Clone RE52162 Report

Search the DGRC for RE52162

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:521
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG31760-RB
Protein status:RE52162.pep: gold
Preliminary Size:459
Sequenced Size:4400

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG17214 2002-01-01 Sim4 clustering to Release 2
CG31760 2002-05-30 Blastp of sequenced clone
CG31760 2003-01-01 Sim4 clustering to Release 3
CG31760 2008-04-29 Release 5.5 accounting
CG31760 2008-08-15 Release 5.9 accounting
CG31760 2008-12-18 5.12 accounting

Clone Sequence Records

RE52162.complete Sequence

4400 bp (4400 high quality bases) assembled on 2002-05-30

GenBank Submission: AY118394

> RE52162.complete
AGTTGGTCGCGGAGTTTCGAGTGTGTCGGTTGTGCCATAGCGGAATAACG
AAGAAAGCAGCTACAAACAAAATTGAATAAAACCAAACAATAAAAGAAAC
GTTAAAGTGGAGGGAGATGATGAAGTGAAAATAACAGGCTCAGTGATAAC
TGATACAAAAGGAAAAACGCTTGAAAATCAGACGTCTTTGATTTTGCAGA
AGGCAATAGAAAGTGCGAGTCATGATTTGATTTTCAGGAAAAAGGAGTTG
CAAATGCGAAAACAACAATGAAATGCTGGCACAATGTGGTGAGGCGCAGA
AGGAAGAAGCCGACGGCAGCGGCGGCGGCGAAAGGATCAAAGGGGTCGCA
TGGAGGCGTGGCAAGTCCTCGAGATGAAGATGCCATCTGCCAGCGGCAGC
AACAAGTGGATACCTACACTTGGCTAACAACACAAGCTGTCCCTCTGCTG
TGGCTGCACTTGTTGCTCCTTGTCGCATTTGCAAAACATGCGGCTGCAGC
CACAACAATTGCCACAAATCCCGAGGCCACCACAACAACGGTGAGCAACT
ACACGGTGACGACCACGGCACTATCATCATCCACGACAACCACTTCATCG
GGATCAGCTCCAGCTTTATCATCTGCGGCGGATAAGTTCGCCGGCAACTG
GGCCAACTTGGAGGATTCGTTCCGGAATATCGTGCGGATTGGTGATGGGA
ACACGGTGACACGGACGTCCATTGAACAATCGCTGGTGACGATACACGAC
ATTGCCACCGAGAACTTGGGGACATTGTGCATCTCGACCCTATATCGCCC
CCTACAAGTGCCCATCAACTCGGAACGATATGAGAGCTCTAGACAGAAAA
CCGATTTGGCCGCCTCGATACTCCAGGAAGTGGGCATCATTCGGCACGGC
GGACTGTCGGATGCTTTAGCCAAAGGCCTGCTAACCGATGACTTTATAAC
TGGAGCCCGCATTTTGGCCCTGAATCTAACGAATGGAGCGGTCCAGTCCT
