BDGP Sequence Production Resources |
Search the DGRC for RE50273
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 502 |
Well: | 73 |
Vector: | pFlc-1 |
Associated Gene/Transcript | cib-RA |
Protein status: | RE50273.pep: gold |
Preliminary Size: | 1273 |
Sequenced Size: | 909 |
Gene | Date | Evidence |
---|---|---|
CG4944 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4944 | 2002-02-22 | Blastp of sequenced clone |
CG4944 | 2003-01-01 | Sim4 clustering to Release 3 |
cib | 2008-04-29 | Release 5.5 accounting |
cib | 2008-08-15 | Release 5.9 accounting |
cib | 2008-12-18 | 5.12 accounting |
909 bp (909 high quality bases) assembled on 2002-02-22
GenBank Submission: AY089633
> RE50273.complete AGTGTTAAATTTGTGACGTCAAGAGCTCCGCTTCGCCACCATCGAAGGCC CAGCTTCGCCAAGTGTACAGCTATACATAGAAACATATATCAGGCCGACC CCGCCAGCATCCCAGCTTAGTAGTCCGCTTCGCCAATCCAAAAAAAAAAC TAAATCAAGATGGCCGCCCCAGCACCAGCACTCAAGGATCTGCCCAAGGT GGCCGAGAACCTGAAAAGCCAGTTGGAGGGATTCAACCAGGACAAACTGA AGAACGCTAGCACCCAGGAGAAGATCATTCTTCCCACCGCCGAAGATGTG GCTGCCGAGAAGACCCAACAGTCGATCTTCGAGGGCATCACCGCTTTCAA TCAGAACAACTTGAAGCACACGGAGACCAACGAGAAGAACCCGTTGCCCG ATAAGGAAGCCATCGAGCAGGAGAAGGAGAAGAATCAGTTCATCGCCGGC ATCGAGAACTTTGATGCGAAAAAGTTGAAGCACACCGAGACCAATGAGAA GAACGTGCTGCCCACCAAGGAGGTGATCGAGGCCGAGAAGCAGGCTTAAA ATGGGGGCTCCAATGTGGTCCACTCCGATCCGAGATCCGAGATCTGAGAT CCGATCCGATCCGATCCTCAGTCACCCCATCTCTCTTTTTCGACTCGCCG CATCTCACTCTTTATACGTATAAAGCTATTCCCTCTCATTTTTCAACTGC TACCAAGTTATTCGAACCGCTGCGCATGCGCGTGATAGCAAAAGTATTTT ACTATTATCGTATTTCGGTTGTCCGTTTTTTTTTTTTTGCAATATTTTTA CACATATATATATATATTTTTTGTATTAACAAGCAAGAGAGCCAGTCTCA TTCCTACAGCGTAATTAACATAAAATAAACATTCGTCTATCCCAAAAAAA AAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib-RA | 1007 | cib-RA | 109..1003 | 1..894 | 4420 | 99.7 | Plus |
cib.h | 1394 | cib.h | 109..1003 | 1..894 | 4420 | 99.7 | Plus |
cib.e | 1339 | cib.e | 549..1036 | 408..894 | 2400 | 99.7 | Plus |
cib.e | 1339 | cib.e | 1..409 | 1..409 | 2030 | 99.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 4003376..4003861 | 408..893 | 2430 | 100 | Plus |
chrX | 22417052 | chrX | 3999341..3999499 | 1..159 | 765 | 98.7 | Plus |
chrX | 22417052 | chrX | 4002913..4003050 | 158..295 | 690 | 100 | Plus |
chrX | 22417052 | chrX | 4003121..4003236 | 294..409 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 4110150..4110637 | 408..894 | 2390 | 99.8 | Plus |
X | 23542271 | X | 4106115..4106273 | 1..159 | 780 | 99.4 | Plus |
X | 23542271 | X | 4109687..4109824 | 158..295 | 690 | 100 | Plus |
X | 23542271 | X | 4109895..4110010 | 294..409 | 580 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 4118248..4118735 | 408..894 | 2400 | 99.7 | Plus |
X | 23527363 | X | 4114213..4114371 | 1..159 | 780 | 99.3 | Plus |
X | 23527363 | X | 4117785..4117922 | 158..295 | 690 | 100 | Plus |
X | 23527363 | X | 4117993..4118108 | 294..409 | 580 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 3999341..3999499 | 1..159 | 98 | -> | Plus |
chrX | 4002915..4003050 | 160..295 | 100 | -> | Plus |
chrX | 4003123..4003236 | 296..409 | 100 | -> | Plus |
chrX | 4003378..4003861 | 410..893 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RB | 1..390 | 160..549 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RA | 1..894 | 1..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RA | 1..894 | 1..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RA | 3..896 | 1..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RA | 1..894 | 1..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
