Clone RE50359 Report

Search the DGRC for RE50359

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:503
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG1418-RB
Protein status:RE50359.pep: wuzgold
Sequenced Size:1150

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1418 2004-03-31 Blastp of sequenced clone
CG1418 2008-04-29 Release 5.5 accounting
CG1418 2008-08-15 Release 5.9 accounting
CG1418 2008-12-18 5.12 accounting

Clone Sequence Records

RE50359.complete Sequence

1150 bp (1150 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012668

> RE50359.complete
GTGCGTCACGGCAACGGCAATCCTAGAACTATCTGCCACATCAGATTTTT
CAAACTTTGTATACTGTTTCTCAAAAGAAAACGATGTCATAGCAAATTAA
GAGTGAATCGTAAAATCAACATCGAAAGTGTTGCCGCCTCCATGTAGAAG
TGACCCCGCTAAAGTCCTCGCCGCTTTACAAACGCCGCAGCATCCTCAAG
ACAGTTCTTGGACCAAGTGGAACGAATCCAAAGATACACATAACACTTGT
GGAACGCCCACACTTGTCGAAAGAAGAATTGTAGATTGCAGCGAAGACGT
GTATCTAAGATAAGTGTTAGGACGAGGTTGGGAAAGCACAAGCAAAATGG
CACACACTGGCGGGAACCTATCCGGTAACATGCAGCCGCCACCGCCTTCC
GGAGGCAGGTTCTCCGTGGACATGCAAAGCCTGCCCTCGCTATCCAACCT
GCCATCACCGCTGCAGATCTTCCAAATGGTCCGAAACTCCCTGCGGCCCT
GGGTAGTCTTCTTCAACATCAACAATTTCAAAACGGCCATCAGCATGCAG
CGGCTAAATAGCCGGGTTATTCGGAATCTCTCCTATTTTCAGGCCAACTA
CGTTTTCATCTTTTTTGTACTGATGATATACTGCCTTTATAATCTTAAGC
ATCACGGCTCCCTGCATTCTGCTGGTCATCCTGGCTTCCGCTTTTGGCTG
CCATAAGCTGCGCGTGCGCAACAGTAACATTACCATCGTGGGACAACAAT
TGACGCCCAGCCAGCAGATCATCGCACTCAATCTGGCGACGGCACCAGTG
CTATTCCTGGTGGGCGCGGGTGCGGTTTTGTTTTGGACGCTGGGTGCTTC
ATGCTTCGTGATTGCTATGCATGCTATATTCTACAACATCGATGCTATTG
TAACGGAGGAGAATGAGGGTTTCCTCGCCCAGGTTGTCTGACCGCCAGCC
AGAAGCTAAACCCTAGGTCTTCTGGGATCGTGGCAACCAGGGACGAGGAA
AGGGGCTAAACATATTCGCCACTATGGGGCCTTGCAAGTCGACACAATAT
GTTGTACACCTATTTATAACGAAATCTAGTTAAGCCGCAGACTTTAAATA
ATCGAAATACACACTATGACAGATTCATACGACTAAAAAAAAAAAAAAAA

RE50359.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1418-RA 1165 CG1418-RA 38..670 4..636 3165 100 Plus
CG1418-RA 1165 CG1418-RA 671..1156 650..1135 2415 99.7 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:05
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 5851336..5851833 1134..637 2475 99.8 Minus
chr2R 21145070 chr2R 5852133..5852558 429..4 2115 99.8 Minus
chr2R 21145070 chr2R 5851874..5852082 636..428 1030 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:03
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9963836..9964334 1135..637 2480 99.8 Minus
2R 25286936 2R 9964634..9965059 429..4 2130 100 Minus
2R 25286936 2R 9964375..9964583 636..428 1045 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 9965035..9965533 1135..637 2480 99.7 Minus
2R 25260384 2R 9965833..9966258 429..4 2130 100 Minus
2R 25260384 2R 9965574..9965782 636..428 1045 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:47:04 has no hits.

RE50359.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:14 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 5852133..5852561 1..429 99   Minus
chr2R 5851336..5851833 637..1134 99 <- Minus
chr2R 5851874..5852080 430..636 99 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:50 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..582 347..941 97   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:48 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..582 347..941 97   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:31:55 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..582 347..941 97   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:37 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..582 347..941 97   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:31 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..582 347..941 97   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:36 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..1114 3..1127 98   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:48 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..1121 3..1134 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:31:55 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RB 6..1139 1..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:37 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 1..1114 3..1127 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:31 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
CG1418-RA 6..1126 1..1134 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:14 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9963837..9964334 637..1134 99 <- Minus
2R 9964375..9964581 430..636 100 <- Minus
2R 9964634..9965062 1..429 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:14 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9963837..9964334 637..1134 99 <- Minus
2R 9964375..9964581 430..636 100 <- Minus
2R 9964634..9965062 1..429 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:14 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9963837..9964334 637..1134 99 <- Minus
2R 9964375..9964581 430..636 100 <- Minus
2R 9964634..9965062 1..429 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:31:55 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5851342..5851839 637..1134 99 <- Minus
arm_2R 5851880..5852086 430..636 100 <- Minus
arm_2R 5852139..5852567 1..429 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:01 Download gff for RE50359.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9965036..9965533 637..1134 99 <- Minus
2R 9965574..9965780 430..636 100 <- Minus
2R 9965833..9966261 1..429 99   Minus

RE50359.pep Sequence

Translation from 346 to 705

> RE50359.pep
MAHTGGNLSGNMQPPPPSGGRFSVDMQSLPSLSNLPSPLQIFQMVRNSLR
PWVVFFNINNFKTAISMQRLNSRVIRNLSYFQANYVFIFFVLMIYCLYNL
KHHGSLHSAGHPGFRFWLP*

RE50359.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:27:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11298-PA 194 GF11298-PA 1..98 1..97 415 81.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25243-PA 193 GG25243-PA 1..97 1..97 463 91.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:27:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH20444-PA 194 GH20444-PA 1..98 1..97 320 63.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1418-PA 193 CG1418-PA 1..97 1..97 508 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19271-PA 193 GI19271-PA 1..100 1..97 334 62 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:27:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17704-PA 193 GL17704-PA 1..97 1..97 343 62.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:27:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12807-PA 193 GA12807-PA 1..97 1..97 343 62.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20563-PA 193 GM20563-PA 1..97 1..97 496 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD10035-PA 193 GD10035-PA 1..97 1..97 496 96.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22148-PA 199 GJ22148-PA 6..103 4..97 353 69.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15829-PA 198 GK15829-PA 5..102 7..97 339 68.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE21886-PA 193 GE21886-PA 1..97 1..97 478 93.8 Plus

RE50359.hyp Sequence

Translation from 346 to 705

> RE50359.hyp
MAHTGGNLSGNMQPPPPSGGRFSVDMQSLPSLSNLPSPLQIFQMVRNSLR
PWVVFFNINNFKTAISMQRLNSRVIRNLSYFQANYVFIFFVLMIYCLYNL
KHHGSLHSAGHPGFRFWLP*

RE50359.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:19:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG1418-PA 193 CG1418-PA 1..97 1..97 508 100 Plus