Clone RE50319 Report

Search the DGRC for RE50319

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:503
Well:19
Vector:pFlc-1
Associated Gene/TranscriptRNaseX25-RA
Protein status:RE50319.pep: gold
Sequenced Size:1673

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8194 2003-01-01 Sim4 clustering to Release 3
CG8194 2004-10-25 Blastp of sequenced clone
RNaseX25 2008-04-29 Release 5.5 accounting
RNaseX25 2008-08-15 Release 5.9 accounting
RNaseX25 2008-12-18 5.12 accounting

Clone Sequence Records

RE50319.complete Sequence

1673 bp (1673 high quality bases) assembled on 2004-10-25

GenBank Submission: BT015993

> RE50319.complete
ATGCAGGAACTCGATATATCGATACCATCTACGGATTTTGCATCGCAGTT
ATTATTATTATTTTTTTACAACAAAATGCAGAGCCAGCGGTTTCTATTCG
TGGCCATTTTGGCCTGTTTTCTGGTGACTATCAAATCCACGCCCCTCAGC
GACATATCGTATTCGGATGAATCGACTTCGGTGAATGAGAAGACACAGAA
ACGTCCAGACGATGACAGTGAATTCGATGGTTTCCCCTTTCGGGAAGATG
ATGATTCTCTGCAAGACTCGTCGAGGGAGATGTCTGTGCAGGATCACAAC
TGGGATGTGCTGATTTTCACGCAACAATGGCCGGTGACCACTTGCTATCA
TTGGCGCGAGGAGAATCCCGACCAGGAGTGCAGTCTGCCCCAGAAGAAGG
AGTTCTGGACCATTCACGGCATCTGGCCAACGAAACTGCACCAAATGGGA
CCGAATTTCTGCAATAACTCGGCCAACTTTGATCCAAGCAAACTGAATCC
CATTGAGGATCGACTGGAGACCTTTTGGCCGGATCTCAAAGGCATGGACT
CCACGGAGTGGCTTTGGAAACACGAGTGGCAGAAGCACGGAACATGCGCC
ATGCTGGTGGAGGAACTGGACAACGAACTCAAGTACTTCGAGCAGGGGCT
CACTTGGCGTGAGGAGTACATCATGTCGCGCATTCTAGACGCCTCGGACA
TCCATCCCGATTCCAACAATACGGTGGCGGCCATCAATAATGCGATAGTC
AAGGCACTAGGGAAGAATCCGTCCATCCACTGCCTGTACGATGGCAAACA
CGGCATCAGCTATCTATCGGAGATTCGCATTTGCTTTAGCAAATCCCTGG
AGCTCATCGACTGCGATGGTATCAAGCAGGGCGATGCTGTGCCCGTTGGT
GTTCCTGGTGGCACTATCATTACTAATTGCCACATCGGTAGCCTCGTGCA
CTATCCCAGCCTGGTGCCACCGCTACAAAGGAAAAGCCATTGGAAGTTAC
CGCTCGTAAACGTCTACAAGTTGCTGCAATTCCTCATGTGGTTCACCTTG
TAAACAGGTCGTTGTGTAACCCAAGCTGGGAAGTATTTTGAGGCGCGCCT
TAGGAGGACTCATCGTTAACTCCAATTTTATTTGATACTTCCACTGATTT
GGTGTGCTGGAGATTCGGAGCTTAACAATCATAAACGAACTAAAACACTC
GTTTTTATATAGCTGCAAAACTAGTAAATTATAAAAAAAAAGATGTCATA
TTTTATAATATATACTTAAAAGGATCTACCAATTTATACATTTATTGTTT
GGTTATCCATCCACAATTCGATAGGATTATATTGTACTAAATTCTAAACA
TCGTACGATGTTAACCAATCTGTATTTGATTTCACACTTATTAGTTTGTA
AGCTCTCCTTTGTTGACATTAACTTTGTTTTGTTTCTATTTAAAGCTTAT
AAGCATGAACTCCCCCCTTAAAAGACATTCATTGTGAATATATTTGTATT
TCAAACTCATATATACTATTTCTGTGACGATTACCTAATTGTTCTATTGA
ATTTCAGTTTAATTTCAGCTGCATAAAACTGACCAAGCTGTCCAATCATA
CTGTATCTCTTACTAGTTACTAAGATCACATTTGTTTGATTAAAACACAT
CGAATTGAAAAAAAAAAAAAAAA