ACGTCTGGTGGGTCAAGGGAACAGCGGCGGAAATCCAGCGGTACGACGAG
GACGGACTGCAGATTGGCAAAAAGCCCGCTGGCAGTTATCCCTGGTTCGA
CGATGAAACATCCTCACCCACCTTGCGTTCGCCCAAATTCGCGCCCAGTC
CGCCCAACAACTACTACAAGGGCTGGTGGACATATCCCTACTTCTCGTGC
TCGCAGAGCCGCTGGCTGGTGTCCTACAGCATTGCCATTCCGCCGATTGG
GCGCCATGGGTTAAGGGGCTTCATCAGCATCGACATTGATGTGTCCACGC
TGCGGGTTAACCAATGCGAGGCGGAGCCCTATCCATTTGGCAGTCGCCGG
CAGAAAATGCAGCAACTGCAGACGCACAATCGTTTGGGGGCACGAAGATC
CTTGTTTTTGGGCAGCCGAATGGGGGCCATCGATGAGAGCACCATCAACG
ATTTGCAGGCATTCCACAGCTCCCACAAGTGTCATCGCACCTCAATGGTG
TGTGATTACCGTCAGCCAAGTGCGGAGACTCCTACCGTAACTGGTGGCAA
ATTGCTGACCACGCTGACCGGAAGCAGCAGCTGGACTCGTGGATCGTACC
AGTGCCTCTGCCGCGGGGGATTCTACTCGCTGCGGCATCCGGACGGATTC
AACGGCACCATCATGGAGATTGCCTGGCAGGAGCAGCAGGACAACATAAG
CAATTACTATTCCGAGGTTTTTAAGTGTTTGCCCTGCGCCCCCGGCTGCG
ACACGTGCACGGGTCCGGAGCCATGTTTGGCCAACTACCACTGGCCATTC
AGAATATCCCTGTTGACCATATCCATTGGCTGTGCCTGCGGCACCTTCGT
TCTCGCCGGCTATCTCTTTCGGCATCGTCGCGTGAAGGTCTTCAAGGTGG
CCAGCCCCATCTTTCTGATGATCACGCTCATCGGCTGCGCCATCATGTAT
CTGGAGATGGTAGCTATCTTTCCCTATCTGGATACCACTTGGTGTATTGC
CACTAAATGGACGCGGCATATGGGTTTTTGCATCACCTACACTTCGCTGC
TTATGAAAACCTGGCGGGTTTCTTTAACGTATCGTGTCAAGTCGGCCCAC
AAAATAAAACTGAATGATCAGCAGCTTTTGCAGTGGATGGTGCCCATTCT
GTTGGTTATGTTGATCTACTTGGGCACATGGACGATTTCGGCAACGCCCA
CAGCAGAAGTGATCTTAGATCAGAGTCAGTTGAAGTTCAAGCAGTGCTCG
TACAACTGGTGGGATCACAGTTTGGCCATCGGAGAAGTGTTCTTCCTGGC
CTGGGGCATCCGGGTTTGCTACAATGTGCGAAATGCGGAGAGTCTGTACA
ACGAGGCCCGGCTCATCTCCTACGCCATCTACAACATAGCCCTCGTCAAT
ATCGCCATGGTGGTGTTCCATGTAATGCTCTTTCCGAACGCCGGACCCGA
TTATAAGTATATGCTGGGATTTGTGCGCACCCAGCTTTCCACGACCACCA
CCATTGCCCTCGTCTTCGGTCCAAAGATTTTGCGTGTCTTTAAGGGCCAA
GGCGACAAGTGGGATCAGAAGGCCAAGGTGCGGAGCATAACAGCATCATT
CTCGCTAAATGGAGTGGGTCTGGTCCCGGAGGAGTCGCCTGATCTTTACC
AGGAGAACGAAGAACTCAAGGAACAAGTCCAGAAACTGGCCCACCAAATC
