Clone RE51073 Report

Search the DGRC for RE51073

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:510
Well:73
Vector:pFlc-1
Associated Gene/TranscriptCG4133-RA
Protein status:RE51073.pep: gold
Preliminary Size:2240
Sequenced Size:2633

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4133 2002-01-01 Sim4 clustering to Release 2
CG4133 2002-01-03 Blastp of sequenced clone
CG4133 2003-01-01 Sim4 clustering to Release 3
CG4133 2008-04-29 Release 5.5 accounting
CG4133 2008-08-15 Release 5.9 accounting
CG4133 2008-12-18 5.12 accounting

Clone Sequence Records

RE51073.complete Sequence

2633 bp (2633 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075499

> RE51073.complete
AGAGAGCGAAGAAATTTGTACCAGTGCGGACGTGGACAAGCTCGATCCAG
CTTTATTATTTATTTTATCAGAAAGCAGAACCCACAACCGAAAAAACCAG
TCATTGGCAAGGCTAAAAGATATTATTGCCTACCATCCTTTACTTCATAC
CTCGCATTGGAAAGTGAAGTTGAGTTGGAAAAGGAGAACTAGAAAAAGGA
TTTCTAGACCGAAAAAACAAGACACCAACAGCACAACGACCATAAATACA
TAGTATGAATGTCGCCTAAATATCATAATTTCGAGATTGCACTGGTCTAC
TTTCTGCTGCTAATACCATGGCCACCCACGAATGTGATCAGAATCCTCTG
CTCGCGAGATAACAGCCGACTGGTGCGCAAAATAGTGCGCTCCAAATGGA
CTCCCATTCTGGACAAGCATCAGGTGAAGCTGCCGCTGGAGTGCCCGCTC
CATCCGTTCCGGGATGTCTTTGCCCCCCGCCAGGATGCCAAGCAGAGGGA
TCGACCTACTCAGTGGACGTGCAGGAAATGTGGCAAGAGCTTCTACCAGG
AGAAGCATCTGGACTTACATTTCGACACACGCCACAAGAGCATCATCAAT
GAGGCGGAGGATGCCGTTTGCCTGGCCGACTTCTGCGACATTATGCGGTG
TGAGGTATTTGAAACGGAGGACGCATCTAGCCTGAAGTTTGGTGACCAGC
ACATTGTCACGGACATCGAGGTCTGGGGCGACTCCCTGGGCCAGAACTCC
GCGTTGGCCAAAGCGAATGCTGCCTACTTGAGCTTAATACCTAGAACTTC
CACATTGGGTGCCTCGCGTGCCGCCAAAGTACAAAATCGTCAATTACTTC
AAGACAAGCCAAGCCAGGCCAGCAAGCAGAATCAGTCACCGGCAGGTGAG
CGAACACATCCCCAATCCCACCACCATCCCCGAGATCGTGCATCCACCAC
AGCCAATCCCCTTCGCCTAGATCCATCGCCGGAGGACGGGTCGGCGGCTA
GGCCCAGGTCGGCGGGCGAGAAGCTGCTTAACAAGCTTAAGGAGCTGGGG
AAGGCGCACCTAAAGCCGGCAGCGGATCCGGAGGCCAGCAGGCAGAACGA
GACCGGCGAGGAGGAGGACGAAAAGGGGAGTGGACAACCTGAGGGCAGTG
GCCAGTCCGCTGATGAGGTCAAAACGGAGGAGGGATCGGGGGCTAATGGA
AACGGAAACAAGGCCAGAGCCAATTGCAAGCCGGAGGAGTTGAGTAAGCT
GAAGAACCGCTGCGAGATCCTGCTAAGGAGCTGCATCGGGGGATTGCTGC
TGTCCATGTCGGATCAGGCCTTCAAGGAGATGGAAGATGAAATGAACAAG
GCGGTGTGCTGGTACTTGACTTGCGATCGATACTGGGAGGATGGTCCCTT
GGAGCCCCGAGCCTTTCCCTGGGGTCTAATCGTGATCCTGATCTTCGTAC
TCTCCACTGGGATCTGCTTCTGCTACTACATTATCTGGATCCTGTTCGAC
TCCGAAGAAACGACAATCAACGCGAACCACTACTACGGCCAGGGATCCAT
CGGCGCCGGCGGGAGCATCTACATGCCAGGAGCAGCAGCGGGTCATCACT
ACCATGTGGACTATGCCACGCGGCACGACCTCGACCTGGACGCCGGCGGG
ATAGCTGGTCAGCAGCAGCAACAGCAGCACCTGCTTCAGGAGCAGCAGTA
CTATTACCAACAGCAGCAGCAACAGCAGCAGCAGGCAGCATCCGTTCGGG
ACTTGTACCCGGAGCAGGTTCAGTATCATCGCCACAGTCCGCGGCACTAC
ATCGCCGATCAGCGTCCGGTGGGGCCAACAGTGGGCACGCCCACCCAAGG
GGCCGTTCGCAGCAGCTCCTCCAACGCCAACACGCCGTTGCACCATCGGG
TGCAGCATTCGGGACAGCATCCCCACCTGCAACATCGTCACTCGACGAGC
CTGGCCTACCCACAGGACATTTTAGACCGACGCGACTATACAAGTAGCTC
CTCTCGCCAGATTGCCACCAACATAGTGGCTGGATCAGGATCGGGACAAG
GCGCTGGAGCTCCTGGCGATACACAGCGTCACTACAACACGCATCCGCGG
CCGCTGGAAACGAGGCATCGCCATGTGGGTTCCTCGCAGCAATCCCTTCG
TGCCTCTGCCTCCACGCACGAGATTGTGCAGCAGGAGGCGGGTCTGGGTC
AGAACGAGCACTACATCTACGTGACCTATCCACCGGACCTCAAGAAGCGC
TACTTCGAGTGATGCACTGGGTCTGGACTGGGTGCGCTCACAGATGATCG
CATTGTGGAGACTATGGTCGAGCTTTCAAAGAGTAGATTGGATTGATTGA
CCGGCAGATGGAGTGACCAAAGGGCCTTCAAAAGGAGATCCAAGAAACGA
TACCAAAGCCAGAGTTCAACTACAGTTGATCTTACATATTATGAGGATAT
TGAATGACCTTGAATGAGCGGAGGTCTGGTCGCCAACATAGCCCCAAAAG
TTGGATTTTTACTTTTAGCCTGCAAATTCTAGATTTGTGAACTGTGCTAT
TCTTTTTTAATTCTACAAAATAAATTGCAATATTTCTGTACAATAAAAAA
TAATGGTTATTTAATGGAAAAAAAAAAAAAAAA

