Clone RE51662 Report

Search the DGRC for RE51662

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:516
Well:62
Vector:pFlc-1
Associated Gene/TranscriptMipp1-RA
Protein status:RE51662.pep: gold
Preliminary Size:1728
Sequenced Size:1773

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4123 2001-12-14 Blastp of sequenced clone
CG4123 2002-01-01 Sim4 clustering to Release 2
CG4123 2003-01-01 Sim4 clustering to Release 3
Mipp1 2008-04-29 Release 5.5 accounting
Mipp1 2008-08-15 Release 5.9 accounting
Mipp1 2008-12-18 5.12 accounting

Clone Sequence Records

RE51662.complete Sequence

1773 bp (1773 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071426

> RE51662.complete
AGTAAACTTGAACGTCTGAAACGATGGAGGTGGACTTTGGGGCGCTCTAT
TATTAGTTGAATCAGAGCTATGCGCCTGCTGATATTGCTACTGCTGCCAC
TGGTGGCCATCGCCCAAGATGACTACTGCTTCAGCAAGGACACCTCCCGC
CTCCAGACCCGCCAGTTCTCCTCGAAGACCGCCTATCAGATCGTCAAGGG
CACGGACATTGACAAGCAGTACCTGGTGCCCGGCTGTCAGCCCCAGAAGA
TGTGGATCTTTCACAGGCACGGCACACGACTGCCCAAGAAGAGCATGATC
AACAAGGCGTCCAGGGTGGCTGAGCTGCGCGATCTCATCATTAACAACTA
CCAAGTGGCCAGGACCAAGCCCGAAACGGATGCTCTCTGCCAGACGGATC
TGATTGCCATCAAGTTGTGGAAGTGGAACAGCAGCATAACGCCCGACATG
GAGGAGTATCTGACCGCCCAGGGCTACGAGGATCTCAGGGGCACGGCCAA
GCTGTACCAGCGGTACTATCCCACTGTGCTGACCGCTAACTATAATGACA
CTTACTACCAGTTCCGCCATACGGACACCCAGCGCACCACGGAAAGTTTC
AAGGCTTTCGCCGAGGGTCTGTTTGGATCCCAAAACGCTGCTCATCCCGT
CGAGATTCCCAAGCAGGATCTGCTGCTGCGTCCCTATGACTATTGCTCCT
CTTTCAAGAATGTGAACTACAAGGATGAGGGCTCTGAGTACTACAAGTTT
CATCAGTCGAAGCTGTACAACGACACGTTGGCGGATATCTCCACTCGATT
GGGTTTCCTTTACACCCTGGAGGAGGCGGACATCAAGCTAATGTACGATA
TGTGTCGCTATGAGCAGGCGTGGAATGTGGACCGCAATAGCGTCTGGTGC
GGCGCCTTCTTGCCGGAGCAAATAACGGTCTTTGAGTACCTGGAAGATCT
AAAGTACTACTATGGCTCGGGCTATGGTTTCCCGGAAAACGCACATCTCA
ACTGCCGACTGGTGCAGGACCTGCTCACCCACCTGAGCAATCCGGTGTCG
CCGCATGTGGTAGCTCATTTCGGTCACTCGACTGGTCTCCTAACTCTCCT
AACTGCGCTGGGAATCCAGAAGGACGACATCAAGTTGCGGGCAGACAATT
ACGATAGTTTGACGAGCCGCCGTTGGAAGAGCAGCCTGATCGATCCGTTT
GCCGCCAATTTCGTGGCGGTGAAATACGACTGTCCGGCGGACTTGGATCG
CGAGAAGGTGGTCTTCTTCCTCAACCAGCAGGCCGTGCAGCTGGACTGGT
GCAGCGTCGGTCTGTGCAAGTGGTCAGATGTCCTCGAGAAGTACAAGACC
ATTGCGGATGCGGATTGTGGAGAATACTACTGCCGGACGGGAGGTGCTCC
ATCGCTGGGATCCGGAGTTGGCGGACTTCTGGCCACCACGCTCGCCGCCA
TGCTGGTCTACTTAATGCACTAACTTTCGATTAGATTAGTTTTTAATTCG
TAATGTACAAATTTCGTACCAAATGGAGGGACGCCACGCGGCGGATGTCA
GTCAAGTATTTTTCGATTTAGATTTTTTTACTTTTAATCCAGCAACAGCA
CAATTCTTCACACAGTCAAGAAGTCACACTACACACAAAAAACACACACA
ACCAGATACTGAAATGTTCAACTTAACGATTTTTCTAAACGCTTAATGAA
CGTTGATGGCGCTCCAGTCAGAATTAGCTTTATATTAACTGAATAAAATG
AGTCTTTAAAAAAAAAAAAAAAA