GAGTTCATGAAGACTGTGCACATGCAGATGAACAACAGGCATCTGAAGCC
AAAGCCCGGCGGATATTTTACCATAACTTCAACCTCGTTTCAAGCGCCAT
ATAGCAAAAACACGGTTTCCACAGCGCAGACGCAAACGGGCAAGGATGAG
AACAGCACGCCAACGAAATTAAAATCGCCCAAAGGCAAAGTCTGACGAGG
TCAACGAAGTGTTAAAGATTGCTCAATAGAAATCGATGGGGGGCAGGGCA
GAACCACCCTGGTGGAGGATGCCATTGAATTTAATTTCCACCTAGCGGAT
ACGGAGAAGGGGTTGATTGTCCAGGAAGACGAGCGGCCAGGATCAGATGA
GGAGGAGGCGGCCTTGATCGCACAGTTTCGCCGCCTCTTTGCGCCCATTT
TGGATGATAGCTTGAATCTGTACTACCAACTCAACGATTTGGATGACACG
GAGCACGTGAGGATCCATCAAACGGTAGCCCAGATGAATGATCTGACCAG
CAGCGAAGAGGAGACAATGGTTACCCAGGTGAACAGTCCATCGCCACCGC
CGGTGGGTGTGGAACTTTTGCTTCCAATCTCCAGCGACAGTTCGACGGCC
AGCAGTTCTCTGTACGCCATCCACACTCCGTCTCCGGCTCATCCCAGTGG
TGTGCTCCTGATGCCCCAGAATTTGGAGTCACCGTTGCTGTCCGGCAGTG
ATGCCATCACAATCACCGAGCAGGTAGAGCTGCATAATCCGCCACACCAT
CTGCAGCTACTCGAGGATGAGAACAACACATCCTGTTCGCTGTCATCGAA
TCTGACGGATAGCAAGACCCTGGATGGTCGCACCCCAATCGTCGTCTGAT
GGCTTCCATCTCCAATCCCGTTCTGCTTAACTTGTGATTATGTTTACACA
GTCTTAGAGCTACAACAAACAGTTAGCGAAAAATAAGCCGCTTAATGTTT
AATATAGTCTTAAATAATGTTTGTGTGTATGTGTCTGTCAAAGTTGTTTA
AATATTAAAGGCGTTTATGCGGTAAGTCAAATCATTTCGAACATCATTTC
ATTGCTTAAACTATTTCAAATGAAGCTTCCAATATTTATAGAAACCCAGA
AATTTTAGCAAATATCCCACCAAATACATTTTTCAAATTTCTTAGAGCTT
TTACTTATTTTCTCAAATGAAACAATGATATATACATTTCTAAAATATCT
TTTCACAAAACTATTTTATTTGTCGAACGCCTGTCTTAATTCACAATTCG
AACATTGCCTCTTTTCACTTTTAAGAACGTTTCATCCTTAAACTTAAACT
TTCCAGCCGCATAAACGCAAACTTCATGTGTAACCTTTTATTTTCGCTTT
TTAGTCATATCCACCCAAATCATTATCCCATCATCCATGATCTCCATCGT
TTTTGAAACAGCAGAAAAGTATCAACATTGAGCAAATTTTTCTCACTTCG
TTCGGATCGACAGAAGGATGTTGTATAGAAGAAAGTAGGCAGCCAGTTGG
TCTGATGGGTCTCATAGAGTCCATCGGAGCCCCTAGGGACTTGGCATTAA
TAAATCTCATTTAGCACTCATGCACCTAGCGAAATAAATTGCATTTTCCT
TGTTCTCGTTGCACCCATTCATAGGACAAATATTATTTGCTTCGTAGCTA
AATTTACATGATTTTCATGGTCATAATCTTAAAACAAAAAAAAAAAAAAA

