Clone RE50559 Report

Search the DGRC for RE50559

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:505
Well:59
Vector:pFlc-1
Associated Gene/TranscriptCG3634-RA
Protein status:RE50559.pep: gold
Preliminary Size:1860
Sequenced Size:2327

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG3634 2001-12-14 Blastp of sequenced clone
CG3634 2002-01-01 Sim4 clustering to Release 2
CG3634 2003-01-01 Sim4 clustering to Release 3
CG3634 2008-04-29 Release 5.5 accounting
CG3634 2008-08-15 Release 5.9 accounting
CG3634 2008-12-18 5.12 accounting

Clone Sequence Records

RE50559.complete Sequence

2327 bp (2327 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071424

> RE50559.complete
GGTATTTACCCCCCGCTCATCCCCTTTCGAATACTTGATTGAAAAAAGTC
TCATCAGCAGCAAGGATACGCGCAAGGATAGCGCCAAGAAAGGCAACCGT
TAATTGATCTAACCCCTCGGCGGTGGTCAGTGCCAGAGCACAGAGTATCC
GCGAACCCCCAGGCACAAGCTAATCCCGGAGAGCGGCAAAATCCGGACGG
AGCTGGGGCCAAAGCGAAACGAGCGTCGAATACAGAACTTCGCAGGCAGG
GGGCAGCAGGCAGCAGGATGTGGGATTCGTCCATGTTTCTCAGCACTCTG
ACGCCTAAGTTCTACGTGGCGCTCACAGGGACCTCCAGCCTGATCTCGGG
CCTGATCCTGATCTTTGAGTGGTGGTATTTCCGGAAGTATGGCACTTCGT
TTATAGAGCAAGTCTCTATCAACCACATTAGCCCCTGGATAAATGGCAGC
GATGGCCAATCAGAGTCCAGCAATGGCAGTGGCAGCAGCAGCAGCAGTGG
CTCCAGCAGCAGCAGCAATGGCGGAGCAGGCGGAGGAGGATCGGGTGGAG
CAGGGGCATCAGGCAGTGGCAGCGCCACCACAAGTACGGGCACCCAAATG
CCCGAGTGTAAGGTCTGGCGAAATCCACTTAATCTATTTCGCGGCGCCGA
GTACCAGAGATTCTTTTGGGCCACCAGCAAGGAGCCGTTGACCTACTACG
ACATGAACTTAAGTGCCCAGGACCATCAAACATTTTTTACCTGCGAAGGC
GATGCCCGCAAGGAGGAGTATGAGATCATGCAGACGGCCTGGCGCGAACG
CAATCCCATGCAGCGCATCAAGTCCGCTCACAGTGCTCTGGAAATCAATG
CGGAATGTGCACCTGCCTATATACTGCTGGCCGAGGAGGAAGCCATGACC
ATTATGGAGGCGGAGAAGATCCTGAAGACGGCCCTAAAGGTCGCCGAGAT
CAACTACCGCAAGTCGCAGGCCACCCAACACCAGGGCGCCATTGCGGATG
GCATGCATCGGCGCGACACCAATGTGCTGATCTATATCAAGCGACGGCTT
GCCATGTGCGCCCGCAAGCTGGGCAAGCTGAAGGAGGCGGCTAAAATGTT
TCGCGATCTCACCAAGGAGATACCCTCGATCATGAGCGTACTGAACATTC
ACGAGAATCTAATCGAAACGCTGCTGGAGATGCAGGCCTACGCCGATTGC
CATGCCATTCTGGCCAAGTACGATGACATCTCGCTGCCGAAATCGGCGAC
TATCTGCTATACAGCTGCTCTGCTGAAGGCGCGCGCCGTAGCCGACAAGT
TTTCGCCAGACATAGCATCCAAGCGAGGTCTAAGTCAAGCTGAAATGAGC
GCCGTTGAGGCCATTCATCGGGCGGTGGAGTTCAATCCGCATGTGCCCAA
GTATCTGCTTGAGACAAAGCGACTTATTCTACCGCCAGAGCACATTTTGA
AGCGCGGCGATTCGGAGGCGTTGGCCTACGCGTTCTTCCATCTGAAGCAC
TGGAAGCAGGTGGAGGGCGCCCTGAACCTGCTGCACTGCACCTGGGAGGG
CACGTTTCGCATGCTGCCGTATCCGCTGGAGCGTGGCCACCTCTTCTATC
CATATCCAACATGCACAGAGTGCGCGGATCGCGAACTGCTGCCGGCGTTC
CACGAGGTGTCTGTTTATCCTAAGAAGGAGCTGCCCTTCTTCATCCTGTT
CACGGCGGGACTGTGCTCCATTACCGCCCTGCTGGCCTTGGCCACCCACC
AGTATCCGGAGCCCATGGGTCATTTGGCACAGACCGTACTTACCTGGATA
TCGTATCCATTTCAGCTGCTCAAGGAGCGTATCGAGGCGTTCTGGCCGTG
CAATCTGCTGCAGCAGTTGTCTCGCGTCTAAGCCGGAGGTCACACACTCC
TCCACTTTCCACCCTCGAATGACGTCACACACACTCACACAAAACTAAGA
ACACCACACATACTCACACGCATCCATCTCCATGTGGCTGAGAAGCAAGC
GGGCAGAAGGCCACGGAACCACTCAAAACACAAACCTTAAACACAAAACA
TACATATATATATATATATATATATATATATAACGTATATATATTTTGGA
TCTTAATATGTCTGTGTTGTCTTCGTGAAATAAACATAAAGAAAGCAAAT
GCAAGCAAACACGCACTCAACTAGTTCCAGCTTCCAAGTGATCCGGATGA
ACGAAACGAATTTTCAGCAGCCACGCAAGAGGAAACTAAATTACTTTTAA
GTTTTATTATTATTTTAATTATTGTAAACGAGTACGAGAAGCGAGTAAAC
TTAAATTCAAACAAAAAAAAAAAAAAA

