BDGP Sequence Production Resources |
Search the DGRC for RE51612
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 516 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG11980-RC |
Protein status: | RE51612.pep: gold |
Sequenced Size: | 1192 |
Gene | Date | Evidence |
---|---|---|
CG11980 | 2004-03-31 | Blastp of sequenced clone |
CG11980 | 2008-04-29 | Release 5.5 accounting |
CG11980 | 2008-08-15 | Release 5.9 accounting |
CG11980 | 2008-12-18 | 5.12 accounting |
1192 bp (1192 high quality bases) assembled on 2004-03-31
GenBank Submission: BT012460
> RE51612.complete TGGGAAAAGACCGTCGCTAATGTTCCGATTGTTACCTCGTTTTCCAGGAA AACTATCTATAATGACTGGAGTTACCCCACCAAAACGCTCTCCCCTTTGG ATCGGCACACACAGCGGCACTTTTCACTGCGACGAGTTGGTCGCATGTTT TATGCTCAAGCAATTGGATGAGTACAAAAACGCAGAGATTTTCCGCAGTC GGGACAACAAGGCTTTGAAGGAGAAGTGCGATATAATTGTCGACGTGGGC GGCGTTTATGATCATGCCAAGAAATTGTACGATCACCACCAAATAACCTT CAAGGAGACTTTTAGTTCCGTTCGCCCAGATGTAAGCGAGGACTACAACG TTGTCAGGCTAAGCAGTGCTGGACTGGTCTACTGTCACTATGGCGAGCGT GTTATACAGAGCATCCTGCAGCGCGAAAAGGGAATTAAACTCTCACCGGA AAACCTGCAAACGGCCTTTATTCAGATCTATAGGAATTTTATCAACGAAC TGGACGCAATTGATAATGGAGTGCCCATGTTCGAGGGCGTTGAGCCTATA TACAAAATCTCCACTCATCTATCTGCCCGCATTGCCAAACTGAATCCGTC CTGGCAGGAAACTGGCGTAGACATCGAAGACCGATTCAGACAGGCGATGG ATACTGCAGGTCGTGAGTTTGTGGACAACGTTGTGGAGGTATCATGTTCC TGGATTCCAGCCCGGGATCACGTACGAGAGGCTCTTAAAAATGCCAAGAA CGTCCATCCCACCGGCGAGATTCTTGTGTTGAAGAATTTCTGCCCCTGGA AGTCTCATCTGTTCGATCTTGAAAAGGAGTACAAGGTGGAGGGTGTGCCC AAGCTGGTCGTCTTCAACAGCGGCAATAGTTGGCGAGTGGCCGGAGTTCC AGTGACGCCTGGCAGCTATCTGGGCCGCAAATTTCTGCCCACTCCTTGGC GCGGACTGATGGACGATGAACTATGCGATAAGGCGAGCATCAAAGATCTC GAATTCATCCATCACACAGGATTTATTGGCGGGGCAAAAACCGAGGAGGC TGCCATGTTGTTGGCCAAGAAATCCACCGAGTGGACAGAAGAGCAATAAT ATAATACGACTTAAAGTTATGCTTTTGAAATTGAAAAACAATAATTAGAT CGCATTTAATTCTGGTGTTATTACGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11980-RC | 1239 | CG11980-RC | 45..1219 | 3..1177 | 5875 | 100 | Plus |
CG11980-RB | 1318 | CG11980-RB | 91..1262 | 3..1177 | 5805 | 99.7 | Plus |
CG11980-RA | 1294 | CG11980-RA | 106..1238 | 45..1177 | 5665 | 100 | Plus |
CG11980-RA | 1294 | CG11980-RA | 1..42 | 3..44 | 210 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 4830400..4831221 | 355..1176 | 4110 | 100 | Plus |
chr3R | 27901430 | chr3R | 4830033..4830346 | 45..358 | 1555 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 4829928..4829969 | 3..44 | 210 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 4829924..4829969 | 1..44 | 95 | -> | Plus |
chr3R | 4830033..4830345 | 45..357 | 99 | -> | Plus |
chr3R | 4830403..4831221 | 358..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1080 | 20..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1080 | 20..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1080 | 20..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1080 | 20..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1080 | 20..1099 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1178 | 1..1176 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1178 | 1..1176 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 14..1191 | 1..1176 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 1..1178 | 1..1176 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11980-RC | 14..1191 | 1..1176 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9004030..9004075 | 1..44 | 95 | -> | Plus |
3R | 9004139..9004451 | 45..357 | 100 | -> | Plus |
