BDGP Sequence Production Resources |
Search the DGRC for RE50559
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 505 |
Well: | 59 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG3634-RA |
Protein status: | RE50559.pep: gold |
Preliminary Size: | 1860 |
Sequenced Size: | 2327 |
Gene | Date | Evidence |
---|---|---|
CG3634 | 2001-12-14 | Blastp of sequenced clone |
CG3634 | 2002-01-01 | Sim4 clustering to Release 2 |
CG3634 | 2003-01-01 | Sim4 clustering to Release 3 |
CG3634 | 2008-04-29 | Release 5.5 accounting |
CG3634 | 2008-08-15 | Release 5.9 accounting |
CG3634 | 2008-12-18 | 5.12 accounting |
2327 bp (2327 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071424
> RE50559.complete GGTATTTACCCCCCGCTCATCCCCTTTCGAATACTTGATTGAAAAAAGTC TCATCAGCAGCAAGGATACGCGCAAGGATAGCGCCAAGAAAGGCAACCGT TAATTGATCTAACCCCTCGGCGGTGGTCAGTGCCAGAGCACAGAGTATCC GCGAACCCCCAGGCACAAGCTAATCCCGGAGAGCGGCAAAATCCGGACGG AGCTGGGGCCAAAGCGAAACGAGCGTCGAATACAGAACTTCGCAGGCAGG GGGCAGCAGGCAGCAGGATGTGGGATTCGTCCATGTTTCTCAGCACTCTG ACGCCTAAGTTCTACGTGGCGCTCACAGGGACCTCCAGCCTGATCTCGGG CCTGATCCTGATCTTTGAGTGGTGGTATTTCCGGAAGTATGGCACTTCGT TTATAGAGCAAGTCTCTATCAACCACATTAGCCCCTGGATAAATGGCAGC GATGGCCAATCAGAGTCCAGCAATGGCAGTGGCAGCAGCAGCAGCAGTGG CTCCAGCAGCAGCAGCAATGGCGGAGCAGGCGGAGGAGGATCGGGTGGAG CAGGGGCATCAGGCAGTGGCAGCGCCACCACAAGTACGGGCACCCAAATG CCCGAGTGTAAGGTCTGGCGAAATCCACTTAATCTATTTCGCGGCGCCGA GTACCAGAGATTCTTTTGGGCCACCAGCAAGGAGCCGTTGACCTACTACG ACATGAACTTAAGTGCCCAGGACCATCAAACATTTTTTACCTGCGAAGGC GATGCCCGCAAGGAGGAGTATGAGATCATGCAGACGGCCTGGCGCGAACG CAATCCCATGCAGCGCATCAAGTCCGCTCACAGTGCTCTGGAAATCAATG CGGAATGTGCACCTGCCTATATACTGCTGGCCGAGGAGGAAGCCATGACC ATTATGGAGGCGGAGAAGATCCTGAAGACGGCCCTAAAGGTCGCCGAGAT CAACTACCGCAAGTCGCAGGCCACCCAACACCAGGGCGCCATTGCGGATG GCATGCATCGGCGCGACACCAATGTGCTGATCTATATCAAGCGACGGCTT GCCATGTGCGCCCGCAAGCTGGGCAAGCTGAAGGAGGCGGCTAAAATGTT TCGCGATCTCACCAAGGAGATACCCTCGATCATGAGCGTACTGAACATTC ACGAGAATCTAATCGAAACGCTGCTGGAGATGCAGGCCTACGCCGATTGC CATGCCATTCTGGCCAAGTACGATGACATCTCGCTGCCGAAATCGGCGAC TATCTGCTATACAGCTGCTCTGCTGAAGGCGCGCGCCGTAGCCGACAAGT TTTCGCCAGACATAGCATCCAAGCGAGGTCTAAGTCAAGCTGAAATGAGC GCCGTTGAGGCCATTCATCGGGCGGTGGAGTTCAATCCGCATGTGCCCAA GTATCTGCTTGAGACAAAGCGACTTATTCTACCGCCAGAGCACATTTTGA AGCGCGGCGATTCGGAGGCGTTGGCCTACGCGTTCTTCCATCTGAAGCAC TGGAAGCAGGTGGAGGGCGCCCTGAACCTGCTGCACTGCACCTGGGAGGG CACGTTTCGCATGCTGCCGTATCCGCTGGAGCGTGGCCACCTCTTCTATC CATATCCAACATGCACAGAGTGCGCGGATCGCGAACTGCTGCCGGCGTTC CACGAGGTGTCTGTTTATCCTAAGAAGGAGCTGCCCTTCTTCATCCTGTT CACGGCGGGACTGTGCTCCATTACCGCCCTGCTGGCCTTGGCCACCCACC AGTATCCGGAGCCCATGGGTCATTTGGCACAGACCGTACTTACCTGGATA TCGTATCCATTTCAGCTGCTCAAGGAGCGTATCGAGGCGTTCTGGCCGTG CAATCTGCTGCAGCAGTTGTCTCGCGTCTAAGCCGGAGGTCACACACTCC TCCACTTTCCACCCTCGAATGACGTCACACACACTCACACAAAACTAAGA ACACCACACATACTCACACGCATCCATCTCCATGTGGCTGAGAAGCAAGC