RE51073.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:33:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-RA 2691 CG4133-RA 45..2662 1..2618 13090 100 Plus
CG4133.b 2561 CG4133.b 893..2561 950..2618 8345 100 Plus
CG4133.c 2675 CG4133.c 45..1543 1..1499 7495 100 Plus
CG4133.c 2675 CG4133.c 1557..2675 1500..2618 5595 100 Plus
CG4133.b 2561 CG4133.b 1..895 1..895 4475 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:42:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 457663..458780 1500..2617 5545 99.7 Plus
chr2L 23010047 chr2L 456828..457373 791..1336 2715 99.8 Plus
chr2L 23010047 chr2L 455582..455866 1..285 1395 99.3 Plus
chr2L 23010047 chr2L 456576..456768 602..794 950 99.5 Plus
chr2L 23010047 chr2L 456326..456508 422..604 915 100 Plus
chr2L 23010047 chr2L 457433..457597 1335..1499 825 100 Plus
chr2L 23010047 chr2L 456123..456264 284..425 710 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:43 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 457628..458746 1500..2618 5595 100 Plus
2L 23513712 2L 456793..457338 791..1336 2730 100 Plus
2L 23513712 2L 455543..455827 1..285 1425 100 Plus
2L 23513712 2L 456537..456729 602..794 965 100 Plus
2L 23513712 2L 456287..456469 422..604 915 100 Plus
2L 23513712 2L 457398..457562 1335..1499 825 100 Plus
2L 23513712 2L 456084..456225 284..425 710 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:01:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 457628..458746 1500..2618 5595 100 Plus
2L 23513712 2L 456793..457338 791..1336 2730 100 Plus
2L 23513712 2L 455543..455827 1..285 1425 100 Plus
2L 23513712 2L 456537..456729 602..794 965 100 Plus
2L 23513712 2L 456287..456469 422..604 915 100 Plus
2L 23513712 2L 457398..457562 1335..1499 825 100 Plus
2L 23513712 2L 456084..456225 284..425 710 100 Plus
Blast to na_te.dros performed 2019-03-16 13:42:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 1310..1360 1311..1261 120 70.6 Minus

