Clone RE50353 Report

Search the DGRC for RE50353

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:503
Well:53
Vector:pFlc-1
Associated Gene/TranscriptBdbt-RA
Protein status:RE50353.pep: gold
Sequenced Size:1010

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17282 2003-01-01 Sim4 clustering to Release 3
CG17282 2004-01-09 Blastp of sequenced clone
CG17282 2008-04-29 Release 5.5 accounting
CG17282 2008-08-15 Release 5.9 accounting
CG17282 2008-12-18 5.12 accounting

Clone Sequence Records

RE50353.complete Sequence

1010 bp (1010 high quality bases) assembled on 2004-01-09

GenBank Submission: BT011371

> RE50353.complete
ATCGGCAAATCGCAAACTTTGCTTACTGCTAAATTTCGAAGCTCCCAATT
TGCAAATATTCCAAAATGGACTGGTACGTGGGCACAGAGTGGGAGGACAA
GAACCGTGGTCTGGCCAAGAAGGTAATTGGCCTCCAATTCACCGAAATGG
ACAAGCCCACGATAATCAGTACGGTGGAATTCAGTGTCAACAAGAAAGCC
ACCAACTTGGGAGGACGACCTAGCAAATATTTGGTCAGCGATGAGTCCGC
TACGTATCCTCAAAAGCACAGCCTGGAAATGGGCACCAGCCTGACCGCAG
TGGACTGCTACTTGGAGCTGCTGCTGCAGCAATTTGTGCCGGGTGAAACG
GCAGCCTGTAGCATCACGACAAAAACCGGCGAACGAATAGAATTTGAACT
GAAGCTGGAGAAAATTGTGAAGAACACTCAGGTGGAGAAGCTAAGCGCTG
CAGAGATCTATGAGGTGGCACTACGTCTCAAGGAAAGCGGCGTGGCCACC
TTTAAGACGTTCCCGAAATTCGCCTTTGATTACTTTGTGCGTGCCGCAAA
GTTGCTGATCACCTACAAACCCTTCGATAAACTGACCAAAAAGACCAATG
GCATCAACGGCCAGGCGGTGGAGGAGCTCTTTATTCAGATACAGACCAAC
CTGGCCGCCTGTTTGCTGCAGGAGAAACGCTATGAGCATGTAATCTACCA
CACGCAGTTTGTGGAGACGGAGGAGAGTCCCAGCGAGAAGAGCATCTACC
GGCGTGCACTCGCCTACTATCACCTGAAGGAGTTCGCCAAGGCGCAAGCC
ACCATCGAGCGAATGCCCAACTACGAGGAGAAGCGAGAGTTCAGCAAGCT
GCGCGACAACATCGCTGTTAGCTGGAAGGATAGCAAGGCCCATTACAAGG
AGGTGGTGCAACGTATGTTTAGTTAGTTCCCATTGATAACATTGCGATGT
CGTGTTAACCAATGGTCTTTATAAAATAGCTTATGTTAAATGTTAAAAAA
AAAAAAAAAA

RE50353.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:11:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17282-RA 993 CG17282-RA 1..993 1..993 4935 99.7 Plus
ppan-RA 1581 ppan-RA 1473..1581 993..885 545 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 16941709..16942701 993..1 4815 99 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:32 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 21117857..21118849 993..1 4935 99.8 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:54:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 20858688..20859680 993..1 4935 99.7 Minus
Blast to na_te.dros performed on 2019-03-15 22:47:01 has no hits.

RE50353.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:12 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 16941708..16942701 1..994 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:49 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..861 66..926 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:43:30 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..861 66..926 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:52 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..861 66..926 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:32:19 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..861 66..926 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:29 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
Bdbt-RA 1..861 66..926 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:53:44 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..926 1..926 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:43:29 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..993 1..993 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:52 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 8..1000 1..993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:32:20 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
CG17282-RA 1..926 1..926 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:29 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
Bdbt-RA 8..1000 1..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:12 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21117856..21118849 1..994 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:12 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21117856..21118849 1..994 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:12 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 21117856..21118849 1..994 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:52 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16943578..16944571 1..994 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:04:56 Download gff for RE50353.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20858687..20859680 1..994 99   Minus

RE50353.pep Sequence

Translation from 65 to 925

> RE50353.pep
MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG
RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI
TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP
KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL
LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM
PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFS*

RE50353.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 18:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF18515-PA 286 GF18515-PA 1..286 1..286 1304 83.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 18:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14872-PA 286 GG14872-PA 1..286 1..286 1430 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 18:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19327-PA 280 GH19327-PA 1..280 1..286 1046 67.1 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Bdbt-PA 286 CG17282-PA 1..286 1..286 1465 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 18:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23937-PA 282 GI23937-PA 1..282 1..286 1065 66.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 18:33:28
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL22032-PA 286 GL22032-PA 1..286 1..286 1221 76.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14438-PA 286 GA14438-PA 1..286 1..286 1221 76.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 18:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM15100-PA 286 GM15100-PA 1..286 1..286 1472 95.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 18:33:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23726-PA 282 GJ23726-PA 1..282 1..286 1115 72.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 18:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13502-PA 280 GK13502-PA 1..280 1..286 1113 72.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 18:33:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25016-PA 286 GE25016-PA 1..286 1..286 1456 95.1 Plus

RE50353.hyp Sequence

Translation from 65 to 925

> RE50353.hyp
MDWYVGTEWEDKNRGLAKKVIGLQFTEMDKPTIISTVEFSVNKKATNLGG
RPSKYLVSDESATYPQKHSLEMGTSLTAVDCYLELLLQQFVPGETAACSI
TTKTGERIEFELKLEKIVKNTQVEKLSAAEIYEVALRLKESGVATFKTFP
KFAFDYFVRAAKLLITYKPFDKLTKKTNGINGQAVEELFIQIQTNLAACL
LQEKRYEHVIYHTQFVETEESPSEKSIYRRALAYYHLKEFAKAQATIERM
PNYEEKREFSKLRDNIAVSWKDSKAHYKEVVQRMFS*

RE50353.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:16:11
Subject Length Description Subject Range Query Range Score Percent Strand
Bdbt-PA 286 CG17282-PA 1..286 1..286 1465 100 Plus