GGGCAGAAGGCCACGGAACCACTCAAAACACAAACCTTAAACACAAAACA TACATATATATATATATATATATATATATATAACGTATATATATTTTGGA TCTTAATATGTCTGTGTTGTCTTCGTGAAATAAACATAAAGAAAGCAAAT GCAAGCAAACACGCACTCAACTAGTTCCAGCTTCCAAGTGATCCGGATGA ACGAAACGAATTTTCAGCAGCCACGCAAGAGGAAACTAAATTACTTTTAA GTTTTATTATTATTTTAATTATTGTAAACGAGTACGAGAAGCGAGTAAAC TTAAATTCAAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3634-RA | 2388 | CG3634-RA | 77..2388 | 1..2312 | 11560 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 20795889..20797796 | 2312..405 | 9540 | 100 | Minus |
chr3L | 24539361 | chr3L | 20797860..20798265 | 406..1 | 2030 | 100 | Minus |
chrX | 22417052 | chrX | 10814299..10814342 | 2039..2082 | 190 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 20806864..20808775 | 2316..405 | 9560 | 100 | Minus |
3L | 28110227 | 3L | 20808839..20809244 | 406..1 | 2030 | 100 | Minus |
X | 23542271 | X | 10922997..10923040 | 2039..2082 | 190 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 20799964..20801875 | 2316..405 | 9560 | 100 | Minus |
3L | 28103327 | 3L | 20801939..20802344 | 406..1 | 2030 | 100 | Minus |
X | 23527363 | X | 10931095..10931138 | 2039..2082 | 190 | 95.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20795889..20797682 | 519..2312 | 95 | == | Minus |
chr3L | 20797734..20797794 | 407..467 | 100 | <- | Minus |
chr3L | 20797860..20798265 | 1..406 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..1614 | 268..1881 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..1614 | 268..1881 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..1614 | 268..1881 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..1614 | 268..1881 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..1614 | 268..1881 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..2312 | 1..2312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..2312 | 1..2312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 4..2315 | 1..2312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 1..2312 | 1..2312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG3634-RA | 4..2315 | 1..2312 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20806868..20808773 | 407..2312 | 100 | <- | Minus |
3L | 20808839..20809244 | 1..406 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20806868..20808773 | 407..2312 | 100 | <- | Minus |
3L | 20808839..20809244 | 1..406 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20806868..20808773 | 407..2312 | 100 | <- | Minus |
3L | 20808839..20809244 | 1..406 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20799968..20801873 | 407..2312 | 100 | <- | Minus |
arm_3L | 20801939..20802344 | 1..406 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20799968..20801873 | 407..2312 | 100 | <- | Minus |
3L | 20801939..20802344 | 1..406 | 100 | Minus |
Translation from 267 to 1880