RE51073.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:43:55 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 455582..455866 1..285 99 -> Plus
chr2L 456125..456262 286..423 100 -> Plus
chr2L 456328..456507 424..603 100 -> Plus
chr2L 456578..456768 604..794 99 -> Plus
chr2L 456832..457373 795..1336 99 -> Plus
chr2L 457435..457597 1337..1499 100 -> Plus
chr2L 457663..457822 1500..1659 100 == Plus
chr2L 457904..458780 1741..2617 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:21:00 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2004 259..2262 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:55:21 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2004 259..2262 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:12:06 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2004 259..2262 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:20:17 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2004 259..2262 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:38 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2004 259..2262 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:19:09 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2617 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:55:21 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2617 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:12:06 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 13..2629 1..2617 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:20:17 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 1..2617 1..2617 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:38 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
CG4133-RA 13..2629 1..2617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:55 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 456539..456729 604..794 100 -> Plus
2L 455543..455827 1..285 100 -> Plus
2L 456086..456223 286..423 100 -> Plus
2L 456289..456468 424..603 100 -> Plus
2L 456797..457338 795..1336 100 -> Plus
2L 457400..457562 1337..1499 100 -> Plus
2L 457628..458745 1500..2617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:55 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 456539..456729 604..794 100 -> Plus
2L 455543..455827 1..285 100 -> Plus
2L 456086..456223 286..423 100 -> Plus
2L 456289..456468 424..603 100 -> Plus
2L 456797..457338 795..1336 100 -> Plus
2L 457400..457562 1337..1499 100 -> Plus
2L 457628..458745 1500..2617 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:55 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 456539..456729 604..794 100 -> Plus
2L 455543..455827 1..285 100 -> Plus
2L 456086..456223 286..423 100 -> Plus
2L 456289..456468 424..603 100 -> Plus
2L 456797..457338 795..1336 100 -> Plus
2L 457400..457562 1337..1499 100 -> Plus
2L 457628..458745 1500..2617 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:12:06 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 456539..456729 604..794 100 -> Plus
arm_2L 455543..455827 1..285 100 -> Plus
arm_2L 456086..456223 286..423 100 -> Plus
arm_2L 456289..456468 424..603 100 -> Plus
arm_2L 456797..457338 795..1336 100 -> Plus
arm_2L 457400..457562 1337..1499 100 -> Plus
arm_2L 457628..458745 1500..2617 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:54:47 Download gff for RE51073.complete
Subject Subject Range Query Range Percent Splice Strand
2L 455543..455827 1..285 100 -> Plus
2L 456086..456223 286..423 100 -> Plus
2L 456289..456468 424..603 100 -> Plus
2L 456539..456729 604..794 100 -> Plus
2L 456797..457338 795..1336 100 -> Plus
2L 457400..457562 1337..1499 100 -> Plus
2L 457628..458745 1500..2617 100   Plus

RE51073.hyp Sequence

Translation from 258 to 2261

> RE51073.hyp
MSPKYHNFEIALVYFLLLIPWPPTNVIRILCSRDNSRLVRKIVRSKWTPI
LDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKH
LDLHFDTRHKSIINEAEDAVCLADFCDIMRCEVFETEDASSLKFGDQHIV
TDIEVWGDSLGQNSALAKANAAYLSLIPRTSTLGASRAAKVQNRQLLQDK
PSQASKQNQSPAGERTHPQSHHHPRDRASTTANPLRLDPSPEDGSAARPR
SAGEKLLNKLKELGKAHLKPAADPEASRQNETGEEEDEKGSGQPEGSGQS
ADEVKTEEGSGANGNGNKARANCKPEELSKLKNRCEILLRSCIGGLLLSM
SDQAFKEMEDEMNKAVCWYLTCDRYWEDGPLEPRAFPWGLIVILIFVLST
GICFCYYIIWILFDSEETTINANHYYGQGSIGAGGSIYMPGAAAGHHYHV
DYATRHDLDLDAGGIAGQQQQQQHLLQEQQYYYQQQQQQQQQAASVRDLY
PEQVQYHRHSPRHYIADQRPVGPTVGTPTQGAVRSSSSNANTPLHHRVQH
SGQHPHLQHRHSTSLAYPQDILDRRDYTSSSSRQIATNIVAGSGSGQGAG
APGDTQRHYNTHPRPLETRHRHVGSSQQSLRASASTHEIVQQEAGLGQNE
HYIYVTYPPDLKKRYFE*