RE50319.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:55:44
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-RA 1688 RNaseX25-RA 24..1678 4..1658 8260 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:08:49
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 7963097..7964607 147..1657 7480 99.7 Plus
chr3L 24539361 chr3L 7962758..7962900 7..149 700 99.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:29 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:08:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 7970939..7972450 147..1658 7560 100 Plus
3L 28110227 3L 7970597..7970742 4..149 715 99.3 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 7964039..7965550 147..1658 7560 100 Plus
3L 28103327 3L 7963697..7963842 4..149 715 99.3 Plus
Blast to na_te.dros performed 2019-03-16 20:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
Tc3 1743 Tc3 TC3 1743bp 1418..1577 1392..1225 120 59 Minus

RE50319.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:09:32 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 7962752..7962900 1..149 97 -> Plus
chr3L 7963100..7964607 150..1657 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:45 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..978 76..1053 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:28:57 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..978 76..1053 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:15 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..978 76..1053 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:12:54 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..978 76..1053 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:53:46 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 1..978 76..1053 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:32:39 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..1658 1..1657 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:28:57 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..1658 1..1657 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:15 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 7..1663 1..1657 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:12:56 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 2..1658 1..1657 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:46 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
RNaseX25-RA 7..1663 1..1657 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:32 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7970594..7970742 1..149 98 -> Plus
3L 7970942..7972449 150..1657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:32 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7970594..7970742 1..149 98 -> Plus
3L 7970942..7972449 150..1657 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:09:32 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7970594..7970742 1..149 98 -> Plus
3L 7970942..7972449 150..1657 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:15 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 7963694..7963842 1..149 98 -> Plus
arm_3L 7964042..7965549 150..1657 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:49:32 Download gff for RE50319.complete
Subject Subject Range Query Range Percent Splice Strand
3L 7964042..7965549 150..1657 100   Plus
3L 7963694..7963842 1..149 98 -> Plus

RE50319.pep Sequence

Translation from 0 to 1052

> RE50319.pep
MQELDISIPSTDFASQLLLLFFYNKMQSQRFLFVAILACFLVTIKSTPLS
DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN
WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG
PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA
MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV
KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG
VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL
*

RE50319.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 17:34:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF23803-PA 329 GF23803-PA 1..329 26..350 1388 78.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 17:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14458-PA 325 GG14458-PA 1..325 26..350 1626 91.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 17:34:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14984-PA 376 GH14984-PA 61..376 41..350 1043 62.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:45
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-PA 325 CG8194-PA 1..325 26..350 1789 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 17:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13146-PA 336 GI13146-PA 5..336 29..350 1113 63.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 17:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18046-PA 385 GL18046-PA 69..385 51..350 1217 73.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 17:34:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20886-PA 342 GA20886-PA 1..342 26..350 1234 71.4 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25008-PA 325 GM25008-PA 1..325 26..350 1717 97.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 17:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\RNaseX25-PA 325 GD14044-PA 1..325 26..350 1720 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 17:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ13895-PA 337 GJ13895-PA 2..337 25..350 1120 61.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 17:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20586-PA 339 GK20586-PA 1..339 26..350 1158 66.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 17:34:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21648-PA 325 GE21648-PA 1..325 26..350 1679 95.4 Plus

RE50319.hyp Sequence

Translation from 0 to 1052

> RE50319.hyp
IQELDISIPSTDFASQLLLLLFYNKMQSQRFLFVAILACFLVTIKSTPLS
DISYSDESTSVNEKTQKRPDDDSEFDGFPFREDDDSLQDSSREMSVQDHN
WDVLIFTQQWPVTTCYHWREENPDQECSLPQKKEFWTIHGIWPTKLHQMG
PNFCNNSANFDPSKLNPIEDRLETFWPDLKGMDSTEWLWKHEWQKHGTCA
MLVEELDNELKYFEQGLTWREEYIMSRILDASDIHPDSNNTVAAINNAIV
KALGKNPSIHCLYDGKHGISYLSEIRICFSKSLELIDCDGIKQGDAVPVG
VPGGTIITNCHIGSLVHYPSLVPPLQRKSHWKLPLVNVYKLLQFLMWFTL
*

RE50319.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
RNaseX25-PA 325 CG8194-PA 1..325 26..350 1789 100 Plus