RE52162.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG31760-RB 4385 CG31760-RB 1..4385 1..4385 21895 99.9 Plus
CG31760.a 4401 CG31760.a 67..4401 51..4385 21660 99.9 Plus
CG31760-RA 4331 CG31760-RA 1..2855 1..2855 14260 99.9 Plus
CG31760-RA 4331 CG31760-RA 2854..4331 2908..4385 7375 99.9 Plus
CG31760.a 4401 CG31760.a 1..50 1..50 235 98 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 14:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 12167340..12168871 2854..4385 7585 99.7 Plus
chr2L 23010047 chr2L 12152161..12152629 246..714 2345 100 Plus
chr2L 23010047 chr2L 12159899..12160305 1094..1500 2035 100 Plus
chr2L 23010047 chr2L 12161388..12161690 1500..1802 1515 100 Plus
chr2L 23010047 chr2L 12166774..12167024 2421..2671 1240 99.6 Plus
chr2L 23010047 chr2L 12165763..12165972 2211..2420 1050 100 Plus
chr2L 23010047 chr2L 12143724..12143921 50..247 990 100 Plus
chr2L 23010047 chr2L 12159344..12159539 901..1096 980 100 Plus
chr2L 23010047 chr2L 12154126..12154314 714..902 945 100 Plus
chr2L 23010047 chr2L 12167076..12167266 2665..2855 940 99.5 Plus
chr2L 23010047 chr2L 12162104..12162259 1801..1956 780 100 Plus
chr2L 23010047 chr2L 12165547..12165692 2066..2211 700 98.6 Plus
chr2L 23010047 chr2L 12165375..12165487 1955..2067 565 100 Plus
chr2L 23010047 chr2L 12141439..12141488 1..50 235 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:26 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 14:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12168686..12170228 2854..4396 7700 99.9 Plus
2L 23513712 2L 12153506..12153974 246..714 2345 100 Plus
2L 23513712 2L 12161244..12161650 1094..1500 2035 100 Plus
2L 23513712 2L 12162739..12163041 1500..1802 1515 100 Plus
2L 23513712 2L 12168120..12168370 2421..2671 1255 100 Plus
2L 23513712 2L 12167112..12167321 2211..2420 1050 100 Plus
2L 23513712 2L 12145069..12145266 50..247 990 100 Plus
2L 23513712 2L 12160689..12160884 901..1096 980 100 Plus
2L 23513712 2L 12155471..12155659 714..902 945 100 Plus
2L 23513712 2L 12168422..12168612 2665..2855 940 99.5 Plus
2L 23513712 2L 12163455..12163610 1801..1956 780 100 Plus
2L 23513712 2L 12166897..12167042 2066..2211 730 100 Plus
2L 23513712 2L 12166725..12166837 1955..2067 565 100 Plus
2L 23513712 2L 12142784..12142833 1..50 235 98 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12168686..12170228 2854..4396 7700 99.9 Plus
2L 23513712 2L 12153506..12153974 246..714 2345 100 Plus
2L 23513712 2L 12161244..12161650 1094..1500 2035 100 Plus
2L 23513712 2L 12162739..12163041 1500..1802 1515 100 Plus
2L 23513712 2L 12168120..12168370 2421..2671 1255 100 Plus
2L 23513712 2L 12167112..12167321 2211..2420 1050 100 Plus
2L 23513712 2L 12145069..12145266 50..247 990 100 Plus
2L 23513712 2L 12160689..12160884 901..1096 980 100 Plus
2L 23513712 2L 12155471..12155659 714..902 945 100 Plus
2L 23513712 2L 12168422..12168612 2665..2855 940 99.4 Plus
2L 23513712 2L 12163455..12163610 1801..1956 780 100 Plus
2L 23513712 2L 12166897..12167042 2066..2211 730 100 Plus
2L 23513712 2L 12166725..12166837 1955..2067 565 100 Plus
2L 23513712 2L 12142784..12142833 1..50 235 98 Plus
Blast to na_te.dros performed 2019-03-16 14:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5669..5795 3035..3163 127 58.8 Plus
TART-C 11124 TART-C TARTC 11124bp 7124..7250 3035..3163 127 58.8 Plus
TAHRE 10463 TAHRE OSV 10463bp 2103..2152 207..158 123 76.5 Minus
17.6 7439 17.6 DMIS176 7439bp AKA(J01060,J01061) Derived from X01472 (g8142) (Rel. 36, Last updated, Version 2). 6473..6600 54..176 123 59.7 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 6166..6319 3758..3910 122 57.5 Plus