> RE50559.hyp MWDSSMFLSTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVS INHISPWINGSDGQSESSNGSGSSSSSGSSSSSNGGAGGGGSGGAGASGS GSATTSTGTQMPECKVWRNPLNLFRGAEYQRFFWATSKEPLTYYDMNLSA QDHQTFFTCEGDARKEEYEIMQTAWRERNPMQRIKSAHSALEINAECAPA YILLAEEEAMTIMEAEKILKTALKVAEINYRKSQATQHQGAIADGMHRRD TNVLIYIKRRLAMCARKLGKLKEAAKMFRDLTKEIPSIMSVLNIHENLIE TLLEMQAYADCHAILAKYDDISLPKSATICYTAALLKARAVADKFSPDIA SKRGLSQAEMSAVEAIHRAVEFNPHVPKYLLETKRLILPPEHILKRGDSE ALAYAFFHLKHWKQVEGALNLLHCTWEGTFRMLPYPLERGHLFYPYPTCT ECADRELLPAFHEVSVYPKKELPFFILFTAGLCSITALLALATHQYPEPM GHLAQTVLTWISYPFQLLKERIEAFWPCNLLQQLSRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3634-PC | 537 | CG3634-PC | 1..537 | 1..537 | 2819 | 100 | Plus |
CG3634-PB | 537 | CG3634-PB | 1..537 | 1..537 | 2819 | 100 | Plus |
CG3634-PA | 537 | CG3634-PA | 1..537 | 1..537 | 2819 | 100 | Plus |
Translation from 267 to 1880
> RE50559.pep MWDSSMFLSTLTPKFYVALTGTSSLISGLILIFEWWYFRKYGTSFIEQVS INHISPWINGSDGQSESSNGSGSSSSSGSSSSSNGGAGGGGSGGAGASGS GSATTSTGTQMPECKVWRNPLNLFRGAEYQRFFWATSKEPLTYYDMNLSA QDHQTFFTCEGDARKEEYEIMQTAWRERNPMQRIKSAHSALEINAECAPA YILLAEEEAMTIMEAEKILKTALKVAEINYRKSQATQHQGAIADGMHRRD TNVLIYIKRRLAMCARKLGKLKEAAKMFRDLTKEIPSIMSVLNIHENLIE TLLEMQAYADCHAILAKYDDISLPKSATICYTAALLKARAVADKFSPDIA SKRGLSQAEMSAVEAIHRAVEFNPHVPKYLLETKRLILPPEHILKRGDSE ALAYAFFHLKHWKQVEGALNLLHCTWEGTFRMLPYPLERGHLFYPYPTCT ECADRELLPAFHEVSVYPKKELPFFILFTAGLCSITALLALATHQYPEPM GHLAQTVLTWISYPFQLLKERIEAFWPCNLLQQLSRV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10204-PA | 532 | GF10204-PA | 1..532 | 1..537 | 2806 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13281-PA | 537 | GG13281-PA | 1..537 | 1..537 | 2882 | 99.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15569-PA | 536 | GH15569-PA | 1..536 | 1..537 | 2553 | 92.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG3634-PC | 537 | CG3634-PC | 1..537 | 1..537 | 2819 | 100 | Plus |
CG3634-PB | 537 | CG3634-PB | 1..537 | 1..537 | 2819 | 100 | Plus |
CG3634-PA | 537 | CG3634-PA | 1..537 | 1..537 | 2819 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI16844-PA | 530 | GI16844-PA | 1..530 | 1..537 | 2532 | 91.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26334-PA | 541 | GL26334-PA | 1..541 | 1..537 | 2569 | 94.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17575-PA | 541 | GA17575-PA | 1..541 | 1..537 | 2581 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22184-PA | 537 | GM22184-PA | 1..537 | 1..537 | 2889 | 99.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12159-PA | 54 | GD12159-PA | 1..54 | 1..54 | 285 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12594-PA | 532 | GJ12594-PA | 1..532 | 1..537 | 2577 | 93.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13550-PA | 539 | GK13550-PA | 1..539 | 1..537 | 2785 | 96.3 | Plus |