Clone RE52151 Report

Search the DGRC for RE52151

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:521
Well:51
Vector:pFlc-1
Associated Gene/TranscriptCG11190-RA
Protein status:RE52151.pep: gold
Sequenced Size:2560

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11190 2001-12-17 Blastp of sequenced clone
CG11190 2002-01-01 Sim4 clustering to Release 2
CG11190 2003-01-01 Sim4 clustering to Release 3
CG11190 2008-04-29 Release 5.5 accounting
CG11190 2008-08-15 Release 5.9 accounting
CG11190 2008-12-18 5.12 accounting

Clone Sequence Records

RE52151.complete Sequence

2560 bp (2560 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071437

> RE52151.complete
ACTTTCCAGCCCTGGAAAAATACCAAGACATCTACCATCTCTCTAAAAAC
GAAAACATCAAAGATTTACTACACCAAATTAAAATAAACTTATAAATCTT
TGCAACCTTAAGTCCGTGGCAATTTCCATTTTGCATTTCCATATCCGGCT
GGCCAAATAATTCCACGACATTTACGGATGTCGCGGTAACCTAAACACAA
AAAAAATAAATAAATATAAATAAAATAAAATAAAATACATTAAAACGGAT
CATCAGCTGTCGTTAGAACCGAAACGGACTAAGGGCGGAGGAACTGGCAC
TGAACCTATGGGCCAGCATGTATCCGGTGGCGTTTGTCTTGCTGCTGCTG
GTTGCACCTAATGCCGACGCGAATTTGGGACGCGATGACGAACGATTCCA
CGAGGAGCTAGTGGTTCGTCCATTGTCCGGCGACCATGTCAACACCTACT
TTCAGTTCACCACGCGCTGGCACTACGGCGAAAAGGATAATCTTTACCAC
ACCCAATTGACGCCTCGAGTAATTGCGGAGCTGTTGCAGCAGTTTGCGGT
AAAGGAGCTGCACATTGGCCTAACCCAGGGACTGTGGCGCTACGAGACAT
GGGGCTATCCCATTGTGGAGGCCACCAGCGGTGCCGAGATGTGGGCGTGG
TTCAGTGGCGCAAATTTGACCAACCGGGATGTGGATCGCCAGTGGAAGGA
GTTGGCCAACGTTTTCTCGGGCGTGTTGTGCGCCTCGTTGAATTTCGTCG
ACAATACGAATAGCATTGCACCGAGGCACTTGATTCGTCCACAATTTATG
CCAGCCAATGGCCAAAGATTCGTTCGCTATGCCACATTGCCGCGTGAGAT
CGTGTGCACGGAGAATCTGACGCCGTGGAAGAAACTACTGCCATGCGGTA
GTGCCTCAGGCTTTGCCTCACTTCTCAACTCGGGACATGTACACAACACC
AAATACCATTCGCTGGGCCTGAAGGTGCGCGTGCTCTGCGAGGATCACGA
TGAGGACAATTGCATTGTGGAGCTGACGCAGACGGCCAACTTGGTCTACG
ATCTCCGTCTGTTCGAATTGAGCAACAATGATTTCTCGCTGCGCCGCCTG
TTCGGCATGGGACTGAATGGCTATTGTGAGCTGGCCGAGAGCTCCAAGAT
CTATGTGCAGCGCAACGAGCTGGGCGAGCGCTATCAGCTGGTTCCAGAAC
CCGTGCACGAAGTGAAGACCACTCGTGGTGGGCATAGTGTCGTCTATTCC
GTCTACGATATGCACGAGCAGTTCAAAGAGGCCGGCGAACGGCTGTTTAA
TGTCGCCTGGCTGGCGCCGAAGAGCGCAAATCGTCGTCGCAATTTGGCGA
AGCCATCACTGCCACCGGTGACGGTTCATCGTTATCTATTGGGACACGGC
CAGGAGCGTGGCAGGATCGTTACGGAGGTGACGAACTCGCACTACGACGC
CCTGCCCATAATGCTGCAGGAGGTGATACCGTGGTATGTGCACGCCTATT
TGCACACCCTTTCCATACGTCGCAAGCCGCAGCGGGTCAACGAATACGGA
GGCCAGCGATTGACCTTCAAGCTGCTCCACTATACGCCCGGCAAGCAGAG
GGAACTGCCGTCCCATTTGGAAATTGGCTTCATGCTGCCCGGCCAGACAT
CGGCGCTGATAAGCATCGATGTGGATTATTTGCTGCTCAAATGGTTGGAG
TATCCGCCGGATGCGAATCACGGCCATTACATCGGCTCGGCCATTGTGTC
CAGCCAACTGCCGATGGGCAGAAACTATACCGCTCTGCCGCCGGAGGGGC
ATCTCTTTGAGCATTCGTTCAATGCCACACGTCCGAGTTATGTTCTCAGT
TTGCACACGGAAGCGCTGATTGTCTCACTGCCCACGCCGGACTTTAGCAT
GCCGTACAATGTGATCTGTCTCGCATGCACAGTGGTTGCCCTGGCCTTTG
GACCCATACACAGTGTGGCCACCAAGATGATCATTGTCGGTCGTCAGACA
TCGGCGCCGAAGAATTTTGTTAAGAAGATCTTCAATCAGCTTTTCCGGCG
CGGCAAGGCCACCGATGAGACAGCTGCCGAGGGCGAAGGATTGCCAGCGG
CAGGAGCAGCAGCAACTGGAGTTGCATCGGGGAGAGCAGCGATATCGCCA
GGCAGTCCATCGGGCGACCAGCCGCTGCTGGAAGATCTCGACGAGGAGGA
GGAGGAGGAGCAGGACTAGGAGGTGATACAAAAAAACAGCCATCGGGAGT
CGTGATAAGCTCCCACTGATAGTATACCCTTACAATTCCAATAAAGTATA
TTCACAAGGATACCAAACTGGGTTGCAATTCTCGATTTTTAAGTTATTTC
AATTTATTTCGGGGGTTTTCAAAAACAGTATTTTCAGTTATTTTGCTAAG
AAAAATCAAAGAAATCGCCATGGGATTTCTATATATATTGTAGATGAAAT
ATGTATAAACAATGTAAGAATGAGAATTGCAAAGTATACTTTTAGCTTTT
TAGAAAGCTAACCAAATTTGTAACGAAATAAACAAAGTGAAAATACAAAA
AAAAAAAAAA