RE52162.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 14:22:01 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 12165377..12165486 1957..2066 100 -> Plus
chr2L 12165548..12165692 2067..2211 98 -> Plus
chr2L 12165764..12165972 2212..2420 100 -> Plus
chr2L 12141439..12141488 1..50 98 -> Plus
chr2L 12143725..12143921 51..247 100 -> Plus
chr2L 12152163..12152629 248..714 100 -> Plus
chr2L 12154127..12154313 715..901 100 -> Plus
chr2L 12159345..12159537 902..1094 100 -> Plus
chr2L 12159900..12160305 1095..1500 100 -> Plus
chr2L 12161389..12161690 1501..1802 100 -> Plus
chr2L 12162106..12162259 1803..1956 100 -> Plus
chr2L 12166774..12167023 2421..2670 99 -> Plus
chr2L 12167082..12167266 2671..2855 100 -> Plus
chr2L 12167342..12168871 2856..4385 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:33:38 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RA 1..2588 268..2855 100 == Plus
CG31760-RA 2589..3228 2910..3549 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:36:08 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RB 1..2628 268..2895 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 15:04:24 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RC 1..3282 268..3549 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:27:41 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RA 1..2588 268..2855 100 == Plus
CG31760-RA 2589..3228 2910..3549 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:26:23 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RC 1..3282 268..3549 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:33:38 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RA 1..2855 1..2855 99 == Plus
CG31760-RA 2856..4331 2910..4385 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:36:08 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RB 1..4385 1..4385 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 15:04:24 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RB 5..4389 1..4385 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:27:41 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RA 1..2855 1..2855 99 == Plus
CG31760-RA 2856..4331 2910..4385 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:26:23 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
CG31760-RB 5..4389 1..4385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:01 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12168428..12168612 2671..2855 100 -> Plus
2L 12166898..12167042 2067..2211 100 -> Plus
2L 12142784..12142833 1..50 98 -> Plus
2L 12145070..12145266 51..247 100 -> Plus
2L 12153508..12153974 248..714 100 -> Plus
2L 12155472..12155658 715..901 100 -> Plus
2L 12160690..12160882 902..1094 100 -> Plus
2L 12161245..12161650 1095..1500 100 -> Plus
2L 12162740..12163041 1501..1802 100 -> Plus
2L 12163457..12163610 1803..1956 100 -> Plus
2L 12166727..12166836 1957..2066 100 -> Plus
2L 12167113..12167321 2212..2420 100 -> Plus
2L 12168120..12168369 2421..2670 100 -> Plus
2L 12168688..12170217 2856..4385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:01 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12168428..12168612 2671..2855 100 -> Plus
2L 12166898..12167042 2067..2211 100 -> Plus
2L 12142784..12142833 1..50 98 -> Plus
2L 12145070..12145266 51..247 100 -> Plus
2L 12153508..12153974 248..714 100 -> Plus
2L 12155472..12155658 715..901 100 -> Plus
2L 12160690..12160882 902..1094 100 -> Plus
2L 12161245..12161650 1095..1500 100 -> Plus
2L 12162740..12163041 1501..1802 100 -> Plus
2L 12163457..12163610 1803..1956 100 -> Plus
2L 12166727..12166836 1957..2066 100 -> Plus
2L 12167113..12167321 2212..2420 100 -> Plus
2L 12168120..12168369 2421..2670 100 -> Plus
2L 12168688..12170217 2856..4385 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 14:22:01 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12168428..12168612 2671..2855 100 -> Plus
2L 12166898..12167042 2067..2211 100 -> Plus
2L 12142784..12142833 1..50 98 -> Plus
2L 12145070..12145266 51..247 100 -> Plus
2L 12153508..12153974 248..714 100 -> Plus
2L 12155472..12155658 715..901 100 -> Plus
2L 12160690..12160882 902..1094 100 -> Plus
2L 12161245..12161650 1095..1500 100 -> Plus
2L 12162740..12163041 1501..1802 100 -> Plus
2L 12163457..12163610 1803..1956 100 -> Plus
2L 12166727..12166836 1957..2066 100 -> Plus
2L 12167113..12167321 2212..2420 100 -> Plus
2L 12168120..12168369 2421..2670 100 -> Plus
2L 12168688..12170217 2856..4385 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 15:04:24 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12142784..12142833 1..50 98 -> Plus
arm_2L 12145070..12145266 51..247 100 -> Plus
arm_2L 12153508..12153974 248..714 100 -> Plus
arm_2L 12155472..12155658 715..901 100 -> Plus
arm_2L 12160690..12160882 902..1094 100 -> Plus
arm_2L 12161245..12161650 1095..1500 100 -> Plus
arm_2L 12162740..12163041 1501..1802 100 -> Plus
arm_2L 12163457..12163610 1803..1956 100 -> Plus
arm_2L 12166727..12166836 1957..2066 100 -> Plus
arm_2L 12166898..12167042 2067..2211 100 -> Plus
arm_2L 12167113..12167321 2212..2420 100 -> Plus
arm_2L 12168120..12168369 2421..2670 100 -> Plus
arm_2L 12168428..12168612 2671..2855 100 -> Plus
arm_2L 12168688..12170217 2856..4385 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:00:13 Download gff for RE52162.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12167113..12167321 2212..2420 100 -> Plus
2L 12168428..12168612 2671..2855 100 -> Plus
2L 12168120..12168369 2421..2670 100 -> Plus
2L 12166898..12167042 2067..2211 100 -> Plus
2L 12153508..12153974 248..714 100 -> Plus
2L 12155472..12155658 715..901 100 -> Plus
2L 12160690..12160882 902..1094 100 -> Plus
2L 12161245..12161650 1095..1500 100 -> Plus
2L 12162740..12163041 1501..1802 100 -> Plus
2L 12163457..12163610 1803..1956 100 -> Plus
2L 12166727..12166836 1957..2066 100 -> Plus
2L 12168688..12170217 2856..4385 99   Plus
2L 12142784..12142833 1..50 98 -> Plus
2L 12145070..12145266 51..247 100 -> Plus