3R | 9004509..9005327 | 358..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9004030..9004075 | 1..44 | 95 | -> | Plus |
3R | 9004139..9004451 | 45..357 | 100 | -> | Plus |
3R | 9004509..9005327 | 358..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9004030..9004075 | 1..44 | 95 | -> | Plus |
3R | 9004139..9004451 | 45..357 | 100 | -> | Plus |
3R | 9004509..9005327 | 358..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 4829752..4829797 | 1..44 | 95 | -> | Plus |
arm_3R | 4829861..4830173 | 45..357 | 100 | -> | Plus |
arm_3R | 4830231..4831049 | 358..1176 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 8744970..8745282 | 45..357 | 100 | -> | Plus |
3R | 8745340..8746158 | 358..1176 | 100 | Plus | |
3R | 8744861..8744906 | 1..44 | 95 | -> | Plus |
Translation from 0 to 1098
> RE51612.hyp WRKRPSLMFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVAC FMLKQLDEYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQIT FKETFSSVRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSP ENLQTAFIQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNP SWQETGVDIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAK NVHPTGEILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGV PVTPGSYLGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEE AAMLLAKKSTEWTEEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11980-PC | 359 | CG11980-PC | 1..359 | 8..366 | 1911 | 100 | Plus |
CG11980-PB | 358 | CG11980-PB | 1..358 | 8..366 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 22..366 | 1839 | 100 | Plus |
Translation from 19 to 1098
> RE51612.pep MFRLLPRFPGKLSIMTGVTPPKRSPLWIGTHSGTFHCDELVACFMLKQLD EYKNAEIFRSRDNKALKEKCDIIVDVGGVYDHAKKLYDHHQITFKETFSS VRPDVSEDYNVVRLSSAGLVYCHYGERVIQSILQREKGIKLSPENLQTAF IQIYRNFINELDAIDNGVPMFEGVEPIYKISTHLSARIAKLNPSWQETGV DIEDRFRQAMDTAGREFVDNVVEVSCSWIPARDHVREALKNAKNVHPTGE ILVLKNFCPWKSHLFDLEKEYKVEGVPKLVVFNSGNSWRVAGVPVTPGSY LGRKFLPTPWRGLMDDELCDKASIKDLEFIHHTGFIGGAKTEEAAMLLAK KSTEWTEEQ*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16574-PA | 359 | GF16574-PA | 6..359 | 4..358 | 1538 | 78.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14318-PA | 358 | GG14318-PA | 1..358 | 1..359 | 1646 | 85.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19378-PA | 352 | GH19378-PA | 11..352 | 17..358 | 1361 | 72.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11980-PC | 359 | CG11980-PC | 1..359 | 1..359 | 1911 | 100 | Plus |
CG11980-PB | 358 | CG11980-PB | 1..358 | 1..359 | 1884 | 99.4 | Plus |
CG11980-PA | 345 | CG11980-PA | 1..345 | 15..359 | 1839 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22581-PA | 349 | GI22581-PA | 10..349 | 19..358 | 1329 | 71 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12112-PA | 344 | GL12112-PA | 1..344 | 15..358 | 1387 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11307-PA | 344 | GA11307-PA | 1..344 | 15..358 | 1403 | 73 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM23777-PA | 362 | GM23777-PA | 1..359 | 1..359 | 1811 | 92.8 | Plus |
Dsec\GM19272-PA | 172 | GM19272-PA | 1..169 | 191..359 | 845 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18587-PA | 362 | GD18587-PA | 1..357 | 1..357 | 1801 | 92.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10302-PA | 351 | GJ10302-PA | 10..348 | 20..358 | 1376 | 72.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK11675-PA | 363 | GK11675-PA | 1..361 | 1..358 | 1369 | 70.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25920-PA | 358 | GE25920-PA | 1..358 | 1..359 | 1717 | 88.6 | Plus |