RE52151.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG11190-RA 2555 CG11190-RA 10..2553 1..2544 12720 100 Plus
Paf-AHalpha.a 1433 Paf-AHalpha.a 29..86 1..58 290 100 Plus
Paf-AHalpha.d 1503 Paf-AHalpha.d 99..156 1..58 290 100 Plus
Paf-AHalpha.a 1433 Paf-AHalpha.a 109..176 62..129 250 91.1 Plus
Paf-AHalpha.d 1503 Paf-AHalpha.d 179..246 62..129 250 91.1 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:15:54
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8296283..8298333 2544..493 10045 99.4 Minus
chrX 22417052 chrX 8298542..8299033 492..1 2445 99.8 Minus
chrX 22417052 chrX 15675289..15675436 129..1 315 82.4 Minus
chr2L 23010047 chr2L 21152582..21152639 1..58 260 96.6 Plus
chr2L 23010047 chr2L 20899448..20899504 206..150 255 96.5 Minus
chr2R 21145070 chr2R 5646827..5646972 71..225 230 78.1 Plus
chrX 22417052 chrX 16676423..16676480 206..150 225 96.6 Minus
chrX 22417052 chrX 16676618..16676673 58..3 220 92.9 Minus
chr2L 23010047 chr2L 22886266..22886312 3..49 205 95.7 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8404535..8406586 2544..493 10260 100 Minus
X 23542271 X 8406795..8407286 492..1 2460 100 Minus
X 23542271 X 15785425..15785572 129..1 315 82.4 Minus
2L 23513712 2L 21154077..21154134 1..58 260 96.6 Plus
2L 23513712 2L 20900913..20900969 206..150 255 96.5 Minus
2R 25286936 2R 9759390..9759535 71..225 230 78.1 Plus
X 23542271 X 16786789..16786846 206..150 225 96.6 Minus
X 23542271 X 16786984..16787039 58..3 220 92.9 Minus
2L 23513712 2L 22995027..22995073 3..49 205 95.7 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8412633..8414684 2544..493 10260 100 Minus
X 23527363 X 8414893..8415384 492..1 2460 100 Minus
X 23527363 X 15793613..15793670 58..1 290 100 Minus
2L 23513712 2L 21154077..21154134 1..58 260 96.5 Plus
2L 23513712 2L 20900913..20900969 206..150 255 96.4 Minus
X 23527363 X 15793523..15793590 129..62 250 91.1 Minus
X 23527363 X 16794887..16794944 206..150 235 96.5 Minus
X 23527363 X 16795082..16795137 58..3 220 92.8 Minus
2R 25260384 2R 9760589..9760646 71..128 215 91.3 Plus
2L 23513712 2L 22995027..22995073 3..49 205 95.7 Plus
2R 25260384 2R 9760659..9760734 150..225 185 82.8 Plus
2L 23513712 2L 21154150..21154203 56..109 180 88.8 Plus
Blast to na_te.dros performed 2019-03-16 20:15:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dmir\spock 4952 Dmir\spock SPOCK 4952bp Derived from AY144571. 4776..4947 53..219 211 63.5 Plus
TART-A 13424 TART-A 13424bp 8585..8720 2044..2178 118 60 Plus
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 227..285 37..96 117 68.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2755..2886 2020..2146 115 58.3 Plus

