BDGP Sequence Production Resources |
Search the DGRC for RE51928
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 519 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bip1-RB |
Protein status: | RE51928.pep: gold |
Sequenced Size: | 1482 |
Gene | Date | Evidence |
---|---|---|
bip1 | 2009-06-01 | Manual selection by Joe Carlson |
1482 bp assembled on 2009-08-05
GenBank Submission: BT089045.1
> RE51928.complete ATTATACAAAGAACTGCGCAACCGATCGCAACTAGCTCGTGGACTCTTGT TCTCCCAATAATTGCTGCAATCATTGGCTGCGTCACTTTGGCGTCAGCTA TAAACTGGTGGATCAACTCGGCGGCCTCCAAAAGCTGCGCATCTGCTCCA GACACTTTAGCCAACGCCAGGAGATGGCCAAAACCCGCATCAAGATGACG CCGCTGCGCAAGTCCTCGTCCTCCAAGGGCATTGTGCTACCCATTAATGC CGCTGGAGGGTCGGTCATTGCAGGCGCCTTAGCAGGAGGAGGAGGTGCAG GAACTGGGAGCGGTGCTGTCAAGTCGGCGGTGGCCAGCAGCACCACCATT GAACTTGTTGAGAGCCCCAATAGACATCAGGCCAAGAAGCCCAACACCGG CATTATGCCCATGCCACAGCGTTCCCACTCCATTAGCTCCTCGGCCTCCA GCGATGTGCTGTCCATAAACTCCGACTACGAAGCCTCGTTACCACTATCA GCCTTAGAGGATTCCCAGAATGGACTGAACCGCTTGGAGAACGGTCAAGC CAAGAAGAGGAAACTGTACGTGATCACCGAAAAATCGGATGAGACGAAAG GTCAGACTCTGGAGACAAATGGACAGCCCAAGAAGCGTAAGATGTTCGTG GTTGTGGAGCAGGATAAAGATGTGGCGGGCAAGAAACTAATGATTATGGC CGACAAGCCGCAGACCAATCTTACCCAGCATTTGGAGAAACTACTGCCCG AGCTATTGAATCGCATACAGGACAAAGAACAGAAGCAGATCAAACCAGCT CCAGTGGTGACTAAAGCCAAGCCGGTGGTTAACAATCCCAGACCACATAT AACATTGCCGCCCAAAAAGAATCCAACTAATTTTGCAAAGATCACGTCCA CACCAAGCTCAGTGCCTTCATCCATTCAGATGCCACTGCCAATTCAGAAT ACCAAGATCCTAAAGTCCGAGAATTCGGAACTGACAATGAATTCGGATGA GATCGAGACGAACATAAATCTATCGCCCGACTTCCGCTTCCTAATGAAAA TCCTACCCAAATTGGAACAGCTGCCCGAGCCCCACAAGCAGAACGTGAAG CGTTCCATCCAGATCTTCGTGGAGAAGAGCTACAGTATTTACGGCAACAA GGATTAGTTATCAGTATTTTCGGGCACAGCGTTTATTTTCCATTTCATGT GAAGCAGTTCCCTTTATTTTCGTACATACACATACATACATCAAAGGCAT TTCATAACTTTGTGTAAGACTGAAGCAGAACCAATTTAATTTTTAAGCCA ATTGTAAGAGCTGAAGCAGCTCCCCATTTAGACATGTAAGCTTATCAGAA ATTTGATATTACCCACCTGGAGATGGGTAGATTTTGTAAAAGTTGAGCCA TAAAAACGAATTAAGATTGAATTTCTTTCTATATTGAATATATGAAAGCT TGATTTAAGCCAGAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 8046398..8047504 | 1467..361 | 5415 | 99.3 | Minus |
chr3L | 24539361 | chr3L | 8047938..8048236 | 362..64 | 1495 | 100 | Minus |
chr3L | 24539361 | chr3L | 8048371..8048434 | 64..1 | 305 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 8047430..8048541 | 1472..361 | 5530 | 99.8 | Minus |
3L | 28103327 | 3L | 8048976..8049274 | 362..64 | 1495 | 100 | Minus |
3L | 28103327 | 3L | 8049409..8049472 | 64..1 | 305 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
pogo | 2121 | pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). | 307..394 | 1283..1195 | 118 | 60.7 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 8046398..8047502 | 363..1467 | 99 | <- | Minus |
chr3L | 8047938..8048235 | 65..362 | 100 | <- | Minus |
chr3L | 8048371..8048434 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RA | 164..1260 | 61..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RA | 164..1260 | 61..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RA | 164..1260 | 61..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RA | 164..1260 | 61..1157 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RA | 415..1821 | 61..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RB | 1..1467 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RB | 4..1470 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bip1-RB | 4..1470 | 1..1467 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8054335..8055439 | 363..1467 | 99 | <- | Minus |
