BDGP Sequence Production Resources |
Search the DGRC for RE50359
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 503 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1418-RB |
Protein status: | RE50359.pep: wuzgold |
Sequenced Size: | 1150 |
Gene | Date | Evidence |
---|---|---|
CG1418 | 2004-03-31 | Blastp of sequenced clone |
CG1418 | 2008-04-29 | Release 5.5 accounting |
CG1418 | 2008-08-15 | Release 5.9 accounting |
CG1418 | 2008-12-18 | 5.12 accounting |
1150 bp (1150 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012668
> RE50359.complete GTGCGTCACGGCAACGGCAATCCTAGAACTATCTGCCACATCAGATTTTT CAAACTTTGTATACTGTTTCTCAAAAGAAAACGATGTCATAGCAAATTAA GAGTGAATCGTAAAATCAACATCGAAAGTGTTGCCGCCTCCATGTAGAAG TGACCCCGCTAAAGTCCTCGCCGCTTTACAAACGCCGCAGCATCCTCAAG ACAGTTCTTGGACCAAGTGGAACGAATCCAAAGATACACATAACACTTGT GGAACGCCCACACTTGTCGAAAGAAGAATTGTAGATTGCAGCGAAGACGT GTATCTAAGATAAGTGTTAGGACGAGGTTGGGAAAGCACAAGCAAAATGG CACACACTGGCGGGAACCTATCCGGTAACATGCAGCCGCCACCGCCTTCC GGAGGCAGGTTCTCCGTGGACATGCAAAGCCTGCCCTCGCTATCCAACCT GCCATCACCGCTGCAGATCTTCCAAATGGTCCGAAACTCCCTGCGGCCCT GGGTAGTCTTCTTCAACATCAACAATTTCAAAACGGCCATCAGCATGCAG CGGCTAAATAGCCGGGTTATTCGGAATCTCTCCTATTTTCAGGCCAACTA CGTTTTCATCTTTTTTGTACTGATGATATACTGCCTTTATAATCTTAAGC ATCACGGCTCCCTGCATTCTGCTGGTCATCCTGGCTTCCGCTTTTGGCTG CCATAAGCTGCGCGTGCGCAACAGTAACATTACCATCGTGGGACAACAAT TGACGCCCAGCCAGCAGATCATCGCACTCAATCTGGCGACGGCACCAGTG CTATTCCTGGTGGGCGCGGGTGCGGTTTTGTTTTGGACGCTGGGTGCTTC ATGCTTCGTGATTGCTATGCATGCTATATTCTACAACATCGATGCTATTG TAACGGAGGAGAATGAGGGTTTCCTCGCCCAGGTTGTCTGACCGCCAGCC AGAAGCTAAACCCTAGGTCTTCTGGGATCGTGGCAACCAGGGACGAGGAA AGGGGCTAAACATATTCGCCACTATGGGGCCTTGCAAGTCGACACAATAT GTTGTACACCTATTTATAACGAAATCTAGTTAAGCCGCAGACTTTAAATA ATCGAAATACACACTATGACAGATTCATACGACTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 5851336..5851833 | 1134..637 | 2475 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5852133..5852558 | 429..4 | 2115 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 5851874..5852082 | 636..428 | 1030 | 99.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 9963836..9964334 | 1135..637 | 2480 | 99.8 | Minus |
2R | 25286936 | 2R | 9964634..9965059 | 429..4 | 2130 | 100 | Minus |
2R | 25286936 | 2R | 9964375..9964583 | 636..428 | 1045 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 9965035..9965533 | 1135..637 | 2480 | 99.7 | Minus |
2R | 25260384 | 2R | 9965833..9966258 | 429..4 | 2130 | 100 | Minus |
2R | 25260384 | 2R | 9965574..9965782 | 636..428 | 1045 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5852133..5852561 | 1..429 | 99 | Minus | |
chr2R | 5851336..5851833 | 637..1134 | 99 | <- | Minus |
chr2R | 5851874..5852080 | 430..636 | 99 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..582 | 347..941 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..582 | 347..941 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..582 | 347..941 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..582 | 347..941 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..582 | 347..941 | 97 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..1114 | 3..1127 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..1121 | 3..1134 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RB | 6..1139 | 1..1134 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 1..1114 | 3..1127 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1418-RA | 6..1126 | 1..1134 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9963837..9964334 | 637..1134 | 99 | <- | Minus |
2R | 9964375..9964581 | 430..636 | 100 | <- | Minus |
2R | 9964634..9965062 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9963837..9964334 | 637..1134 | 99 | <- | Minus |
2R | 9964375..9964581 | 430..636 | 100 | <- | Minus |
2R | 9964634..9965062 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9963837..9964334 | 637..1134 | 99 | <- | Minus |
2R | 9964375..9964581 | 430..636 | 100 | <- | Minus |
2R | 9964634..9965062 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5851342..5851839 | 637..1134 | 99 | <- | Minus |
arm_2R | 5851880..5852086 | 430..636 | 100 | <- | Minus |
arm_2R | 5852139..5852567 | 1..429 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9965036..9965533 | 637..1134 | 99 | <- | Minus |
2R | 9965574..9965780 | 430..636 | 100 | <- | Minus |
2R | 9965833..9966261 | 1..429 | 99 | Minus |
Translation from 346 to 705
> RE50359.pep MAHTGGNLSGNMQPPPPSGGRFSVDMQSLPSLSNLPSPLQIFQMVRNSLR PWVVFFNINNFKTAISMQRLNSRVIRNLSYFQANYVFIFFVLMIYCLYNL KHHGSLHSAGHPGFRFWLP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11298-PA | 194 | GF11298-PA | 1..98 | 1..97 | 415 | 81.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25243-PA | 193 | GG25243-PA | 1..97 | 1..97 | 463 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20444-PA | 194 | GH20444-PA | 1..98 | 1..97 | 320 | 63.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1418-PA | 193 | CG1418-PA | 1..97 | 1..97 | 508 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19271-PA | 193 | GI19271-PA | 1..100 | 1..97 | 334 | 62 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17704-PA | 193 | GL17704-PA | 1..97 | 1..97 | 343 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12807-PA | 193 | GA12807-PA | 1..97 | 1..97 | 343 | 62.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20563-PA | 193 | GM20563-PA | 1..97 | 1..97 | 496 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10035-PA | 193 | GD10035-PA | 1..97 | 1..97 | 496 | 96.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22148-PA | 199 | GJ22148-PA | 6..103 | 4..97 | 353 | 69.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15829-PA | 198 | GK15829-PA | 5..102 | 7..97 | 339 | 68.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE21886-PA | 193 | GE21886-PA | 1..97 | 1..97 | 478 | 93.8 | Plus |
Translation from 346 to 705
> RE50359.hyp MAHTGGNLSGNMQPPPPSGGRFSVDMQSLPSLSNLPSPLQIFQMVRNSLR PWVVFFNINNFKTAISMQRLNSRVIRNLSYFQANYVFIFFVLMIYCLYNL KHHGSLHSAGHPGFRFWLP*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1418-PA | 193 | CG1418-PA | 1..97 | 1..97 | 508 | 100 | Plus |