RE51662.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:39:40
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-RB 1907 Mipp1-RB 1..1761 1..1761 8805 100 Plus
Mipp1-RA 2318 Mipp1-RA 436..2133 64..1761 8490 100 Plus
Mipp1.a 1832 Mipp1.a 141..1832 66..1757 8460 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:37:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 16553398..16554278 1757..877 4390 99.9 Minus
chr3L 24539361 chr3L 16555370..16555631 324..63 1310 100 Minus
chr3L 24539361 chr3L 16554480..16554723 803..560 1220 100 Minus
chr3L 24539361 chr3L 16554794..16555032 561..323 1195 100 Minus
chr3L 24539361 chr3L 16554334..16554410 879..803 385 100 Minus
chr3L 24539361 chr3L 16563036..16563100 65..1 325 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:00:51 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 16563633..16564517 1761..877 4425 100 Minus
3L 28110227 3L 16565609..16565870 324..63 1310 100 Minus
3L 28110227 3L 16564719..16564962 803..560 1220 100 Minus
3L 28110227 3L 16565033..16565271 561..323 1195 100 Minus
3L 28110227 3L 16564573..16564649 879..803 385 100 Minus
3L 28110227 3L 16573266..16573330 65..1 325 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:06:53
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 16556733..16557617 1761..877 4425 100 Minus
3L 28103327 3L 16558709..16558970 324..63 1310 100 Minus
3L 28103327 3L 16557819..16558062 803..560 1220 100 Minus
3L 28103327 3L 16558133..16558371 561..323 1195 100 Minus
3L 28103327 3L 16557673..16557749 879..803 385 100 Minus
3L 28103327 3L 16566366..16566430 65..1 325 100 Minus
Blast to na_te.dros performed on 2019-03-16 03:37:08 has no hits.