RE52162.pep Sequence

Translation from 267 to 2894

> RE52162.pep
MKCWHNVVRRRRKKPTAAAAAKGSKGSHGGVASPRDEDAICQRQQQVDTY
TWLTTQAVPLLWLHLLLLVAFAKHAAAATTIATNPEATTTTVSNYTVTTT
ALSSSTTTTSSGSAPALSSAADKFAGNWANLEDSFRNIVRIGDGNTVTRT
SIEQSLVTIHDIATENLGTLCISTLYRPLQVPINSERYESSRQKTDLAAS
ILQEVGIIRHGGLSDALAKGLLTDDFITGARILALNLTNGAVQSYVWWVK
GTAAEIQRYDEDGLQIGKKPAGSYPWFDDETSSPTLRSPKFAPSPPNNYY
KGWWTYPYFSCSQSRWLVSYSIAIPPIGRHGLRGFISIDIDVSTLRVNQC
EAEPYPFGSRRQKMQQLQTHNRLGARRSLFLGSRMGAIDESTINDLQAFH
SSHKCHRTSMVCDYRQPSAETPTVTGGKLLTTLTGSSSWTRGSYQCLCRG
GFYSLRHPDGFNGTIMEIAWQEQQDNISNYYSEVFKCLPCAPGCDTCTGP
EPCLANYHWPFRISLLTISIGCACGTFVLAGYLFRHRRVKVFKVASPIFL
MITLIGCAIMYLEMVAIFPYLDTTWCIATKWTRHMGFCITYTSLLMKTWR
VSLTYRVKSAHKIKLNDQQLLQWMVPILLVMLIYLGTWTISATPTAEVIL
DQSQLKFKQCSYNWWDHSLAIGEVFFLAWGIRVCYNVRNAESLYNEARLI
SYAIYNIALVNIAMVVFHVMLFPNAGPDYKYMLGFVRTQLSTTTTIALVF
GPKILRVFKGQGDKWDQKAKVRSITASFSLNGVGLVPEESPDLYQENEEL
KEQVQKLAHQIEFMKTVHMQMNNRHLKPKPGGYFTITSTSFQAPYSKNTV
STAQTQTGKDENSTPTKLKSPKGKV*

