BDGP Sequence Production Resources |
Search the DGRC for RE52048
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 520 |
Well: | 48 |
Vector: | pFlc-1 |
Associated Gene/Transcript | tap-RA |
Protein status: | RE52048.pep: gold |
Preliminary Size: | 2161 |
Sequenced Size: | 2141 |
Gene | Date | Evidence |
---|---|---|
CG7659 | 2002-01-01 | Sim4 clustering to Release 2 |
CG7659 | 2002-05-18 | Blastp of sequenced clone |
CG7659 | 2003-01-01 | Sim4 clustering to Release 3 |
tap | 2008-04-29 | Release 5.5 accounting |
tap | 2008-08-15 | Release 5.9 accounting |
tap | 2008-12-18 | 5.12 accounting |
2141 bp (2141 high quality bases) assembled on 2002-05-18
GenBank Submission: AY119146
> RE52048.complete TAGTTGGTGCGGGCACGCGAGACGCGAAGAAACAACTCTCTCAAAGCGGA AATCGTAAATCGGAAATGTGCTAAAGGATATACACACCGTGATACAGATA CGAGATCATGGCCGCCTGCTACAATGCCTATAGCGCTGGATCACAGTCCT TCGAGTTCGACGAGGACGACGACGACGCCTCCTTCGACAGTGGCTACGAG AAGAGTTTCGAGACGGAGGCCCAGTTGAGCTCACGACGCCGCTTGGACTT TGGCACTCCGCCGACTCCGGCGATCCCGCAACCGTACTCCGGCGGCACCT GGGACGCCGTACCGCTCAGCTCACCGCCGGCGGGCTTCGTGGGATTGCTC GATACGAGCAGCAATCACAGCACTCGGAGCGGCAGGACACTGGTCGAACA TCTGAACAGTCGGGCCACGAATGGCGTCTTCGATCCGCCATTGACCAGTA CGCCGGTGAAGTCGCCAGAGGATCCCAATGCGCCGCGACCGAAACGCAAA TATGCCGTCGGCAAGAACAGAGTAACTCGCTCGCGCAGTCCAACCCAAGT GGTGAAGATCAAGCGTTTCCGCCGCATGAAGGCCAATGACCGGGAGCGGA ATCGGATGCATAACTTGAATGATGCCCTGGAGAAACTACGCGTCACTCTG CCCTCGCTTCCCGAGGAGACGAAGCTGACGAAGATCGAGATTCTGCGATT TGCGCACAACTACATCTTTGCCCTGGAGCAGGTGCTGGAAAGCGGAGGTT CAATCAACCTGGATCTGGAGAAGCTGCAGAACTTCACGCTGAGTGGTGAG AGGATTACCAAGGAGCTCTTCGATGCTCTTTTCGTGAATCCACAGCCGTA TCCCTTGTTCGGACGAATGTTCCCCTATGGACAGGGAATGGCGCCTCTTG CACAGCACCAGACTGCTCCAGCATCGCACGCGGAGCAGCCGCCGGCGATG GGTGGCTTTCAGCACGGCATGGACTATCCGCAGCAGCCACCAGGATTCGA CTTTACAGGCAGCATGCGGTTTTACCACCAACAGCAACAGCAGCCGCATC AGCCTCACCATCTGCAGCCTAATCCCCAGCAGGAGTCCAGCCCGCAGCAG TTCTCGCAGGAGAAATACGATCTGTTCAGGGGATCCTTCGATGCAGCTGC CAATCTTCATTCTACGAACTTGGATTCTGGGATTCACCAGCAGAGCAGCT TCTACTCGCAAACACCGCCATGGAAGGACTATCCGGAGGATCAGGCACAC GTGCATCCCGTTCCACATCAACACAGCTACAAAAACTTCGCCCCGCAGGT GTAGCACAGTTTTGTGGGCCAAACTACGATCTTAGGGTTTTCAGCGTGAT ATACTAAAAGATTGCCGGAAATTGCAGGAAACTGATCAAGGGGAATTCCT CTAAGCGATTTGCCCTTGACTTACTTTAAAAACATAACTAAAGTAACTTA TGGGTCCTATCTCGGGATTTCCCTTCCTTACTTTTCTCAACTTTCCTGCA ATCCGTTGATATTGGTAATAAGCGAGGCACCTAATTGACTGCTAAGATTA TCATCAAGTTTGAAAATGAAATATCTTTAAAAATTGTATATTTCACACTT GCGCTAATCTTTGAACTCAATTAGTTTCATGTTATAGAGGGATCCTCAAT AGATTAACCAATTTAAAGTCAAACATCCAAAGTTAAGCTTCACGAACTCA TTATTAATTCATATGAATTCCCATTATATTTGTATTCATTGGCTTCCTTC TTGCGGATCTCTGGTGAATATTTGAATTAAAAGTGCTTAGGGTAATCAAT TTTCCAAAAAGCACTCTTCTTCTCAACATATTCGCATTCTTCTTGACTAT ATAGTACAAATCGGTTGTCCATTTAGTGTAAGCGATACGTACCTTGCCAT TCTAGATTTAAGACCTATCTATAAGGATTCTTAAAATGAACCAGGTATTA GCCATAATTAACTGTACAATCGATTAAGTGTATGTAGGTTATGCCAGATT CTATATCAGTTATTGCAATGCAAGGAAAGCGAGCTAGTCAGGGCCAGAAC TTTAAGGTGATAAGATTGAATTTCGATGTAAAACCATAAAGATTTATTTT TGCAAATAAAGTTGACGATCAAAACGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tap-RA | 2172 | tap-RA | 37..2163 | 1..2127 | 10635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 17349137..17351262 | 1..2126 | 10615 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 17359686..17361812 | 1..2127 | 10635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 17352786..17354912 | 1..2127 | 10635 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6710..6835 | 995..1124 | 162 | 61.