BDGP Sequence Production Resources |
Search the DGRC for RE50319
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 503 |
Well: | 19 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RNaseX25-RA |
Protein status: | RE50319.pep: gold |
Sequenced Size: | 1673 |
Gene | Date | Evidence |
---|---|---|
CG8194 | 2003-01-01 | Sim4 clustering to Release 3 |
CG8194 | 2004-10-25 | Blastp of sequenced clone |
RNaseX25 | 2008-04-29 | Release 5.5 accounting |
RNaseX25 | 2008-08-15 | Release 5.9 accounting |
RNaseX25 | 2008-12-18 | 5.12 accounting |
1673 bp (1673 high quality bases) assembled on 2004-10-25
GenBank Submission: BT015993
> RE50319.complete ATGCAGGAACTCGATATATCGATACCATCTACGGATTTTGCATCGCAGTT ATTATTATTATTTTTTTACAACAAAATGCAGAGCCAGCGGTTTCTATTCG TGGCCATTTTGGCCTGTTTTCTGGTGACTATCAAATCCACGCCCCTCAGC GACATATCGTATTCGGATGAATCGACTTCGGTGAATGAGAAGACACAGAA ACGTCCAGACGATGACAGTGAATTCGATGGTTTCCCCTTTCGGGAAGATG ATGATTCTCTGCAAGACTCGTCGAGGGAGATGTCTGTGCAGGATCACAAC TGGGATGTGCTGATTTTCACGCAACAATGGCCGGTGACCACTTGCTATCA TTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGTCTGCCCCAGAAGAAGG AGTTCTGGACCATTCACGGCATCTGGCCAACGAAACTGCACCAAATGGGA CCGAATTTCTGCAATAACTCGGCCAACTTTGATCCAAGCAAACTGAATCC CATTGAGGATCGACTGGAGACCTTTTGGCCGGATCTCAAAGGCATGGACT CCACGGAGTGGCTTTGGAAACACGAGTGGCAGAAGCACGGAACATGCGCC ATGCTGGTGGAGGAACTGGACAACGAACTCAAGTACTTCGAGCAGGGGCT CACTTGGCGTGAGGAGTACATCATGTCGCGCATTCTAGACGCCTCGGACA TCCATCCCGATTCCAACAATACGGTGGCGGCCATCAATAATGCGATAGTC AAGGCACTAGGGAAGAATCCGTCCATCCACTGCCTGTACGATGGCAAACA CGGCATCAGCTATCTATCGGAGATTCGCATTTGCTTTAGCAAATCCCTGG AGCTCATCGACTGCGATGGTATCAAGCAGGGCGATGCTGTGCCCGTTGGT GTTCCTGGTGGCACTATCATTACTAATTGCCACATCGGTAGCCTCGTGCA CTATCCCAGCCTGGTGCCACCGCTACAAAGGAAAAGCCATTGGAAGTTAC CGCTCGTAAACGTCTACAAGTTGCTGCAATTCCTCATGTGGTTCACCTTG TAAACAGGTCGTTGTGTAACCCAAGCTGGGAAGTATTTTGAGGCGCGCCT TAGGAGGACTCATCGTTAACTCCAATTTTATTTGATACTTCCACTGATTT GGTGTGCTGGAGATTCGGAGCTTAACAATCATAAACGAACTAAAACACTC GTTTTTATATAGCTGCAAAACTAGTAAATTATAAAAAAAAAGATGTCATA TTTTATAATATATACTTAAAAGGATCTACCAATTTATACATTTATTGTTT GGTTATCCATCCACAATTCGATAGGATTATATTGTACTAAATTCTAAACA TCGTACGATGTTAACCAATCTGTATTTGATTTCACACTTATTAGTTTGTA AGCTCTCCTTTGTTGACATTAACTTTGTTTTGTTTCTATTTAAAGCTTAT AAGCATGAACTCCCCCCTTAAAAGACATTCATTGTGAATATATTTGTATT TCAAACTCATATATACTATTTCTGTGACGATTACCTAATTGTTCTATTGA ATTTCAGTTTAATTTCAGCTGCATAAAACTGACCAAGCTGTCCAATCATA CTGTATCTCTTACTAGTTACTAAGATCACATTTGTTTGATTAAAACACAT CGAATTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RNaseX25-RA | 1688 | RNaseX25-RA | 24..1678 | 4..1658 | 8260 | 99.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Tc3 | 1743 | Tc3 TC3 1743bp | 1418..1577 | 1392..1225 | 120 | 59 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 7962752..7962900 | 1..149 | 97 | -> | Plus |
chr3L | 7963100..7964607 | 150..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 1..978 | 76..1053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 1..978 | 76..1053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 1..978 | 76..1053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 1..978 | 76..1053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 1..978 | 76..1053 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 2..1658 | 1..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 2..1658 | 1..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 7..1663 | 1..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 2..1658 | 1..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RNaseX25-RA | 7..1663 | 1..1657 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7970594..7970742 | 1..149 | 98 | -> | Plus |
3L | 7970942..7972449 | 150..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7970594..7970742 | 1..149 | 98 | -> | Plus |
3L | 7970942..7972449 | 150..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7970594..7970742 | 1..149 | 98 | -> | Plus |
3L | 7970942..7972449 | 150..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 7963694..7963842 | 1..149 | 98 | -> | Plus |
arm_3L | 7964042..7965549 | 150..1657 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 7964042..7965549 | 150..1657 | 100 | Plus | |
3L | 7963694..7963842 | 1..149 | 98 | -> | Plus |
Translation from 0 to 1052
> RE50319.pep MQELDISIPSTDFASQLLLLFFYNKMQSQRFLFVAILACFLVTIKSTPLS DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF23803-PA | 329 | GF23803-PA | 1..329 | 26..350 | 1388 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14458-PA | 325 | GG14458-PA | 1..325 | 26..350 | 1626 | 91.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14984-PA | 376 | GH14984-PA | 61..376 | 41..350 | 1043 | 62.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RNaseX25-PA | 325 | CG8194-PA | 1..325 | 26..350 | 1789 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13146-PA | 336 | GI13146-PA | 5..336 | 29..350 | 1113 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL18046-PA | 385 | GL18046-PA | 69..385 | 51..350 | 1217 | 73.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20886-PA | 342 | GA20886-PA | 1..342 | 26..350 | 1234 | 71.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25008-PA | 325 | GM25008-PA | 1..325 | 26..350 | 1717 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\RNaseX25-PA | 325 | GD14044-PA | 1..325 | 26..350 | 1720 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13895-PA | 337 | GJ13895-PA | 2..337 | 25..350 | 1120 | 61.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20586-PA | 339 | GK20586-PA | 1..339 | 26..350 | 1158 | 66.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21648-PA | 325 | GE21648-PA | 1..325 | 26..350 | 1679 | 95.4 | Plus |
Translation from 0 to 1052
> RE50319.hyp IQELDISIPSTDFASQLLLLLFYNKMQSQRFLFVAILACFLVTIKSTPLS DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL *
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RNaseX25-PA | 325 | CG8194-PA | 1..325 | 26..350 | 1789 | 100 | Plus |