BDGP Sequence Production Resources |
Search the DGRC for RE52028
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 520 |
Well: | 28 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Snx3-RA |
Protein status: | RE52028.pep: gold |
Preliminary Size: | 1390 |
Sequenced Size: | 1438 |
Gene | Date | Evidence |
---|---|---|
CG6359 | 2001-12-14 | Blastp of sequenced clone |
CG6359 | 2002-01-01 | Sim4 clustering to Release 2 |
CG6359 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6359 | 2008-04-29 | Release 5.5 accounting |
CG6359 | 2008-08-15 | Release 5.9 accounting |
CG6359 | 2008-12-18 | 5.12 accounting |
1438 bp (1438 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071431
> RE52028.complete GGACCCCTACTGTTAACTCACACAGCACAGTTCTGTTAATTATTGGAAAG TTTTTTAATGGAACAAATTTAATTAAATTACAAAAGTTGTTTACCCGCTG CGGCACTTGGACACCCAGAAAGTAAAACAAAGCAGTGCTCGGGGACAGCA ATTGAATAGTACCAGAATCCGGGACATCGGAGGCAGCGAGCCGCGACAAA GAAGTGCACAAAGAGAGATAGCCAGTGCAAAACCCGTTTCTTCCAACCGA TAAAAGGGGCGTCTATAGCTCTGCCGATCCGGAGCCCCTGGCATTGCACC ACTATGATGGTTGAGTCCGATGGAACCGCCGACGCCACCCGCCGCCTAAA CGTGAAGAAGCAAACACTGGACGATGCGTACGCCGTGCCCGCCAACTTCC TGGAGATCGACGTGGTCAATCCGCTGACCACCATGGCGGCGGGCAAGAAG CGCTACACGGACTACGAGGTCCGGATGCGGACCAATCTGCCCGTCTTTAA GGTAAAGGAGTCCAGTGTCAGGCGACGCTACAGCGACTTTGAGTGGCTGC GAAACGAGCTGGAGCGGGATAGCAAGATTGTGGTGCCACCACTCCCAGGA AAGGCATGGAAGCGGCAGATGCCCTTCCGCGGCGACGAGGGCATCTTTGA CGAAAGCTTCATCGAGGAGCGGCGCAAGGGACTGGAGGCCTTCATCAACA AGATAGCCGGACATCCGCTGGCGCAGAACGAGCGCTGCCTGCATATGTTC CTGCAGGAGAATGTCATAGATAAGAACTACGTGCCCGGCAAGATTCGGAA CACATAAGCAGCTTAGTCCGGCGCAATCGAAACCCCCTAACCATAGCAAT GCAATGAAGCAAAAACTCGAACGAACAAACCTGCTACGAAATCTTTATGG GAAGCCGTGTGAATGTGTGTGCTTGCCCGGATTGGAGGAGGATGGAGCAG ATGAGCGATGATGTAGGTTGGTGGAGAAGGGATCTGTTATGCGACGCGAT ACGAGGCGGGAGGTGCTGCTGCTCAGTTAATGTTGAGCCCCTCTCAGCCC CCGGGGATTAGTTAAAAACCAGCATTGGGAATTTTTAATGCTAAATTCAA GTTTATATGGTATACATAACAATATACATACACATATATATATATTATAC ACAATACACATATTTACGAATAGTGTACATAAGACATGCCTACTACGCCC TCGCTAAATGAGTCTCGAAAGTAGGAGCTGCCCCTCCCATTTTCCCGATC CTCAGTTTCTTCGTTTTGAACCATTGCAGCGGTAATGAAGCAGCAAATAA AATAAGGGAGCCATCCTGACCCCAAAATCGATCCCTTGTAAGTGTATGCA AATTATTGAATATTTTGAAACAGTTTAGTGAATAATATTGTACTTCGAAT CAAATTAAAATAATTCAAAAACAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6359-RA | 1658 | CG6359-RA | 71..1489 | 3..1421 | 7080 | 99.9 | Plus |
CG6359.c | 1873 | CG6359.c | 26..1444 | 3..1421 | 7080 | 99.9 | Plus |
CG6359.a | 1494 | CG6359.a | 26..1132 | 3..1109 | 5520 | 99.9 | Plus |
CG6359.a | 1494 | CG6359.a | 1132..1380 | 1173..1421 | 1245 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 8454481..8455327 | 575..1421 | 4175 | 99.5 | Plus |
chr3R | 27901430 | chr3R | 8453304..8453781 | 3..480 | 2390 | 100 | Plus |
chr3R | 27901430 | chr3R | 8454149..8454245 | 480..576 | 485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 12629220..12630066 | 575..1421 | 4220 | 99.9 | Plus |
3R | 32079331 | 3R | 12628043..12628520 | 3..480 | 2390 | 100 | Plus |
3R | 32079331 | 3R | 12628888..12628984 | 480..576 | 485 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 12370051..12370897 | 575..1421 | 4220 | 99.8 | Plus |
3R | 31820162 | 3R | 12368874..12369351 | 3..480 | 2390 | 100 | Plus |
3R | 31820162 | 3R | 12369719..12369815 | 480..576 | 485 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 8453302..8453781 | 1..480 | 99 | -> | Plus |