3L | 8055876..8056173 | 65..362 | 100 | <- | Minus |
3L | 8056309..8056372 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8054335..8055439 | 363..1467 | 99 | <- | Minus |
3L | 8055876..8056173 | 65..362 | 100 | <- | Minus |
3L | 8056309..8056372 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8054335..8055439 | 363..1467 | 99 | <- | Minus |
3L | 8055876..8056173 | 65..362 | 100 | <- | Minus |
3L | 8056309..8056372 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 8047435..8048539 | 363..1467 | 99 | <- | Minus |
arm_3L | 8048976..8049273 | 65..362 | 100 | <- | Minus |
arm_3L | 8049409..8049472 | 1..64 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 8047435..8048539 | 363..1467 | 99 | <- | Minus |
3L | 8048976..8049273 | 65..362 | 100 | <- | Minus |
3L | 8049409..8049472 | 1..64 | 98 | Minus |
Translation from 173 to 1156
> RE51928.hyp MAKTRIKMTPLRKSSSSKGIVLPINAAGGSVIAGALAGGGGAGTGSGAVK SAVASSTTIELVESPNRHQAKKPNTGIMPMPQRSHSISSSASSDVLSINS DYEASLPLSALEDSQNGLNRLENGQAKKRKLYVITEKSDETKGQTLETNG QPKKRKMFVVVEQDKDVAGKKLMIMADKPQTNLTQHLEKLLPELLNRIQD KEQKQIKPAPVVTKAKPVVNNPRPHITLPPKKNPTNFAKITSTPSSVPSS IQMPLPIQNTKILKSENSELTMNSDEIETNINLSPDFRFLMKILPKLEQL PEPHKQNVKRSIQIFVEKSYSIYGNKD*
Translation from 173 to 1156
> RE51928.pep MAKTRIKMTPLRKSSSSKGIVLPINAAGGSVIAGALAGGGGAGTGSGAVK SAVASSTTIELVESPNRHQAKKPNTGIMPMPQRSHSISSSASSDVLSINS DYEASLPLSALEDSQNGLNRLENGQAKKRKLYVITEKSDETKGQTLETNG QPKKRKMFVVVEQDKDVAGKKLMIMADKPQTNLTQHLEKLLPELLNRIQD KEQKQIKPAPVVTKAKPVVNNPRPHITLPPKKNPTNFAKITSTPSSVPSS IQMPLPIQNTKILKSENSELTMNSDEIETNINLSPDFRFLMKILPKLEQL PEPHKQNVKRSIQIFVEKSYSIYGNKD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10629-PA | 443 | GF10629-PA | 128..443 | 1..327 | 968 | 68.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14925-PA | 426 | GG14925-PA | 93..426 | 1..327 | 1368 | 88.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16504-PA | 617 | GH16504-PA | 255..617 | 1..327 | 598 | 47.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bip1-PB | 327 | CG7574-PB | 1..327 | 1..327 | 1641 | 100 | Plus |
bip1-PA | 419 | CG7574-PA | 93..419 | 1..327 | 1641 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12181-PA | 393 | GI12181-PA | 87..393 | 1..327 | 716 | 55.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25458-PA | 421 | GL25458-PA | 89..419 | 1..327 | 882 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20449-PA | 416 | GA20449-PA | 84..414 | 1..327 | 875 | 63.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24976-PA | 419 | GM24976-PA | 93..419 | 1..327 | 1645 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13025-PA | 419 | GD13025-PA | 93..419 | 1..327 | 1651 | 97.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11417-PA | 426 | GJ11417-PA | 92..426 | 1..327 | 668 | 52.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20310-PA | 459 | GK20310-PA | 85..459 | 1..327 | 532 | 47.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20378-PA | 426 | GE20378-PA | 90..426 | 1..327 | 1328 | 87.8 | Plus |