BDGP Sequence Production Resources |
Search the DGRC for RE50843
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 508 |
Well: | 43 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG2852-RA |
Protein status: | RE50843.pep: gold |
Preliminary Size: | 1344 |
Sequenced Size: | 898 |
Gene | Date | Evidence |
---|---|---|
CG2852 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2852 | 2004-08-13 | Blastp of sequenced clone |
CG2852 | 2008-04-29 | Release 5.5 accounting |
CG2852 | 2008-08-15 | Release 5.9 accounting |
CG2852 | 2008-12-18 | 5.12 accounting |
898 bp (898 high quality bases) assembled on 2006-06-05
GenBank Submission: BT021266
> RE50843.complete GAAAATTCAGTCGTGAAATATCCATTGGCGACGTCGCTTGAGGAATAAAC TGAAGCGCTGTGAATATTTAGAACGATGAAGCTGTTCTTATCCGTTTTCG TGGTAGCCCTGGTGGCCGGCGTCGTTGTTGCCGACGATAGCAAGGGTCCC AAAGTGACCGAGAAGGTTTTCTTTGACATCACCATTGGCGGCGAGCCCGC TGGTCGCATCGAGATCGGTCTGTTCGGCAAGACGGTGCCCAAGACGGTGG AGAACTTCAAGGAGCTGGCGCTGAAGCCGCAGGGCGAGGGCTACAAGGGC AGCAAGTTCCACCGCATCATCAAGGACTTCATGATCCAGGGCGGTGACTT CACCAAGGGCGACGGCACCGGCGGTCGCTCCATCTACGGCGAGCGCTTCG AGGATGAGAACTTCAAGCTGAAGCACTATGGCGCCGGCTGGCTGAGCATG GCCAACGCTGGCAAGGACACCAACGGATCGCAGTTCTTCATCACCACCAA GCAGACCAGCTGGCTGGATGGACGCCACGTCGTCTTCGGCAAGATCCTGT CGGGCATGAATGTGGTGCGCCAGATCGAGAACTCGGCCACTGATGCCCGC GACCGTCCCGTCAAGGATGTGGTCATCGCCAACAGCGGCACCCTGCCCGT TTCGGAGGCCTTCTCCGTGGCCAAGGCCGATGCCACCGACTAAAGTGTTT GGGGAGCATGTCATCCATCAGCAACATAACCGATTTGAACTAAGCATAAA CGCATAATCGATTTTTCCAGACATTTGCATTTACCATAGCTCGCCATGTT TATTTACATTTCGTTCCGTAAGCAAGTAATTGTGCTCAACTAAAAACAGA AATGGCATAAATAAAGAATGATTTTTTGTGTGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2852-RA | 1126 | CG2852-RA | 119..1005 | 1..887 | 4420 | 99.8 | Plus |
CG2852.a | 941 | CG2852.a | 218..939 | 166..887 | 3595 | 99.8 | Plus |
nc_8670.a | 622 | nc_8670.a | 140..622 | 290..772 | 2415 | 100 | Plus |
CG2852.a | 941 | CG2852.a | 8..174 | 1..167 | 835 | 100 | Plus |
nc_8670.a | 622 | nc_8670.a | 1..140 | 26..165 | 700 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 18531471..18532063 | 882..290 | 2950 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 18532725..18532891 | 167..1 | 820 | 99.4 | Minus |
chr2R | 21145070 | chr2R | 18532462..18532588 | 290..164 | 620 | 99.2 | Minus |
chrX | 22417052 | chrX | 16208057..16208253 | 488..292 | 280 | 76.1 | Minus |
chr2R | 21145070 | chr2R | 2562423..2562629 | 495..289 | 225 | 73.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 22644938..22645535 | 887..290 | 2975 | 99.8 | Minus |
2R | 25286936 | 2R | 22646180..22646346 | 167..1 | 835 | 100 | Minus |
2R | 25286936 | 2R | 22645921..22646047 | 290..164 | 635 | 100 | Minus |
X | 23542271 | X | 16318339..16318535 | 488..292 | 280 | 76.1 | Minus |
2R | 25286936 | 2R | 6675226..6675432 | 495..289 | 225 | 73.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 22646137..22646734 | 887..290 | 2975 | 99.8 | Minus |
2R | 25260384 | 2R | 22647379..22647545 | 167..1 | 835 | 100 | Minus |
2R | 25260384 | 2R | 22647120..22647246 | 290..164 | 635 | 100 | Minus |
2R | 25260384 | 2R | 6676547..6676631 | 373..289 | 200 | 82.3 | Minus |
