Clone RE51928 Report

Search the DGRC for RE51928

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:519
Well:28
Vector:pFlc-1
Associated Gene/Transcriptbip1-RB
Protein status:RE51928.pep: gold
Sequenced Size:1482

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
bip1 2009-06-01 Manual selection by Joe Carlson

Clone Sequence Records

RE51928.complete Sequence

1482 bp assembled on 2009-08-05

GenBank Submission: BT089045.1

> RE51928.complete
ATTATACAAAGAACTGCGCAACCGATCGCAACTAGCTCGTGGACTCTTGT
TCTCCCAATAATTGCTGCAATCATTGGCTGCGTCACTTTGGCGTCAGCTA
TAAACTGGTGGATCAACTCGGCGGCCTCCAAAAGCTGCGCATCTGCTCCA
GACACTTTAGCCAACGCCAGGAGATGGCCAAAACCCGCATCAAGATGACG
CCGCTGCGCAAGTCCTCGTCCTCCAAGGGCATTGTGCTACCCATTAATGC
CGCTGGAGGGTCGGTCATTGCAGGCGCCTTAGCAGGAGGAGGAGGTGCAG
GAACTGGGAGCGGTGCTGTCAAGTCGGCGGTGGCCAGCAGCACCACCATT
GAACTTGTTGAGAGCCCCAATAGACATCAGGCCAAGAAGCCCAACACCGG
CATTATGCCCATGCCACAGCGTTCCCACTCCATTAGCTCCTCGGCCTCCA
GCGATGTGCTGTCCATAAACTCCGACTACGAAGCCTCGTTACCACTATCA
GCCTTAGAGGATTCCCAGAATGGACTGAACCGCTTGGAGAACGGTCAAGC
CAAGAAGAGGAAACTGTACGTGATCACCGAAAAATCGGATGAGACGAAAG
GTCAGACTCTGGAGACAAATGGACAGCCCAAGAAGCGTAAGATGTTCGTG
GTTGTGGAGCAGGATAAAGATGTGGCGGGCAAGAAACTAATGATTATGGC
CGACAAGCCGCAGACCAATCTTACCCAGCATTTGGAGAAACTACTGCCCG
AGCTATTGAATCGCATACAGGACAAAGAACAGAAGCAGATCAAACCAGCT
CCAGTGGTGACTAAAGCCAAGCCGGTGGTTAACAATCCCAGACCACATAT
AACATTGCCGCCCAAAAAGAATCCAACTAATTTTGCAAAGATCACGTCCA
CACCAAGCTCAGTGCCTTCATCCATTCAGATGCCACTGCCAATTCAGAAT
ACCAAGATCCTAAAGTCCGAGAATTCGGAACTGACAATGAATTCGGATGA
GATCGAGACGAACATAAATCTATCGCCCGACTTCCGCTTCCTAATGAAAA
TCCTACCCAAATTGGAACAGCTGCCCGAGCCCCACAAGCAGAACGTGAAG
CGTTCCATCCAGATCTTCGTGGAGAAGAGCTACAGTATTTACGGCAACAA
GGATTAGTTATCAGTATTTTCGGGCACAGCGTTTATTTTCCATTTCATGT
GAAGCAGTTCCCTTTATTTTCGTACATACACATACATACATCAAAGGCAT
TTCATAACTTTGTGTAAGACTGAAGCAGAACCAATTTAATTTTTAAGCCA
ATTGTAAGAGCTGAAGCAGCTCCCCATTTAGACATGTAAGCTTATCAGAA
ATTTGATATTACCCACCTGGAGATGGGTAGATTTTGTAAAAGTTGAGCCA
TAAAAACGAATTAAGATTGAATTTCTTTCTATATTGAATATATGAAAGCT
TGATTTAAGCCAGAAAGAAAAAAAAAAAAAAA

RE51928.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:29:12
Subject Length Description Subject Range Query Range Score Percent Strand
bip1-RB 1532 bip1-RB 63..1530 1..1468 7310 99.8 Plus
bip1-RA 1885 bip1-RA 479..1883 64..1468 7010 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 04:07:45
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 8046398..8047504 1467..361 5415 99.3 Minus
chr3L 24539361 chr3L 8047938..8048236 362..64 1495 100 Minus
chr3L 24539361 chr3L 8048371..8048434 64..1 305 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:06 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 04:07:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8054330..8055441 1472..361 5530 99.8 Minus
3L 28110227 3L 8055876..8056174 362..64 1495 100 Minus
3L 28110227 3L 8056309..8056372 64..1 305 98.4 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:24:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 8047430..8048541 1472..361 5530 99.8 Minus
3L 28103327 3L 8048976..8049274 362..64 1495 100 Minus
3L 28103327 3L 8049409..8049472 64..1 305 98.4 Minus
Blast to na_te.dros performed 2019-03-16 04:07:44
Subject Length Description Subject Range Query Range Score Percent Strand
pogo 2121 pogo DMPOGOR11 2121bp AKA(S90749) Derived from X59837 (g8354) (Rel. 45, Last updated, Version 10). 307..394 1283..1195 118 60.7 Minus