RE50559.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:46:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3634-RA 2388 CG3634-RA 77..2388 1..2312 11560 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:11:24
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 20795889..20797796 2312..405 9540 100 Minus
chr3L 24539361 chr3L 20797860..20798265 406..1 2030 100 Minus
chrX 22417052 chrX 10814299..10814342 2039..2082 190 95.5 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:39 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20806864..20808775 2316..405 9560 100 Minus
3L 28110227 3L 20808839..20809244 406..1 2030 100 Minus
X 23542271 X 10922997..10923040 2039..2082 190 95.5 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:12:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 20799964..20801875 2316..405 9560 100 Minus
3L 28103327 3L 20801939..20802344 406..1 2030 100 Minus
X 23527363 X 10931095..10931138 2039..2082 190 95.4 Plus
Blast to na_te.dros performed 2019-03-16 23:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
gypsy11 4428 gypsy11 GYPSY11 4428bp 1604..1652 2282..2233 121 74 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 2517..2623 1986..2092 119 61.5 Plus

RE50559.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:12:04 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 20795889..20797682 519..2312 95 == Minus
chr3L 20797734..20797794 407..467 100 <- Minus
chr3L 20797860..20798265 1..406 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:20:57 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..1614 268..1881 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:13:41 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..1614 268..1881 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:19:31 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..1614 268..1881 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:38:19 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..1614 268..1881 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:08 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..1614 268..1881 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:45:00 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..2312 1..2312 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:13:41 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..2312 1..2312 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:19:31 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 4..2315 1..2312 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:38:20 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 1..2312 1..2312 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:08 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
CG3634-RA 4..2315 1..2312 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:04 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20806868..20808773 407..2312 100 <- Minus
3L 20808839..20809244 1..406 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:04 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20806868..20808773 407..2312 100 <- Minus
3L 20808839..20809244 1..406 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:04 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20806868..20808773 407..2312 100 <- Minus
3L 20808839..20809244 1..406 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:19:31 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20799968..20801873 407..2312 100 <- Minus
arm_3L 20801939..20802344 1..406 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:15:32 Download gff for RE50559.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20799968..20801873 407..2312 100 <- Minus
3L 20801939..20802344 1..406 100   Minus