chr3R | 8454150..8454245 | 481..576 | 100 | -> | Plus |
chr3R | 8454483..8455016 | 577..1110 | 99 | == | Plus |
chr3R | 8455069..8455327 | 1163..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 1..504 | 304..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 1..504 | 304..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx3-RA | 1..504 | 304..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 1..504 | 304..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx3-RA | 1..504 | 304..807 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 3..1421 | 3..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 3..1416 | 3..1416 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx3-RB | 11..1431 | 1..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6359-RA | 3..1421 | 3..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Snx3-RB | 11..1431 | 1..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12628041..12628520 | 1..480 | 99 | -> | Plus |
3R | 12628889..12628984 | 481..576 | 100 | -> | Plus |
3R | 12629222..12630066 | 577..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12628041..12628520 | 1..480 | 99 | -> | Plus |
3R | 12628889..12628984 | 481..576 | 100 | -> | Plus |
3R | 12629222..12630066 | 577..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12628041..12628520 | 1..480 | 99 | -> | Plus |
3R | 12628889..12628984 | 481..576 | 100 | -> | Plus |
3R | 12629222..12630066 | 577..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 8453763..8454242 | 1..480 | 99 | -> | Plus |
arm_3R | 8454611..8454706 | 481..576 | 100 | -> | Plus |
arm_3R | 8454944..8455788 | 577..1422 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 12368872..12369351 | 1..480 | 99 | -> | Plus |
3R | 12369720..12369815 | 481..576 | 100 | -> | Plus |
3R | 12370053..12370897 | 577..1422 | 99 | Plus |
Translation from 303 to 806
> RE52028.pep MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL QENVIDKNYVPGKIRNT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17109-PA | 167 | GF17109-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19071-PA | 167 | GG19071-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18701-PA | 167 | GH18701-PA | 1..167 | 1..167 | 871 | 97 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Snx3-PB | 167 | CG6359-PB | 1..167 | 1..167 | 872 | 100 | Plus |
Snx3-PA | 167 | CG6359-PA | 1..167 | 1..167 | 872 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI22847-PA | 167 | GI22847-PA | 1..167 | 1..167 | 884 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL13919-PA | 167 | GL13919-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19538-PA | 167 | GA19538-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24045-PA | 167 | GM24045-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD18845-PA | 167 | GD18845-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14149-PA | 167 | GJ14149-PA | 1..167 | 1..167 | 884 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13720-PA | 166 | GK13720-PA | 1..166 | 1..167 | 869 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26205-PA | 167 | GE26205-PA | 1..167 | 1..167 | 891 | 100 | Plus |
Translation from 303 to 806
> RE52028.hyp MMVESDGTADATRRLNVKKQTLDDAYAVPANFLEIDVVNPLTTMAAGKKR YTDYEVRMRTNLPVFKVKESSVRRRYSDFEWLRNELERDSKIVVPPLPGK AWKRQMPFRGDEGIFDESFIEERRKGLEAFINKIAGHPLAQNERCLHMFL QENVIDKNYVPGKIRNT*