RE51928.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 04:08:36 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 8046398..8047502 363..1467 99 <- Minus
chr3L 8047938..8048235 65..362 100 <- Minus
chr3L 8048371..8048434 1..64 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:12:54 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RA 164..1260 61..1157 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:56:40 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RA 164..1260 61..1157 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:17:47 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RA 164..1260 61..1157 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:27:49 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RA 164..1260 61..1157 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-08-05 17:08:19 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RA 415..1821 61..1467 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:56:40 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RB 1..1467 1..1467 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:17:47 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RB 4..1470 1..1467 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:27:49 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
bip1-RB 4..1470 1..1467 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:36 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8054335..8055439 363..1467 99 <- Minus
3L 8055876..8056173 65..362 100 <- Minus
3L 8056309..8056372 1..64 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:36 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8054335..8055439 363..1467 99 <- Minus
3L 8055876..8056173 65..362 100 <- Minus
3L 8056309..8056372 1..64 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 04:08:36 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8054335..8055439 363..1467 99 <- Minus
3L 8055876..8056173 65..362 100 <- Minus
3L 8056309..8056372 1..64 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:17:47 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8047435..8048539 363..1467 99 <- Minus
arm_3L 8048976..8049273 65..362 100 <- Minus
arm_3L 8049409..8049472 1..64 98   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:48:11 Download gff for RE51928.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8047435..8048539 363..1467 99 <- Minus
3L 8048976..8049273 65..362 100 <- Minus
3L 8049409..8049472 1..64 98   Minus

RE51928.hyp Sequence

Translation from 173 to 1156

> RE51928.hyp
MAKTRIKMTPLRKSSSSKGIVLPINAAGGSVIAGALAGGGGAGTGSGAVK
SAVASSTTIELVESPNRHQAKKPNTGIMPMPQRSHSISSSASSDVLSINS
DYEASLPLSALEDSQNGLNRLENGQAKKRKLYVITEKSDETKGQTLETNG
QPKKRKMFVVVEQDKDVAGKKLMIMADKPQTNLTQHLEKLLPELLNRIQD
KEQKQIKPAPVVTKAKPVVNNPRPHITLPPKKNPTNFAKITSTPSSVPSS
IQMPLPIQNTKILKSENSELTMNSDEIETNINLSPDFRFLMKILPKLEQL
PEPHKQNVKRSIQIFVEKSYSIYGNKD*

RE51928.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:02:00
Subject Length Description Subject Range Query Range Score Percent Strand
bip1-PB 327 CG7574-PB 1..327 1..327 1641 100 Plus
bip1-PA 419 CG7574-PA 93..419 1..327 1641 100 Plus

RE51928.pep Sequence

Translation from 173 to 1156

> RE51928.pep
MAKTRIKMTPLRKSSSSKGIVLPINAAGGSVIAGALAGGGGAGTGSGAVK
SAVASSTTIELVESPNRHQAKKPNTGIMPMPQRSHSISSSASSDVLSINS
DYEASLPLSALEDSQNGLNRLENGQAKKRKLYVITEKSDETKGQTLETNG
QPKKRKMFVVVEQDKDVAGKKLMIMADKPQTNLTQHLEKLLPELLNRIQD
KEQKQIKPAPVVTKAKPVVNNPRPHITLPPKKNPTNFAKITSTPSSVPSS
IQMPLPIQNTKILKSENSELTMNSDEIETNINLSPDFRFLMKILPKLEQL
PEPHKQNVKRSIQIFVEKSYSIYGNKD*

RE51928.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 16:35:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF10629-PA 443 GF10629-PA 128..443 1..327 968 68.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 16:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14925-PA 426 GG14925-PA 93..426 1..327 1368 88.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 16:35:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16504-PA 617 GH16504-PA 255..617 1..327 598 47.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:25:03
Subject Length Description Subject Range Query Range Score Percent Strand
bip1-PB 327 CG7574-PB 1..327 1..327 1641 100 Plus
bip1-PA 419 CG7574-PA 93..419 1..327 1641 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 16:35:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12181-PA 393 GI12181-PA 87..393 1..327 716 55.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 16:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL25458-PA 421 GL25458-PA 89..419 1..327 882 63.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 16:35:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA20449-PA 416 GA20449-PA 84..414 1..327 875 63.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 16:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24976-PA 419 GM24976-PA 93..419 1..327 1645 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 16:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13025-PA 419 GD13025-PA 93..419 1..327 1651 97.6 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 16:35:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11417-PA 426 GJ11417-PA 92..426 1..327 668 52.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 16:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK20310-PA 459 GK20310-PA 85..459 1..327 532 47.4 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 16:35:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20378-PA 426 GE20378-PA 90..426 1..327 1328 87.8 Plus