BDGP Sequence Production Resources |
Search the DGRC for RE50353
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 503 |
Well: | 53 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Bdbt-RA |
Protein status: | RE50353.pep: gold |
Sequenced Size: | 1010 |
Gene | Date | Evidence |
---|---|---|
CG17282 | 2003-01-01 | Sim4 clustering to Release 3 |
CG17282 | 2004-01-09 | Blastp of sequenced clone |
CG17282 | 2008-04-29 | Release 5.5 accounting |
CG17282 | 2008-08-15 | Release 5.9 accounting |
CG17282 | 2008-12-18 | 5.12 accounting |
1010 bp (1010 high quality bases) assembled on 2004-01-09
GenBank Submission: BT011371
> RE50353.complete ATCGGCAAATCGCAAACTTTGCTTACTGCTAAATTTCGAAGCTCCCAATT TGCAAATATTCCAAAATGGACTGGTACGTGGGCACAGAGTGGGAGGACAA GAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATGG ACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGCC ACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCGC TACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCAG TGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAACG GCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAACT GAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCTG CAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCACC TTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAAA GTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAATG GCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAAC CTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACCA CACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTACC GGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGCC ACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGCT GCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAGG AGGTGGTGCAACGTATGTTTAGTTAGTTCCCATTGATAACATTGCGATGT CGTGTTAACCAATGGTCTTTATAAAATAGCTTATGTTAAATGTTAAAAAA AAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 16941709..16942701 | 993..1 | 4815 | 99 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 21117857..21118849 | 993..1 | 4935 | 99.8 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 20858688..20859680 | 993..1 | 4935 | 99.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 16941708..16942701 | 1..994 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..861 | 66..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..861 | 66..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..861 | 66..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..861 | 66..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bdbt-RA | 1..861 | 66..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..926 | 1..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..993 | 1..993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 8..1000 | 1..993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG17282-RA | 1..926 | 1..926 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Bdbt-RA | 8..1000 | 1..993 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21117856..21118849 | 1..994 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21117856..21118849 | 1..994 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 21117856..21118849 | 1..994 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 16943578..16944571 | 1..994 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 20858687..20859680 | 1..994 | 99 | Minus |
Translation from 65 to 925
> RE50353.pep MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF18515-PA | 286 | GF18515-PA | 1..286 | 1..286 | 1304 | 83.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14872-PA | 286 | GG14872-PA | 1..286 | 1..286 | 1430 | 93.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19327-PA | 280 | GH19327-PA | 1..280 | 1..286 | 1046 | 67.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Bdbt-PA | 286 | CG17282-PA | 1..286 | 1..286 | 1465 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23937-PA | 282 | GI23937-PA | 1..282 | 1..286 | 1065 | 66.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL22032-PA | 286 | GL22032-PA | 1..286 | 1..286 | 1221 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14438-PA | 286 | GA14438-PA | 1..286 | 1..286 | 1221 | 76.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15100-PA | 286 | GM15100-PA | 1..286 | 1..286 | 1472 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23726-PA | 282 | GJ23726-PA | 1..282 | 1..286 | 1115 | 72.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13502-PA | 280 | GK13502-PA | 1..280 | 1..286 | 1113 | 72.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25016-PA | 286 | GE25016-PA | 1..286 | 1..286 | 1456 | 95.1 | Plus |
Translation from 65 to 925
> RE50353.hyp MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Bdbt-PA | 286 | CG17282-PA | 1..286 | 1..286 | 1465 | 100 | Plus |