RE51662.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:37:52 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 16553398..16554278 877..1757 99 <- Minus
chr3L 16554337..16554409 804..876 100 <- Minus
chr3L 16554480..16554721 562..803 100 <- Minus
chr3L 16554794..16555030 325..561 100 <- Minus
chr3L 16555370..16555628 66..324 100 <- Minus
chr3L 16563036..16563100 1..65 100   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:21:09 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RA 1..1404 70..1473 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:04:04 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RA 1..1404 70..1473 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:20 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 1..1404 70..1473 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:28:39 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RA 1..1404 70..1473 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:07 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 1..1404 70..1473 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:31:25 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:04:04 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:20 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 5..1761 1..1757 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:28:39 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 1..1757 1..1757 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:07 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
Mipp1-RB 5..1761 1..1757 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:52 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16563637..16564517 877..1757 100 <- Minus
3L 16564576..16564648 804..876 100 <- Minus
3L 16564719..16564960 562..803 100 <- Minus
3L 16565033..16565269 325..561 100 <- Minus
3L 16565609..16565867 66..324 100 <- Minus
3L 16573266..16573330 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:52 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16563637..16564517 877..1757 100 <- Minus
3L 16564576..16564648 804..876 100 <- Minus
3L 16564719..16564960 562..803 100 <- Minus
3L 16565033..16565269 325..561 100 <- Minus
3L 16565609..16565867 66..324 100 <- Minus
3L 16573266..16573330 1..65 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:52 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16563637..16564517 877..1757 100 <- Minus
3L 16564576..16564648 804..876 100 <- Minus
3L 16564719..16564960 562..803 100 <- Minus
3L 16565033..16565269 325..561 100 <- Minus
3L 16565609..16565867 66..324 100 <- Minus
3L 16573266..16573330 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:20 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 16556737..16557617 877..1757 100 <- Minus
arm_3L 16557676..16557748 804..876 100 <- Minus
arm_3L 16557819..16558060 562..803 100 <- Minus
arm_3L 16558133..16558369 325..561 100 <- Minus
arm_3L 16558709..16558967 66..324 100 <- Minus
arm_3L 16566366..16566430 1..65 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:04:38 Download gff for RE51662.complete
Subject Subject Range Query Range Percent Splice Strand
3L 16557819..16558060 562..803 100 <- Minus
3L 16556737..16557617 877..1757 100 <- Minus
3L 16557676..16557748 804..876 100 <- Minus
3L 16558133..16558369 325..561 100 <- Minus
3L 16558709..16558967 66..324 100 <- Minus
3L 16566366..16566430 1..65 100   Minus

RE51662.pep Sequence

Translation from 69 to 1472

> RE51662.pep
MRLLILLLLPLVAIAQDDYCFSKDTSRLQTRQFSSKTAYQIVKGTDIDKQ
YLVPGCQPQKMWIFHRHGTRLPKKSMINKASRVAELRDLIINNYQVARTK
PETDALCQTDLIAIKLWKWNSSITPDMEEYLTAQGYEDLRGTAKLYQRYY
PTVLTANYNDTYYQFRHTDTQRTTESFKAFAEGLFGSQNAAHPVEIPKQD
LLLRPYDYCSSFKNVNYKDEGSEYYKFHQSKLYNDTLADISTRLGFLYTL
EEADIKLMYDMCRYEQAWNVDRNSVWCGAFLPEQITVFEYLEDLKYYYGS
GYGFPENAHLNCRLVQDLLTHLSNPVSPHVVAHFGHSTGLLTLLTALGIQ
KDDIKLRADNYDSLTSRRWKSSLIDPFAANFVAVKYDCPADLDREKVVFF
LNQQAVQLDWCSVGLCKWSDVLEKYKTIADADCGEYYCRTGGAPSLGSGV
GGLLATTLAAMLVYLMH*

