Clone RE52028 Report

Search the DGRC for RE52028

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:520
Well:28
Vector:pFlc-1
Associated Gene/TranscriptSnx3-RA
Protein status:RE52028.pep: gold
Preliminary Size:1390
Sequenced Size:1438

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6359 2001-12-14 Blastp of sequenced clone
CG6359 2002-01-01 Sim4 clustering to Release 2
CG6359 2003-01-01 Sim4 clustering to Release 3
CG6359 2008-04-29 Release 5.5 accounting
CG6359 2008-08-15 Release 5.9 accounting
CG6359 2008-12-18 5.12 accounting

Clone Sequence Records

RE52028.complete Sequence

1438 bp (1438 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071431

> RE52028.complete
GGACCCCTACTGTTAACTCACACAGCACAGTTCTGTTAATTATTGGAAAG
TTTTTTAATGGAACAAATTTAATTAAATTACAAAAGTTGTTTACCCGCTG
CGGCACTTGGACACCCAGAAAGTAAAACAAAGCAGTGCTCGGGGACAGCA
ATTGAATAGTACCAGAATCCGGGACATCGGAGGCAGCGAGCCGCGACAAA
GAAGTGCACAAAGAGAGATAGCCAGTGCAAAACCCGTTTCTTCCAACCGA
TAAAAGGGGCGTCTATAGCTCTGCCGATCCGGAGCCCCTGGCATTGCACC
ACTATGATGGTTGAGTCCGATGGAACCGCCGACGCCACCCGCCGCCTAAA
CGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTGCCCGCCAACTTCC
TGGAGATCGACGTGGTCAATCCGCTGACCACCATGGCGGCGGGCAAGAAG
CGCTACACGGACTACGAGGTCCGGATGCGGACCAATCTGCCCGTCTTTAA
GGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGACTTTGAGTGGCTGC
GAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCCACCACTCCCAGGA
AAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACGAGGGCATCTTTGA
CGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAGGCCTTCATCAACA
AGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTGCCTGCATATGTTC
CTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCGGCAAGATTCGGAA
CACATAAGCAGCTTAGTCCGGCGCAATCGAAACCCCCTAACCATAGCAAT
GCAATGAAGCAAAAACTCGAACGAACAAACCTGCTACGAAATCTTTATGG
GAAGCCGTGTGAATGTGTGTGCTTGCCCGGATTGGAGGAGGATGGAGCAG
ATGAGCGATGATGTAGGTTGGTGGAGAAGGGATCTGTTATGCGACGCGAT
ACGAGGCGGGAGGTGCTGCTGCTCAGTTAATGTTGAGCCCCTCTCAGCCC
CCGGGGATTAGTTAAAAACCAGCATTGGGAATTTTTAATGCTAAATTCAA
GTTTATATGGTATACATAACAATATACATACACATATATATATATTATAC
ACAATACACATATTTACGAATAGTGTACATAAGACATGCCTACTACGCCC
TCGCTAAATGAGTCTCGAAAGTAGGAGCTGCCCCTCCCATTTTCCCGATC
CTCAGTTTCTTCGTTTTGAACCATTGCAGCGGTAATGAAGCAGCAAATAA
AATAAGGGAGCCATCCTGACCCCAAAATCGATCCCTTGTAAGTGTATGCA
AATTATTGAATATTTTGAAACAGTTTAGTGAATAATATTGTACTTCGAAT
CAAATTAAAATAATTCAAAAACAAAAAAAAAAAAAAAA

RE52028.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG6359-RA 1658 CG6359-RA 71..1489 3..1421 7080 99.9 Plus
CG6359.c 1873 CG6359.c 26..1444 3..1421 7080 99.9 Plus
CG6359.a 1494 CG6359.a 26..1132 3..1109 5520 99.9 Plus
CG6359.a 1494 CG6359.a 1132..1380 1173..1421 1245 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:37:15
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 8454481..8455327 575..1421 4175 99.5 Plus
chr3R 27901430 chr3R 8453304..8453781 3..480 2390 100 Plus
chr3R 27901430 chr3R 8454149..8454245 480..576 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:15 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12629220..12630066 575..1421 4220 99.9 Plus
3R 32079331 3R 12628043..12628520 3..480 2390 100 Plus
3R 32079331 3R 12628888..12628984 480..576 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 12370051..12370897 575..1421 4220 99.8 Plus
3R 31820162 3R 12368874..12369351 3..480 2390 100 Plus
3R 31820162 3R 12369719..12369815 480..576 485 100 Plus
Blast to na_te.dros performed on 2019-03-16 03:37:13 has no hits.

RE52028.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:37:55 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 8453302..8453781 1..480 99 -> Plus
chr3R 8454150..8454245 481..576 100 -> Plus
chr3R 8454483..8455016 577..1110 99 == Plus
chr3R 8455069..8455327 1163..1422 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:21:31 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 1..504 304..807 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:11 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 1..504 304..807 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:24 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 1..504 304..807 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:20 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 1..504 304..807 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:14 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RA 1..504 304..807 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:39:56 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 3..1421 3..1422 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:11 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 3..1416 3..1416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:24 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RB 11..1431 1..1422 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:20 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
CG6359-RA 3..1421 3..1422 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:14 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
Snx3-RB 11..1431 1..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:55 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12628041..12628520 1..480 99 -> Plus
3R 12628889..12628984 481..576 100 -> Plus
3R 12629222..12630066 577..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:55 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12628041..12628520 1..480 99 -> Plus
3R 12628889..12628984 481..576 100 -> Plus
3R 12629222..12630066 577..1422 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:37:55 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12628041..12628520 1..480 99 -> Plus
3R 12628889..12628984 481..576 100 -> Plus
3R 12629222..12630066 577..1422 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:24 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8453763..8454242 1..480 99 -> Plus
arm_3R 8454611..8454706 481..576 100 -> Plus
arm_3R 8454944..8455788 577..1422 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:11:33 Download gff for RE52028.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12368872..12369351 1..480 99 -> Plus
3R 12369720..12369815 481..576 100 -> Plus
3R 12370053..12370897 577..1422 99   Plus

RE52028.pep Sequence

Translation from 303 to 806

> RE52028.pep
MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR
YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK
AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL
QENVIDKNYVPGKIRNT*

RE52028.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17109-PA 167 GF17109-PA 1..167 1..167 891 100 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19071-PA 167 GG19071-PA 1..167 1..167 891 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH18701-PA 167 GH18701-PA 1..167 1..167 871 97 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:58
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-PB 167 CG6359-PB 1..167 1..167 872 100 Plus
Snx3-PA 167 CG6359-PA 1..167 1..167 872 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI22847-PA 167 GI22847-PA 1..167 1..167 884 98.8 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:11:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL13919-PA 167 GL13919-PA 1..167 1..167 891 100 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19538-PA 167 GA19538-PA 1..167 1..167 891 100 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:11:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24045-PA 167 GM24045-PA 1..167 1..167 891 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD18845-PA 167 GD18845-PA 1..167 1..167 891 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ14149-PA 167 GJ14149-PA 1..167 1..167 884 98.8 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13720-PA 166 GK13720-PA 1..166 1..167 869 98.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:11:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26205-PA 167 GE26205-PA 1..167 1..167 891 100 Plus

RE52028.hyp Sequence

Translation from 303 to 806

> RE52028.hyp
MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR
YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK
AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL
QENVIDKNYVPGKIRNT*

RE52028.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
Snx3-PB 167 CG6359-PB 1..167 1..167 872 100 Plus
Snx3-PA 167 CG6359-PA 1..167 1..167 872 100 Plus