X | 23527363 | X | 16326535..16326633 | 390..292 | 180 | 78.7 | Minus |
3L | 28103327 | 3L | 542540..542578 | 344..306 | 165 | 94.8 | Minus |
X | 23527363 | X | 16326437..16326522 | 488..403 | 160 | 79 | Minus |
3L | 28103327 | 3L | 542390..542436 | 494..448 | 145 | 87.2 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 18531471..18532062 | 291..882 | 99 | <- | Minus |
chr2R | 18532462..18532586 | 166..290 | 99 | <- | Minus |
chr2R | 18532727..18532891 | 1..165 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..618 | 76..693 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..618 | 76..693 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..618 | 76..693 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..618 | 76..693 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..618 | 76..693 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..882 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..882 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..880 | 3..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..882 | 1..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG2852-RA | 1..880 | 3..882 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22644943..22645534 | 291..882 | 100 | <- | Minus |
2R | 22645921..22646045 | 166..290 | 100 | <- | Minus |
2R | 22646182..22646346 | 1..165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22644943..22645534 | 291..882 | 100 | <- | Minus |
2R | 22645921..22646045 | 166..290 | 100 | <- | Minus |
2R | 22646182..22646346 | 1..165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22644943..22645534 | 291..882 | 100 | <- | Minus |
2R | 22645921..22646045 | 166..290 | 100 | <- | Minus |
2R | 22646182..22646346 | 1..165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 18532448..18533039 | 291..882 | 100 | <- | Minus |
arm_2R | 18533426..18533550 | 166..290 | 100 | <- | Minus |
arm_2R | 18533687..18533851 | 1..165 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 22646142..22646733 | 291..882 | 100 | <- | Minus |
2R | 22647120..22647244 | 166..290 | 100 | <- | Minus |
2R | 22647381..22647545 | 1..165 | 100 | Minus |
Translation from 75 to 692
> RE50843.hyp MKLFLSVFVVALVAGVVVADDSKGPKVTEKVFFDITIGGEPAGRIEIGLF GKTVPKTVENFKELALKPQGEGYKGSKFHRIIKDFMIQGGDFTKGDGTGG RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTKQTSWLDGR HVVFGKILSGMNVVRQIENSATDARDRPVKDVVIANSGTLPVSEAFSVAK ADATD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2852-PD | 205 | CG2852-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
CG2852-PA | 205 | CG2852-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
Cyp1-PA | 227 | CG9916-PA | 53..227 | 17..190 | 490 | 54 | Plus |
CG7768-PB | 164 | CG7768-PB | 5..164 | 30..190 | 480 | 57.1 | Plus |
CG7768-PA | 164 | CG7768-PA | 5..164 | 30..190 | 480 | 57.1 | Plus |
Translation from 75 to 692
> RE50843.pep MKLFLSVFVVALVAGVVVADDSKGPKVTEKVFFDITIGGEPAGRIEIGLF GKTVPKTVENFKELALKPQGEGYKGSKFHRIIKDFMIQGGDFTKGDGTGG RSIYGERFEDENFKLKHYGAGWLSMANAGKDTNGSQFFITTKQTSWLDGR HVVFGKILSGMNVVRQIENSATDARDRPVKDVVIANSGTLPVSEAFSVAK ADATD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13003-PA | 205 | GF13003-PA | 1..205 | 1..205 | 982 | 91.7 | Plus |