RE50559.hyp Sequence

Translation from 267 to 1880

> RE50559.hyp
MWDSSMFLSTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVS
INHISPWINGSDGQSESSNGSGSSSSSGSSSSSNGGAGGGGSGGAGASGS
GSATTSTGTQMPECKVWRNPLNLFRGAEYQRFFWATSKEPLTYYDMNLSA
QDHQTFFTCEGDARKEEYEIMQTAWRERNPMQRIKSAHSALEINAECAPA
YILLAEEEAMTIMEAEKILKTALKVAEINYRKSQATQHQGAIADGMHRRD
TNVLIYIKRRLAMCARKLGKLKEAAKMFRDLTKEIPSIMSVLNIHENLIE
TLLEMQAYADCHAILAKYDDISLPKSATICYTAALLKARAVADKFSPDIA
SKRGLSQAEMSAVEAIHRAVEFNPHVPKYLLETKRLILPPEHILKRGDSE
ALAYAFFHLKHWKQVEGALNLLHCTWEGTFRMLPYPLERGHLFYPYPTCT
ECADRELLPAFHEVSVYPKKELPFFILFTAGLCSITALLALATHQYPEPM
GHLAQTVLTWISYPFQLLKERIEAFWPCNLLQQLSRV*

RE50559.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:03:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3634-PC 537 CG3634-PC 1..537 1..537 2819 100 Plus
CG3634-PB 537 CG3634-PB 1..537 1..537 2819 100 Plus
CG3634-PA 537 CG3634-PA 1..537 1..537 2819 100 Plus

RE50559.pep Sequence

Translation from 267 to 1880

> RE50559.pep
MWDSSMFLSTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVS
INHISPWINGSDGQSESSNGSGSSSSSGSSSSSNGGAGGGGSGGAGASGS
GSATTSTGTQMPECKVWRNPLNLFRGAEYQRFFWATSKEPLTYYDMNLSA
QDHQTFFTCEGDARKEEYEIMQTAWRERNPMQRIKSAHSALEINAECAPA
YILLAEEEAMTIMEAEKILKTALKVAEINYRKSQATQHQGAIADGMHRRD
TNVLIYIKRRLAMCARKLGKLKEAAKMFRDLTKEIPSIMSVLNIHENLIE
TLLEMQAYADCHAILAKYDDISLPKSATICYTAALLKARAVADKFSPDIA
SKRGLSQAEMSAVEAIHRAVEFNPHVPKYLLETKRLILPPEHILKRGDSE
ALAYAFFHLKHWKQVEGALNLLHCTWEGTFRMLPYPLERGHLFYPYPTCT
ECADRELLPAFHEVSVYPKKELPFFILFTAGLCSITALLALATHQYPEPM
GHLAQTVLTWISYPFQLLKERIEAFWPCNLLQQLSRV*

RE50559.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10204-PA 532 GF10204-PA 1..532 1..537 2806 97.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13281-PA 537 GG13281-PA 1..537 1..537 2882 99.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:21:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH15569-PA 536 GH15569-PA 1..536 1..537 2553 92.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3634-PC 537 CG3634-PC 1..537 1..537 2819 100 Plus
CG3634-PB 537 CG3634-PB 1..537 1..537 2819 100 Plus
CG3634-PA 537 CG3634-PA 1..537 1..537 2819 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16844-PA 530 GI16844-PA 1..530 1..537 2532 91.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:22:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26334-PA 541 GL26334-PA 1..541 1..537 2569 94.1 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17575-PA 541 GA17575-PA 1..541 1..537 2581 94.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22184-PA 537 GM22184-PA 1..537 1..537 2889 99.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12159-PA 54 GD12159-PA 1..54 1..54 285 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12594-PA 532 GJ12594-PA 1..532 1..537 2577 93.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:22:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13550-PA 539 GK13550-PA 1..539 1..537 2785 96.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:22:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22377-PA 537 GE22377-PA 1..537 1..537 2889 99.8 Plus
Dyak\GE22378-PA 537 GE22378-PA 1..537 1..537 2883 99.6 Plus