cib-RA | 3..896 | 1..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4106115..4106273 | 1..159 | 99 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4110152..4110636 | 410..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4106115..4106273 | 1..159 | 99 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4110152..4110636 | 410..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4106115..4106273 | 1..159 | 99 | -> | Plus |
X | 4109689..4109824 | 160..295 | 100 | -> | Plus |
X | 4109897..4110010 | 296..409 | 100 | -> | Plus |
X | 4110152..4110636 | 410..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 4003930..4004043 | 296..409 | 100 | -> | Plus |
arm_X | 4000148..4000306 | 1..159 | 99 | -> | Plus |
arm_X | 4003722..4003857 | 160..295 | 100 | -> | Plus |
arm_X | 4004185..4004669 | 410..893 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 4118250..4118734 | 410..893 | 99 | Plus | |
X | 4114213..4114371 | 1..159 | 99 | -> | Plus |
X | 4117787..4117922 | 160..295 | 100 | -> | Plus |
X | 4117995..4118108 | 296..409 | 100 | -> | Plus |
Translation from 159 to 548
> RE50273.pep MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEAIEQEKEKNQFIAGIEN FDAKKLKHTETNEKNVLPTKEVIEAEKQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20776-PA | 130 | GF20776-PA | 1..130 | 1..129 | 601 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG18692-PA | 129 | GG18692-PA | 1..129 | 1..129 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24145-PA | 129 | GH24145-PA | 1..129 | 1..129 | 605 | 94.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib-PE | 129 | CG4944-PE | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PD | 129 | CG4944-PD | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PB | 129 | CG4944-PB | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PA | 129 | CG4944-PA | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PC | 97 | CG4944-PC | 1..88 | 1..88 | 422 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16398-PA | 129 | GI16398-PA | 1..129 | 1..129 | 609 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21390-PA | 129 | GL21390-PA | 1..129 | 1..129 | 611 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18544-PA | 129 | GA18544-PA | 1..129 | 1..129 | 611 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12325-PA | 129 | GM12325-PA | 1..129 | 1..129 | 640 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD16670-PA | 129 | GD16670-PA | 1..129 | 1..129 | 635 | 99.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17019-PA | 129 | GJ17019-PA | 1..129 | 1..129 | 595 | 93 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15570-PA | 143 | GK15570-PA | 15..143 | 1..129 | 613 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE16331-PA | 129 | GE16331-PA | 1..129 | 1..129 | 640 | 100 | Plus |
Translation from 159 to 548
> RE50273.hyp MAAPAPALKDLPKVAENLKSQLEGFNQDKLKNASTQEKIILPTAEDVAAE KTQQSIFEGITAFNQNNLKHTETNEKNPLPDKEAIEQEKEKNQFIAGIEN FDAKKLKHTETNEKNVLPTKEVIEAEKQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
cib-PE | 129 | CG4944-PE | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PD | 129 | CG4944-PD | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PB | 129 | CG4944-PB | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PA | 129 | CG4944-PA | 1..129 | 1..129 | 650 | 100 | Plus |
cib-PC | 97 | CG4944-PC | 1..88 | 1..88 | 422 | 95.5 | Plus |