Dana\GF11346-PA | 394 | GF11346-PA | 219..393 | 22..190 | 494 | 55.1 | Plus |
Dana\GF19040-PA | 155 | GF19040-PA | 1..155 | 35..190 | 468 | 56.4 | Plus |
Dana\GF13802-PA | 183 | GF13802-PA | 19..183 | 31..190 | 468 | 53.9 | Plus |
Dana\GF15071-PA | 235 | GF15071-PA | 4..200 | 1..202 | 445 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21776-PA | 205 | GG21776-PA | 1..205 | 1..205 | 1035 | 96.1 | Plus |
Dere\GG19332-PA | 227 | GG19332-PA | 53..227 | 17..190 | 502 | 54 | Plus |
Dere\GG21795-PA | 300 | GG21795-PA | 121..299 | 18..190 | 488 | 53.9 | Plus |
Dere\GG10814-PA | 183 | GG10814-PA | 19..183 | 31..190 | 462 | 53.9 | Plus |
Dere\GG24755-PA | 236 | GG24755-PA | 24..194 | 27..194 | 450 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH20332-PA | 205 | GH20332-PA | 1..205 | 1..205 | 938 | 86.8 | Plus |
Dgri\GH14843-PA | 164 | GH14843-PA | 5..164 | 30..190 | 493 | 56.5 | Plus |
Dgri\GH20760-PA | 304 | GH20760-PA | 129..303 | 22..190 | 491 | 55.1 | Plus |
Dgri\GH10794-PA | 165 | GH10794-PA | 6..165 | 30..190 | 487 | 57.1 | Plus |
Dgri\GH17842-PA | 165 | GH17842-PA | 6..165 | 30..190 | 481 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG2852-PD | 205 | CG2852-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
CG2852-PA | 205 | CG2852-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
Cyp1-PA | 227 | CG9916-PA | 53..227 | 17..190 | 490 | 54 | Plus |
cyp33-PA | 300 | CG4886-PA | 121..299 | 18..190 | 481 | 54.4 | Plus |
CG7768-PB | 164 | CG7768-PB | 5..164 | 30..190 | 480 | 57.1 | Plus |
CG7768-PA | 164 | CG7768-PA | 5..164 | 30..190 | 480 | 57.1 | Plus |
CG17266-PB | 183 | CG17266-PB | 19..183 | 31..190 | 454 | 53.9 | Plus |
CG17266-PA | 183 | CG17266-PA | 19..183 | 31..190 | 454 | 53.9 | Plus |
ninaA-PA | 237 | CG3966-PA | 25..195 | 27..194 | 446 | 49.1 | Plus |
Moca-cyp-PA | 970 | CG1866-PA | 14..182 | 30..190 | 442 | 52.7 | Plus |
Cypl-PA | 176 | CG13892-PA | 30..163 | 43..179 | 358 | 55.1 | Plus |
CG8336-PD | 383 | CG8336-PD | 17..197 | 31..204 | 349 | 43.4 | Plus |
CG8336-PC | 383 | CG8336-PC | 17..197 | 31..204 | 349 | 43.4 | Plus |
CG8336-PA | 383 | CG8336-PA | 17..197 | 31..204 | 349 | 43.4 | Plus |
CG8336-PB | 383 | CG8336-PB | 17..197 | 31..204 | 349 | 43.4 | Plus |
CG7747-PA | 517 | CG7747-PA | 258..440 | 10..195 | 329 | 40.1 | Plus |
CG3511-PB | 637 | CG3511-PB | 469..630 | 16..184 | 319 | 46.8 | Plus |
CG3511-PA | 637 | CG3511-PA | 469..630 | 16..184 | 319 | 46.8 | Plus |
CG10907-PA | 502 | CG10907-PA | 9..156 | 25..179 | 275 | 40.1 | Plus |
CG11777-PA | 161 | CG11777-PA | 10..146 | 43..181 | 212 | 38.7 | Plus |
CG5808-PA | 653 | CG5808-PA | 10..162 | 43..190 | 196 | 34.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\moj29-PA | 205 | GI20003-PA | 1..205 | 1..205 | 944 | 86.8 | Plus |
Dmoj\GI13698-PA | 165 | GI13698-PA | 6..165 | 30..190 | 495 | 57.8 | Plus |
Dmoj\GI21755-PA | 165 | GI21755-PA | 6..165 | 30..190 | 484 | 55.9 | Plus |
