Clone RE51612 Report

Search the DGRC for RE51612

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:516
Well:12
Vector:pFlc-1
Associated Gene/TranscriptCG11980-RC
Protein status:RE51612.pep: gold
Sequenced Size:1192

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11980 2004-03-31 Blastp of sequenced clone
CG11980 2008-04-29 Release 5.5 accounting
CG11980 2008-08-15 Release 5.9 accounting
CG11980 2008-12-18 5.12 accounting

Clone Sequence Records

RE51612.complete Sequence

1192 bp (1192 high quality bases) assembled on 2004-03-31

GenBank Submission: BT012460

> RE51612.complete
TGGGAAAAGACCGTCGCTAATGTTCCGATTGTTACCTCGTTTTCCAGGAA
AACTATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGG
ATCGGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTT
TATGCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTC
GGGACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGC
GGCGTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTT
CAAGGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACG
TTGTCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGT
GTTATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGA
AAACCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAAC
TGGACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATA
TACAAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTC
CTGGCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGG
ATACTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCC
TGGATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAA
CGTCCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGA
AGTCTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCC
AAGCTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCC
AGTGACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGC
GCGGACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTC
GAATTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGC
TGCCATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAT
ATAATACGACTTAAAGTTATGCTTTTGAAATTGAAAAACAATAATTAGAT
CGCATTTAATTCTGGTGTTATTACGCAAAAAAAAAAAAAAAA

RE51612.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:02:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-RC 1239 CG11980-RC 45..1219 3..1177 5875 100 Plus
CG11980-RB 1318 CG11980-RB 91..1262 3..1177 5805 99.7 Plus
CG11980-RA 1294 CG11980-RA 106..1238 45..1177 5665 100 Plus
CG11980-RA 1294 CG11980-RA 1..42 3..44 210 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 14:22:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 4830400..4831221 355..1176 4110 100 Plus
chr3R 27901430 chr3R 4830033..4830346 45..358 1555 99.7 Plus
chr3R 27901430 chr3R 4829928..4829969 3..44 210 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 14:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9004506..9005328 355..1177 4115 100 Plus
3R 32079331 3R 9004139..9004452 45..358 1570 100 Plus
3R 32079331 3R 9004034..9004075 3..44 210 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 8745337..8746159 355..1177 4115 100 Plus
3R 31820162 3R 8744970..8745283 45..358 1570 100 Plus
3R 31820162 3R 8744865..8744906 3..44 210 100 Plus
Blast to na_te.dros performed on 2019-03-15 14:22:48 has no hits.

RE51612.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 14:23:35 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 4829924..4829969 1..44 95 -> Plus
chr3R 4830033..4830345 45..357 99 -> Plus
chr3R 4830403..4831221 358..1176 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:21:08 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 20..1099 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:37:49 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 20..1099 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 00:26:29 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 20..1099 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:21:38 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 20..1099 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 20:56:52 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1080 20..1099 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:45:38 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1178 1..1176 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:37:49 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1178 1..1176 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:26:29 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 14..1191 1..1176 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:21:38 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 1..1178 1..1176 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 20:56:52 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
CG11980-RC 14..1191 1..1176 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:35 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004030..9004075 1..44 95 -> Plus
3R 9004139..9004451 45..357 100 -> Plus
3R 9004509..9005327 358..1176 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:35 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004030..9004075 1..44 95 -> Plus
3R 9004139..9004451 45..357 100 -> Plus
3R 9004509..9005327 358..1176 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 14:23:35 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9004030..9004075 1..44 95 -> Plus
3R 9004139..9004451 45..357 100 -> Plus
3R 9004509..9005327 358..1176 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:26:29 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 4829752..4829797 1..44 95 -> Plus
arm_3R 4829861..4830173 45..357 100 -> Plus
arm_3R 4830231..4831049 358..1176 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:59:02 Download gff for RE51612.complete
Subject Subject Range Query Range Percent Splice Strand
3R 8744970..8745282 45..357 100 -> Plus
3R 8745340..8746158 358..1176 100   Plus
3R 8744861..8744906 1..44 95 -> Plus

RE51612.hyp Sequence

Translation from 0 to 1098

> RE51612.hyp
WRKRPSLMFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVAC
FMLKQLDEYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQIT
FKETFSSVRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSP
ENLQTAFIQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNP
SWQETGVDIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAK
NVHPTGEILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGV
PVTPGSYLGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEE
AAMLLAKKSTEWTEEQ*

RE51612.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 359 CG11980-PC 1..359 8..366 1911 100 Plus
CG11980-PB 358 CG11980-PB 1..358 8..366 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 22..366 1839 100 Plus

RE51612.pep Sequence

Translation from 19 to 1098

> RE51612.pep
MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD
EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS
VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF
IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV
DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE
ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY
LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK
KSTEWTEEQ*

RE51612.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16574-PA 359 GF16574-PA 6..359 4..358 1538 78.3 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14318-PA 358 GG14318-PA 1..358 1..359 1646 85.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19378-PA 352 GH19378-PA 11..352 17..358 1361 72.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG11980-PC 359 CG11980-PC 1..359 1..359 1911 100 Plus
CG11980-PB 358 CG11980-PB 1..358 1..359 1884 99.4 Plus
CG11980-PA 345 CG11980-PA 1..345 15..359 1839 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22581-PA 349 GI22581-PA 10..349 19..358 1329 71 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12112-PA 344 GL12112-PA 1..344 15..358 1387 72.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:25:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA11307-PA 344 GA11307-PA 1..344 15..358 1403 73 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:25:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM23777-PA 362 GM23777-PA 1..359 1..359 1811 92.8 Plus
Dsec\GM19272-PA 172 GM19272-PA 1..169 191..359 845 92.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18587-PA 362 GD18587-PA 1..357 1..357 1801 92.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:25:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10302-PA 351 GJ10302-PA 10..348 20..358 1376 72.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:25:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK11675-PA 363 GK11675-PA 1..361 1..358 1369 70.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:25:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25920-PA 358 GE25920-PA 1..358 1..359 1717 88.6 Plus