RE51662.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 20:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10522-PA 467 GF10522-PA 18..467 17..467 2055 82 Plus
Dana\GF20313-PA 2062 GF20313-PA 57..224 32..205 245 35.8 Plus
Dana\GF20313-PA 2062 GF20313-PA 1851..2031 241..413 218 32.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 20:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15873-PA 467 GG15873-PA 1..467 1..467 2445 96.6 Plus
Dere\GG17695-PA 241 GG17695-PA 8..205 5..204 239 31.7 Plus
Dere\GG17696-PA 1858 GG17696-PA 1645..1855 241..440 217 30.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 20:30:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24977-PA 465 GH24977-PA 18..465 15..467 1768 70.2 Plus
Dgri\GH15581-PA 529 GH15581-PA 82..529 15..467 1767 70 Plus
Dgri\GH24109-PA 448 GH24109-PA 33..432 20..426 452 29.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-PC 467 CG4123-PC 1..467 1..467 2495 100 Plus
Mipp1-PA 467 CG4123-PA 1..467 1..467 2495 100 Plus
Mipp1-PB 467 CG4123-PB 1..467 1..467 2495 100 Plus
Mipp2-PA 453 CG4317-PA 10..452 3..439 473 29.7 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 20:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16858-PA 464 GI16858-PA 15..464 13..467 1771 70.3 Plus
Dmoj\GI16368-PA 442 GI16368-PA 12..403 5..406 489 30.7 Plus
Dmoj\GI10863-PA 66 GI10863-PA 1..66 398..467 237 62.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 20:30:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL17983-PA 472 GL17983-PA 19..472 15..467 1897 76 Plus
Dper\GL14954-PA 1648 GL14954-PA 27..194 31..204 234 32.4 Plus
Dper\GL14954-PA 1648 GL14954-PA 1447..1613 247..411 202 33.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 20:30:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA17974-PA 472 GA17974-PA 19..472 15..467 1899 76.2 Plus
Dpse\GA22271-PA 222 GA22271-PA 49..216 31..204 231 32.4 Plus
Dpse\GA18105-PA 1918 GA18105-PA 1717..1883 247..411 200 33.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 20:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24391-PA 467 GM24391-PA 1..467 1..467 2498 98.7 Plus
Dsec\GM12595-PA 453 GM12595-PA 19..452 12..439 436 29.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 20:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12462-PA 467 GD12462-PA 1..467 1..467 2498 98.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 20:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12608-PA 464 GJ12608-PA 14..464 12..467 1833 73 Plus
Dvir\GJ12609-PA 462 GJ12609-PA 14..462 12..467 1733 69.3 Plus
Dvir\GJ16740-PA 221 GJ16740-PA 26..204 247..425 267 35.1 Plus
Dvir\GJ16739-PA 1654 GJ16739-PA 11..206 4..204 237 32.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 20:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK17479-PA 466 GK17479-PA 19..466 15..467 1906 75.7 Plus
Dwil\GK17412-PA 1985 GK17412-PA 37..206 28..204 241 33.9 Plus
Dwil\GK17412-PA 1985 GK17412-PA 1785..1949 247..411 224 34.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 20:30:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE22212-PA 467 GE22212-PA 1..467 1..467 2446 96.6 Plus
Dyak\GE16484-PA 1143 GE16484-PA 20..209 12..208 236 30.8 Plus
Dyak\GE16484-PA 1143 GE16484-PA 932..1142 241..442 207 29.4 Plus

RE51662.hyp Sequence

Translation from 69 to 1472

> RE51662.hyp
MRLLILLLLPLVAIAQDDYCFSKDTSRLQTRQFSSKTAYQIVKGTDIDKQ
YLVPGCQPQKMWIFHRHGTRLPKKSMINKASRVAELRDLIINNYQVARTK
PETDALCQTDLIAIKLWKWNSSITPDMEEYLTAQGYEDLRGTAKLYQRYY
PTVLTANYNDTYYQFRHTDTQRTTESFKAFAEGLFGSQNAAHPVEIPKQD
LLLRPYDYCSSFKNVNYKDEGSEYYKFHQSKLYNDTLADISTRLGFLYTL
EEADIKLMYDMCRYEQAWNVDRNSVWCGAFLPEQITVFEYLEDLKYYYGS
GYGFPENAHLNCRLVQDLLTHLSNPVSPHVVAHFGHSTGLLTLLTALGIQ
KDDIKLRADNYDSLTSRRWKSSLIDPFAANFVAVKYDCPADLDREKVVFF
LNQQAVQLDWCSVGLCKWSDVLEKYKTIADADCGEYYCRTGGAPSLGSGV
GGLLATTLAAMLVYLMH*

RE51662.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:42:15
Subject Length Description Subject Range Query Range Score Percent Strand
Mipp1-PC 467 CG4123-PC 1..467 1..467 2495 100 Plus
Mipp1-PA 467 CG4123-PA 1..467 1..467 2495 100 Plus
Mipp1-PB 467 CG4123-PB 1..467 1..467 2495 100 Plus
Mipp2-PA 453 CG4317-PA 10..452 3..439 473 29.7 Plus