RE51073.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-PA 667 CG4133-PA 1..667 1..667 3576 100 Plus
CG4133-PB 642 CG4133-PB 1..642 1..667 3400 96.3 Plus
CG4133-PC 583 CG4133-PC 1..414 1..414 2217 100 Plus
dar1-PB 751 CG12029-PB 307..491 468..659 162 31 Plus

RE51073.pep Sequence

Translation from 258 to 2261

> RE51073.pep
MSPKYHNFEIALVYFLLLIPWPPTNVIRILCSRDNSRLVRKIVRSKWTPI
LDKHQVKLPLECPLHPFRDVFAPRQDAKQRDRPTQWTCRKCGKSFYQEKH
LDLHFDTRHKSIINEAEDAVCLADFCDIMRCEVFETEDASSLKFGDQHIV
TDIEVWGDSLGQNSALAKANAAYLSLIPRTSTLGASRAAKVQNRQLLQDK
PSQASKQNQSPAGERTHPQSHHHPRDRASTTANPLRLDPSPEDGSAARPR
SAGEKLLNKLKELGKAHLKPAADPEASRQNETGEEEDEKGSGQPEGSGQS
ADEVKTEEGSGANGNGNKARANCKPEELSKLKNRCEILLRSCIGGLLLSM
SDQAFKEMEDEMNKAVCWYLTCDRYWEDGPLEPRAFPWGLIVILIFVLST
GICFCYYIIWILFDSEETTINANHYYGQGSIGAGGSIYMPGAAAGHHYHV
DYATRHDLDLDAGGIAGQQQQQQHLLQEQQYYYQQQQQQQQQAASVRDLY
PEQVQYHRHSPRHYIADQRPVGPTVGTPTQGAVRSSSSNANTPLHHRVQH
SGQHPHLQHRHSTSLAYPQDILDRRDYTSSSSRQIATNIVAGSGSGQGAG
APGDTQRHYNTHPRPLETRHRHVGSSQQSLRASASTHEIVQQEAGLGQNE
HYIYVTYPPDLKKRYFE*

RE51073.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 02:38:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20663-PA 701 GF20663-PA 1..701 1..667 2691 79.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 02:38:30
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24723-PA 669 GG24723-PA 1..669 1..667 3573 99 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 02:38:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11227-PA 635 GH11227-PA 7..632 12..667 2303 70.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4133-PA 667 CG4133-PA 1..667 1..667 3576 100 Plus
CG4133-PB 642 CG4133-PB 1..642 1..667 3400 96.3 Plus
CG4133-PC 583 CG4133-PC 1..414 1..414 2217 100 Plus
dar1-PB 751 CG12029-PB 307..491 468..659 162 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 02:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21701-PA 639 GI21701-PA 7..636 12..667 2312 71.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 02:38:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18880-PA 683 GL18880-PA 1..391 1..385 1519 79 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 02:38:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17979-PA 684 GA17979-PA 1..681 1..667 2331 74.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 02:38:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM16746-PA 652 GM16746-PA 1..652 1..667 3473 96.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 02:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23028-PA 667 GD23028-PA 1..667 1..667 3585 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 02:38:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17779-PA 625 GJ17779-PA 7..622 12..667 2166 69.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 02:38:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK24396-PA 754 GK24396-PA 1..670 1..667 2241 65.9 Plus
Dwil\GK24396-PA 754 GK24396-PA 603..751 510..667 313 49.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 02:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE16858-PA 669 GE16858-PA 1..669 1..667 3562 98.5 Plus