RE52151.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:16:41 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8296281..8298333 493..2546 97 <- Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:21:41 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..1902 318..2219 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:59:17 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..1902 318..2219 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:52:56 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..1902 318..2219 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:24:03 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..1902 318..2219 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:56:08 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..1902 318..2219 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:24:50 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:59:17 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:52:56 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..2521 24..2544 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:24:03 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..2542 1..2542 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:56:08 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
CG11190-RA 1..2521 24..2544 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:41 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
X 8404533..8406586 493..2546 99 <- Minus
X 8406795..8407286 1..492 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:41 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
X 8404533..8406586 493..2546 99 <- Minus
X 8406795..8407286 1..492 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:16:41 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
X 8404533..8406586 493..2546 99 <- Minus
X 8406795..8407286 1..492 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:52:56 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8298566..8300619 493..2546 99 <- Minus
arm_X 8300828..8301319 1..492 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:59:11 Download gff for RE52151.complete
Subject Subject Range Query Range Percent Splice Strand
X 8412631..8414684 493..2546 99 <- Minus
X 8414893..8415384 1..492 100   Minus

RE52151.pep Sequence

Translation from 317 to 2218

> RE52151.pep
MYPVAFVLLLLVAPNADANLGRDDERFHEELVVRPLSGDHVNTYFQFTTR
WHYGEKDNLYHTQLTPRVIAELLQQFAVKELHIGLTQGLWRYETWGYPIV
EATSGAEMWAWFSGANLTNRDVDRQWKELANVFSGVLCASLNFVDNTNSI
APRHLIRPQFMPANGQRFVRYATLPREIVCTENLTPWKKLLPCGSASGFA
SLLNSGHVHNTKYHSLGLKVRVLCEDHDEDNCIVELTQTANLVYDLRLFE
LSNNDFSLRRLFGMGLNGYCELAESSKIYVQRNELGERYQLVPEPVHEVK
TTRGGHSVVYSVYDMHEQFKEAGERLFNVAWLAPKSANRRRNLAKPSLPP
VTVHRYLLGHGQERGRIVTEVTNSHYDALPIMLQEVIPWYVHAYLHTLSI
RRKPQRVNEYGGQRLTFKLLHYTPGKQRELPSHLEIGFMLPGQTSALISI
DVDYLLLKWLEYPPDANHGHYIGSAIVSSQLPMGRNYTALPPEGHLFEHS
FNATRPSYVLSLHTEALIVSLPTPDFSMPYNVICLACTVVALAFGPIHSV
ATKMIIVGRQTSAPKNFVKKIFNQLFRRGKATDETAAEGEGLPAAGAAAT
GVASGRAAISPGSPSGDQPLLEDLDEEEEEEQD*

RE52151.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:09:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21840-PA 654 GF21840-PA 38..602 14..578 2711 87.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:09:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17968-PA 629 GG17968-PA 1..616 1..619 3049 93.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:09:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH12887-PA 635 GH12887-PA 36..601 24..586 2348 74.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:16:02
Subject Length Description Subject Range Query Range Score Percent Strand
PIG-T-PA 633 CG11190-PA 1..633 1..633 3356 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI14441-PA 594 GI14441-PA 29..583 22..578 2255 73.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:09:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16569-PA 642 GL16569-PA 9..590 7..590 2504 80 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:09:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10827-PA 642 GA10827-PA 6..603 8..618 2507 76.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21409-PA 635 GM21409-PA 1..634 1..631 3296 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD16119-PA 597 GD16119-PA 21..584 59..619 2767 94.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:09:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18779-PA 633 GJ18779-PA 32..610 24..631 2326 70.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16308-PA 624 GK16308-PA 14..616 7..602 2331 71.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:09:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17459-PA 638 GE17459-PA 4..625 1..619 3055 94.5 Plus

RE52151.hyp Sequence

Translation from 317 to 2218

> RE52151.hyp
MYPVAFVLLLLVAPNADANLGRDDERFHEELVVRPLSGDHVNTYFQFTTR
WHYGEKDNLYHTQLTPRVIAELLQQFAVKELHIGLTQGLWRYETWGYPIV
EATSGAEMWAWFSGANLTNRDVDRQWKELANVFSGVLCASLNFVDNTNSI
APRHLIRPQFMPANGQRFVRYATLPREIVCTENLTPWKKLLPCGSASGFA
SLLNSGHVHNTKYHSLGLKVRVLCEDHDEDNCIVELTQTANLVYDLRLFE
LSNNDFSLRRLFGMGLNGYCELAESSKIYVQRNELGERYQLVPEPVHEVK
TTRGGHSVVYSVYDMHEQFKEAGERLFNVAWLAPKSANRRRNLAKPSLPP
VTVHRYLLGHGQERGRIVTEVTNSHYDALPIMLQEVIPWYVHAYLHTLSI
RRKPQRVNEYGGQRLTFKLLHYTPGKQRELPSHLEIGFMLPGQTSALISI
DVDYLLLKWLEYPPDANHGHYIGSAIVSSQLPMGRNYTALPPEGHLFEHS
FNATRPSYVLSLHTEALIVSLPTPDFSMPYNVICLACTVVALAFGPIHSV
ATKMIIVGRQTSAPKNFVKKIFNQLFRRGKATDETAAEGEGLPAAGAAAT
GVASGRAAISPGSPSGDQPLLEDLDEEEEEEQD*

RE52151.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:56:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11190-PA 633 CG11190-PA 1..633 1..633 3356 100 Plus