Dmoj\GI13696-PA | 166 | GI13696-PA | 6..164 | 31..190 | 484 | 57.5 | Plus |
Dmoj\GI13614-PA | 164 | GI13614-PA | 5..164 | 30..190 | 478 | 55.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17482-PA | 205 | GL17482-PA | 1..205 | 1..205 | 1004 | 93.7 | Plus |
Dper\GL11464-PA | 302 | GL11464-PA | 127..301 | 22..190 | 489 | 54.5 | Plus |
Dper\GL23654-PA | 939 | GL23654-PA | 14..182 | 30..190 | 469 | 54.4 | Plus |
Dper\GL10991-PA | 183 | GL10991-PA | 19..183 | 31..190 | 462 | 53.3 | Plus |
Dper\GL16395-PA | 236 | GL16395-PA | 1..194 | 1..194 | 457 | 45.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15486-PA | 205 | GA15486-PA | 1..205 | 1..205 | 1004 | 93.7 | Plus |
Dpse\Cyp1-PA | 226 | GA22120-PA | 53..226 | 18..190 | 491 | 53.7 | Plus |
Dpse\GA18502-PA | 302 | GA18502-PA | 127..301 | 22..190 | 490 | 54.5 | Plus |
Dpse\GA14426-PA | 183 | GA14426-PA | 19..183 | 31..190 | 462 | 53.3 | Plus |
Dpse\GA17809-PA | 236 | GA17809-PA | 24..194 | 27..194 | 457 | 49.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM15627-PA | 205 | GM15627-PA | 1..205 | 1..205 | 1060 | 99.5 | Plus |
Dsec\GM13410-PA | 227 | GM13410-PA | 53..227 | 17..190 | 503 | 54 | Plus |
Dsec\GM21798-PA | 301 | GM21798-PA | 122..300 | 18..190 | 490 | 53.9 | Plus |
Dsec\GM25460-PA | 164 | GM25460-PA | 5..164 | 30..190 | 484 | 57.8 | Plus |
Dsec\GM20863-PA | 183 | GM20863-PA | 19..183 | 31..190 | 463 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD25116-PA | 203 | GD25116-PA | 1..203 | 1..205 | 1038 | 98.5 | Plus |
Dsim\GD11288-PA | 301 | GD11288-PA | 122..300 | 18..190 | 490 | 53.9 | Plus |
Dsim\GD10314-PA | 183 | GD10314-PA | 19..183 | 31..190 | 463 | 53.9 | Plus |
Dsim\GD20227-PA | 155 | GD20227-PA | 1..155 | 35..190 | 438 | 53.2 | Plus |
Dsim\GD21371-PA | 1003 | GD21371-PA | 14..182 | 30..190 | 435 | 52.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21252-PA | 206 | GJ21252-PA | 1..206 | 1..205 | 932 | 86.9 | Plus |
Dvir\GJ19133-PA | 223 | GJ19133-PA | 50..223 | 18..190 | 503 | 54.9 | Plus |
Dvir\GJ14038-PA | 164 | GJ14038-PA | 5..164 | 30..190 | 491 | 55.9 | Plus |
Dvir\GJ13951-PA | 164 | GJ13951-PA | 5..164 | 30..190 | 479 | 55.3 | Plus |
Dvir\GJ14037-PA | 164 | GJ14037-PA | 5..162 | 30..188 | 475 | 56.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21428-PA | 204 | GK21428-PA | 1..204 | 1..205 | 933 | 87.3 | Plus |
Dwil\GK14585-PA | 165 | GK14585-PA | 3..165 | 27..190 | 505 | 57.9 | Plus |
Dwil\GK16511-PA | 165 | GK16511-PA | 6..165 | 30..190 | 495 | 57.1 | Plus |
Dwil\GK23148-PA | 183 | GK23148-PA | 15..183 | 27..190 | 465 | 52.7 | Plus |
Dwil\GK24444-PA | 238 | GK24444-PA | 26..203 | 27..202 | 448 | 48 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11851-PA | 205 | GE11851-PA | 1..205 | 1..205 | 1055 | 98.5 | Plus |
Dyak\Cyp1-PA | 227 | GE15979-PA | 53..227 | 17..190 | 500 | 54 | Plus |
Dyak\GE11871-PA | 300 | GE11871-PA | 121..299 | 18..190 | 488 | 53.9 | Plus |
Dyak\GE22008-PA | 180 | GE22008-PA | 21..180 | 30..190 | 484 | 57.8 | Plus |
Dyak\GE24621-PA | 183 | GE24621-PA | 19..183 | 31..190 | 463 | 53.9 | Plus |