BDGP Sequence Production Resources |
Search the DGRC for RE51713
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 517 |
Well: | 13 |
Vector: | pFlc-1 |
Associated Gene/Transcript | MED27-RA |
Protein status: | RE51713.pep: gold |
Preliminary Size: | 927 |
Sequenced Size: | 1089 |
Gene | Date | Evidence |
---|---|---|
CG1245 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1245 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1245 | 2003-01-22 | Blastp of sequenced clone |
MED27 | 2008-04-29 | Release 5.5 accounting |
MED27 | 2008-08-15 | Release 5.9 accounting |
MED27 | 2008-12-18 | 5.12 accounting |
1089 bp (1089 high quality bases) assembled on 2003-01-22
GenBank Submission: AY075500
> RE51713.complete ATTGGCATTCGCAAAGAAAACAAAGTAAACATTTTTTTTTGCCGGAACGA GAATTACCGTTATGGATAAGTTAAATTCCACTCTAACTGCCGTCAAAAAC CTGCGGTCCAACGTAAGGCTGTGCTTCGAGCACCTGGCCGATGGAACCGA TGGGGAGAGCGGCGAGGAGAGCCGGAATAAGTTCGTAAATGACTTCCAGG AGAGATTCGCAGCCATCAACTCGCAAATACGTGAGGTAGAGCAGCTGATT AATGGACTGCCGGTGCCACCAACACCCTATTCTCTCGGGAACACCGCCTA CCTGGCGCAGGAAACTTCGCAGGATCGACAGGCTCTATACCCTCAGCTGG TGAACAGCTACAAGTGGATGGACAAGGTGCACGACCACAGCTTCTTGGCC TTCAACAATCTCAACCAGAACACACTCAGGCGCTCCTACAATTACTGCTC GCAGAAGCGCCAGCGACTGCCCTTCTCGTCCTTCAACAACGATCCAGACC ACATAGATAAGCTCCTGAGTGAGATCAACACCCCTCCGCATACTTCGTAC AGAATTTTTCGTCCCTTCGGCACAAACGCTGTCACCATCGTAACAATAAG TAACGTGATGAAGGCGGCTATTGTCTTCAAAGGAGTGCTTATAGAGTGGG TTACGGTTAAGGGATTCGATGAGCCGCTGGAGCATGACGACCTGTGGGCC GAGTCACGTTACGAGGTGTTCCGCAAAGTCCAGGATCATGCTCACTCAGC AATGCTGCATTTCTTTTCGCCGACGTTGCCCGATCTGGCAGTGAAAAGCT ATATAACCTGGCTGAACAGCCACGTCAAACTTTTCCTGGAGCCCTGCAAG CGTTGTGGGAAATTCGTGGTGAACGGATTGCCTCCGACGTGGCGGGACCT GCGCACTCTAGAACCCTTCCACGAGGACTGCCGAAATTGCTAAGGATTTT TAAGTAATTTAACGCCGATAGTTGTAACTTGTATACTTCATTTATTTCAA AAACAAAAATTATATGTACTTTGAATGCATGCGGGCGGATTTTTTAAAAT CGCTGCGCCCGACTGAATAACTACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 1481419..1481994 | 499..1074 | 2880 | 100 | Plus |
chr3R | 27901430 | chr3R | 1481091..1481358 | 231..498 | 1340 | 100 | Plus |
chr3R | 27901430 | chr3R | 1480803..1481033 | 1..231 | 1155 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 1480803..1481033 | 1..231 | 100 | -> | Plus |
chr3R | 1481092..1481358 | 232..498 | 100 | -> | Plus |
chr3R | 1481419..1481994 | 499..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..882 | 62..943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..882 | 62..943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..882 | 62..943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..882 | 62..943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..882 | 62..943 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..1074 | 1..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..1074 | 1..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 7..1080 | 1..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 1..1074 | 1..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
MED27-RA | 7..1080 | 1..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5655145..5655375 | 1..231 | 100 | -> | Plus |
3R | 5655434..5655700 | 232..498 | 100 | -> | Plus |
3R | 5655761..5656336 | 499..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5655145..5655375 | 1..231 | 100 | -> | Plus |
3R | 5655434..5655700 | 232..498 | 100 | -> | Plus |
3R | 5655761..5656336 | 499..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5655145..5655375 | 1..231 | 100 | -> | Plus |
3R | 5655434..5655700 | 232..498 | 100 | -> | Plus |
3R | 5655761..5656336 | 499..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 1480867..1481097 | 1..231 | 100 | -> | Plus |
arm_3R | 1481156..1481422 | 232..498 | 100 | -> | Plus |
arm_3R | 1481483..1482058 | 499..1074 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 5395976..5396206 | 1..231 | 100 | -> | Plus |
3R | 5396265..5396531 | 232..498 | 100 | -> | Plus |
3R | 5396592..5397167 | 499..1074 | 100 | Plus |
Translation from 61 to 942
> RE51713.pep MDKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFA AINSQIREVEQLINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSY KWMDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFSSFNNDPDHIDK LLSEINTPPHTSYRIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVK GFDEPLEHDDLWAESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITW LNSHVKLFLEPCKRCGKFVVNGLPPTWRDLRTLEPFHEDCRNC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17578-PA | 293 | GF17578-PA | 1..293 | 1..293 | 1476 | 91.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG12980-PA | 293 | GG12980-PA | 1..293 | 1..293 | 1535 | 95.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18376-PA | 293 | GH18376-PA | 1..292 | 1..292 | 1441 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED27-PA | 293 | CG1245-PA | 1..293 | 1..293 | 1575 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23367-PA | 293 | GI23367-PA | 1..292 | 1..292 | 1422 | 86.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL24390-PA | 293 | GL24390-PA | 1..293 | 1..293 | 1472 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA26598-PA | 293 | GA26598-PA | 1..293 | 1..293 | 1472 | 91.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10829-PA | 293 | GM10829-PA | 1..293 | 1..293 | 1566 | 98.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19807-PA | 293 | GD19807-PA | 1..293 | 1..293 | 1570 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10362-PA | 293 | GJ10362-PA | 1..292 | 1..292 | 1442 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22404-PA | 293 | GK22404-PA | 1..293 | 1..293 | 1441 | 88.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10152-PA | 293 | GE10152-PA | 1..293 | 1..293 | 1532 | 95.6 | Plus |
Translation from 61 to 942
> RE51713.hyp MDKLNSTLTAVKNLRSNVRLCFEHLADGTDGESGEESRNKFVNDFQERFA AINSQIREVEQLINGLPVPPTPYSLGNTAYLAQETSQDRQALYPQLVNSY KWMDKVHDHSFLAFNNLNQNTLRRSYNYCSQKRQRLPFSSFNNDPDHIDK LLSEINTPPHTSYRIFRPFGTNAVTIVTISNVMKAAIVFKGVLIEWVTVK GFDEPLEHDDLWAESRYEVFRKVQDHAHSAMLHFFSPTLPDLAVKSYITW LNSHVKLFLEPCKRCGKFVVNGLPPTWRDLRTLEPFHEDCRNC*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
MED27-PA | 293 | CG1245-PA | 1..293 | 1..293 | 1575 | 100 | Plus |