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..6856 | 1024..1085 | 148 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2262..2380 | 965..1084 | 146 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6819 | 1024..1084 | 143 | 70.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2431 | 939..1081 | 138 | 56.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2326..2422 | 1024..1117 | 136 | 61.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6864 | 969..1120 | 131 | 59.6 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1089..1146 | 1024..1081 | 128 | 69 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 966..1029 | 1020..1085 | 127 | 70.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6753..6843 | 1024..1117 | 120 | 61.7 | Plus |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7928..7994 | 1002..1068 | 119 | 64.2 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 9372..9438 | 1002..1068 | 119 | 64.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1057..1145 | 974..1068 | 118 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6813..6857 | 1024..1068 | 117 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2389 | 1034..1117 | 114 | 62.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 17349137..17351262 | 1..2126 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 1..1197 | 108..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 1..1197 | 108..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 1..1197 | 108..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 1..1197 | 108..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 1..1197 | 108..1304 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 37..2162 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 37..2162 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 5..2130 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 37..2162 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
tap-RA | 5..2130 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17359686..17361811 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17359686..17361811 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17359686..17361811 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 17352786..17354911 | 1..2126 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 17352786..17354911 | 1..2126 | 100 | Plus |
Translation from 107 to 1303
> RE52048.pep MAACYNAYSAGSQSFEFDEDDDDASFDSGYEKSFETEAQLSSRRRLDFGT PPTPAIPQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLN SRATNGVFDPPLTSTPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVK IKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH NYIFALEQVLESGGSINLDLEKLQNFTLSGERITKELFDALFVNPQPYPL FGRMFPYGQGMAPLAQHQTAPASHAEQPPAMGGFQHGMDYPQQPPGFDFT GSMRFYHQQQQQPHQPHHLQPNPQQESSPQQFSQEKYDLFRGSFDAAANL HSTNLDSGIHQQSSFYSQTPPWKDYPEDQAHVHPVPHQHSYKNFAPQV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10169-PA | 398 | GF10169-PA | 1..398 | 1..398 | 1330 | 74.4 | Plus |
Dana\GF14327-PA | 407 | GF14327-PA | 144..215 | 141..212 | 160 | 43.1 | Plus |
Dana\GF18335-PA | 310 | GF18335-PA | 215..309 | 108..210 | 158 | 39.8 | Plus |
Dana\GF11275-PA | 200 | GF11275-PA | 71..173 | 117..213 | 146 | 33 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13612-PA | 407 | GG13612-PA | 1..407 | 1..398 | 1839 | 93.9 | Plus |
Dere\GG21298-PA | 392 | GG21298-PA | 143..214 | 141..212 | 162 | 43.1 | Plus |
Dere\GG24254-PA | 315 | GG24254-PA | 239..314 | 133..210 | 155 | 46.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16587-PA | 400 | GH16587-PA | 1..400 | 1..398 | 1199 | 67.8 | Plus |
