..406 | 1..406 | 2237 | 100 | Plus |
Calr-PA | 406 | CG9429-PA | 1..406 | 1..406 | 2237 | 100 | Plus |
Cnx99A-PE | 604 | CG11958-PE | 149..551 | 88..397 | 570 | 32.7 | Plus |
CG1924-PA | 570 | CG1924-PA | 145..437 | 88..344 | 564 | 39.1 | Plus |
Cnx99A-PD | 605 | CG11958-PD | 149..552 | 88..397 | 560 | 32.8 | Plus |
Cnx99A-PB | 605 | CG11958-PB | 149..552 | 88..397 | 560 | 32.8 | Plus |
Cnx99A-PA | 605 | CG11958-PA | 149..552 | 88..397 | 560 | 32.8 | Plus |
Cnx14D-PA | 639 | CG9906-PA | 129..563 | 81..405 | 544 | 31.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23963-PA | 397 | GI23963-PA | 5..397 | 7..406 | 1653 | 79 | Plus |
Dmoj\GI22345-PA | 614 | GI22345-PA | 125..462 | 63..344 | 541 | 37.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21957-PA | 405 | GL21957-PA | 1..405 | 1..406 | 1828 | 86.9 | Plus |
Dper\GL13597-PA | 649 | GL13597-PA | 118..455 | 63..344 | 523 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27323-PB | 382 | GA27323-PB | 1..382 | 1..406 | 1668 | 81.3 | Plus |
Dpse\GA26840-PA | 607 | GA26840-PA | 118..455 | 63..344 | 525 | 37.1 | Plus |
Dpse\GA26840-PB | 649 | GA26840-PB | 118..455 | 63..344 | 523 | 37.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26236-PA | 406 | GM26236-PA | 1..406 | 1..406 | 2126 | 99.5 | Plus |
Dsec\GM13150-PA | 557 | GM13150-PA | 135..423 | 89..344 | 501 | 39.6 | Plus |
Dsec\GM13395-PA | 645 | GM13395-PA | 135..444 | 89..344 | 491 | 35.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20777-PA | 406 | GD20777-PA | 1..406 | 1..406 | 2127 | 99.8 | Plus |
Dsim\GD17820-PA | 648 | GD17820-PA | 149..459 | 88..344 | 522 | 37.8 | Plus |
Dsim\GD15935-PA | 551 | GD15935-PA | 134..417 | 88..344 | 476 | 38.9 | Plus |
Dsim\GD15746-PA | 355 | GD15746-PA | 2..129 | 233..344 | 237 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22515-PA | 403 | GJ22515-PA | 2..403 | 4..406 | 1777 | 83.6 | Plus |
Dvir\GJ14222-PA | 662 | GJ14222-PA | 125..462 | 63..344 | 529 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13913-PA | 403 | GK13913-PA | 5..403 | 7..406 | 1796 | 87 | Plus |
Dwil\GK11031-PA | 646 | GK11031-PA | 117..454 | 63..344 | 515 | 35.8 | Plus |
Dwil\GK17146-PA | 583 | GK17146-PA | 95..435 | 63..346 | 434 | 32 | Plus |
Translation from 78 to 1298
> RE50082.hyp MMWCKTVIVLLATVGFISAEVYLKENFDNENWEDTWIYSKHPGKEFGKFV LTPGTFYNDAEADKGIQTSQDARFYAASRKFDGFSNEDKPLVVQFSVKHE QNIDCGGGYVKLFDCSLDQTDMHGESPYEIMFGPDICGPGTKKVHVIFSY KGKNHLISKDIRCKDDVYTHFYTLIVRPDNTYEVLIDNEKVESGNLEDDW DFLAPKKIKDPTATKPEDWDDRATIPDPDDKKPEDWDKPEHIPDPDATKP EDWDDEMDGEWEPPMIDNPEFKGEWQPKQLDNPNYKGAWEHPEIANPEYV PDDKLYLRKEICTLGFDLWQVKSGTIFDNVLITDDVELAAKAAAEVKNTQ AGEKKMKEAQDEVQRKKDEEEAKKASDKDDEDEDDDDEEKDDESKQDKDQ SEHDEL*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Crc-PB | 406 | CG9429-PB | 1..406 | 1..406 | 2237 | 100 | Plus |
Crc-PA | 406 | CG9429-PA | 1..406 | 1..406 | 2237 | 100 | Plus |
Cnx99A-PE | 604 | CG11958-PE | 149..551 | 88..397 | 570 | 32.7 | Plus |
CG1924-PA | 570 | CG1924-PA | 145..437 | 88..344 | 564 | 39.1 | Plus |
Cnx99A-PD | 605 | CG11958-PD | 149..552 | 88..397 | 560 | 32.8 | Plus |