Dgri\GH13314-PA | 421 | GH13314-PA | 132..203 | 141..212 | 160 | 43.1 | Plus |
Dgri\GH18671-PA | 326 | GH18671-PA | 245..325 | 122..210 | 157 | 42.7 | Plus |
Dgri\GH19754-PA | 189 | GH19754-PA | 80..167 | 127..214 | 152 | 37.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tap-PA | 398 | CG7659-PA | 1..398 | 1..398 | 2136 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 108..214 | 91..212 | 156 | 36.9 | Plus |
dimm-PA | 390 | CG8667-PA | 108..214 | 91..212 | 156 | 36.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12435-PA | 388 | GI12435-PA | 1..368 | 1..378 | 1230 | 70.1 | Plus |
Dmoj\GI12220-PA | 413 | GI12220-PA | 133..205 | 140..212 | 163 | 43.8 | Plus |
Dmoj\GI20292-PA | 196 | GI20292-PA | 85..172 | 127..214 | 147 | 36.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15578-PA | 412 | GL15578-PA | 1..412 | 1..398 | 1401 | 73.5 | Plus |
Dper\GL26661-PA | 421 | GL26661-PA | 138..209 | 141..212 | 162 | 43.1 | Plus |
Dper\GL23421-PA | 327 | GL23421-PA | 255..326 | 135..210 | 158 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA20508-PA | 412 | GA20508-PA | 1..412 | 1..398 | 1394 | 73 | Plus |
Dpse\GA21247-PA | 421 | GA21247-PA | 138..209 | 141..212 | 162 | 43.1 | Plus |
Dpse\ato-PA | 330 | GA20401-PA | 258..329 | 135..210 | 157 | 46.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25695-PA | 398 | GM25695-PA | 1..398 | 1..398 | 2065 | 97.5 | Plus |
Dsec\GM23715-PA | 312 | GM23715-PA | 236..311 | 133..210 | 154 | 46.2 | Plus |
Dsec\GM20070-PA | 188 | GM20070-PA | 71..161 | 126..213 | 152 | 38.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14703-PA | 398 | GD14703-PA | 1..398 | 1..398 | 2080 | 97.7 | Plus |
Dsim\GD24318-PA | 386 | GD24318-PA | 141..212 | 141..212 | 162 | 43.1 | Plus |
Dsim\GD25551-PA | 188 | GD25551-PA | 69..161 | 124..213 | 156 | 38.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12331-PA | 390 | GJ12331-PA | 1..390 | 1..398 | 1225 | 68.6 | Plus |
Dvir\GJ22019-PA | 197 | GJ22019-PA | 79..175 | 120..214 | 164 | 35.7 | Plus |
Dvir\ato-PA | 325 | GJ10529-PA | 244..324 | 122..210 | 164 | 43.8 | Plus |
Dvir\GJ17849-PA | 418 | GJ17849-PA | 145..231 | 149..230 | 159 | 36.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16635-PA | 424 | GK16635-PA | 1..424 | 1..398 | 1254 | 68.2 | Plus |
Dwil\GK18738-PA | 392 | GK18738-PA | 140..211 | 141..212 | 160 | 43.1 | Plus |
Dwil\GK11390-PA | 331 | GK11390-PA | 260..330 | 136..210 | 151 | 45.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE19908-PA | 401 | GE19908-PA | 1..401 | 1..398 | 1842 | 95 | Plus |
Dyak\GE12913-PA | 393 | GE12913-PA | 143..214 | 141..212 | 162 | 43.1 | Plus |
Dyak\GE25860-PA | 313 | GE25860-PA | 237..312 | 133..210 | 154 | 46.2 | Plus |
Translation from 107 to 1303
> RE52048.hyp MAACYNAYSAGSQSFEFDEDDDDASFDSGYEKSFETEAQLSSRRRLDFGT PPTPAIPQPYSGGTWDAVPLSSPPAGFVGLLDTSSNHSTRSGRTLVEHLN SRATNGVFDPPLTSTPVKSPEDPNAPRPKRKYAVGKNRVTRSRSPTQVVK IKRFRRMKANDRERNRMHNLNDALEKLRVTLPSLPEETKLTKIEILRFAH NYIFALEQVLESGGSINLDLEKLQNFTLSGERITKELFDALFVNPQPYPL FGRMFPYGQGMAPLAQHQTAPASHAEQPPAMGGFQHGMDYPQQPPGFDFT GSMRFYHQQQQQPHQPHHLQPNPQQESSPQQFSQEKYDLFRGSFDAAANL HSTNLDSGIHQQSSFYSQTPPWKDYPEDQAHVHPVPHQHSYKNFAPQV*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
tap-PA | 398 | CG7659-PA | 1..398 | 1..398 | 2136 | 100 | Plus |
dimm-PB | 390 | CG8667-PB | 108..214 | 91..212 | 156 | 36.9 | Plus |
dimm-PA | 390 | CG8667-PA | 108..214 | 91..212 | 156 | 36.9 | Plus |