RE52162.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF14189-PA 1060 GF14189-PA 1..853 1..863 3638 81.1 Plus
Dana\GF23529-PA 932 GF23529-PA 413..856 387..832 367 23.5 Plus
Dana\GF13058-PA 243 GF13058-PA 1..221 567..773 352 35.7 Plus
Dana\GF13057-PA 178 GF13057-PA 1..161 333..541 189 28.8 Plus
Dana\GF16969-PA 1234 GF16969-PA 462..731 520..770 173 22.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23773-PA 1077 GG23773-PA 1..866 1..863 4139 94.3 Plus
Dere\GG22857-PA 284 GG22857-PA 12..260 539..773 388 34.9 Plus
Dere\GG25024-PA 983 GG25024-PA 456..928 387..859 355 23.1 Plus
Dere\GG22856-PA 197 GG22856-PA 62..176 439..548 187 39 Plus
Dere\GG11045-PA 1217 GG11045-PA 457..736 520..782 177 23.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:23:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH10561-PA 1107 GH10561-PA 120..845 133..863 3407 86.4 Plus
Dgri\GH23717-PA 636 GH23717-PA 120..631 133..649 2283 82.8 Plus
Dgri\GH13228-PA 801 GH13228-PA 281..725 387..832 363 23.7 Plus
Dgri\GH21230-PA 243 GH21230-PA 1..221 567..773 353 35.7 Plus
Dgri\GH21228-PA 293 GH21228-PA 27..227 298..543 219 26.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:17:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG31760-PD 875 CG31760-PD 1..875 1..875 4641 100 Plus
CG31760-PC 1093 CG31760-PC 1..875 1..875 4641 100 Plus
CG31760-PB 875 CG31760-PB 1..875 1..875 4641 100 Plus
CG43795-PA 1420 CG43795-PA 583..1063 299..812 612 29.6 Plus
smog-PF 926 CG31660-PF 424..850 387..832 348 24.7 Plus
smog-PE 894 CG31660-PE 424..868 387..832 336 23.4 Plus
smog-PC 944 CG31660-PC 424..868 387..832 336 23.4 Plus
smog-PD 951 CG31660-PD 424..868 387..832 336 23.4 Plus
smog-PB 790 CG31660-PB 424..775 387..754 304 24.7 Plus
GABA-B-R2-PA 1220 CG6706-PA 457..736 520..782 172 23.3 Plus
GABA-B-R2-PB 1221 CG6706-PB 457..736 520..782 172 23.3 Plus
GABA-B-R2-PC 1224 CG6706-PC 457..740 520..782 166 23.8 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:23:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI16829-PA 1084 GI16829-PA 116..854 126..861 3398 85.7 Plus
Dmoj\GI20516-PA 469 GI20516-PA 14..422 332..774 577 31.1 Plus
Dmoj\GI18108-PA 907 GI18108-PA 387..831 387..832 340 22.4 Plus
Dmoj\GI22184-PA 1225 GI22184-PA 457..726 520..770 175 23.2 Plus
Dmoj\GI13237-PA 844 GI13237-PA 463..829 510..855 159 22.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL18616-PA 1294 GL18616-PA 93..538 132..573 2001 82.3 Plus
Dper\GL18617-PA 516 GL18617-PA 1..307 564..870 1568 93.8 Plus
Dper\GL18639-PA 681 GL18639-PA 154..638 387..871 359 23.1 Plus
Dper\GL16916-PA 244 GL16916-PA 1..221 567..773 348 35.3 Plus
Dper\GL16915-PA 118 GL16915-PA 12..117 441..541 200 40.4 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA16455-PA 1120 GA16455-PA 172..907 132..863 3542 88.6 Plus
Dpse\GA30499-PA 1564 GA30499-PA 721..1210 299..817 648 29.6 Plus
Dpse\GA16374-PA 988 GA16374-PA 468..912 387..832 362 23.6 Plus
Dpse\GA19799-PA 1223 GA19799-PA 456..769 520..812 176 21.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:23:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM26751-PA 1509 GM26751-PA 1..583 1..586 3011 94.4 Plus
Dsec\GM26751-PA 1509 GM26751-PA 1007..1306 563..862 1619 99.3 Plus
Dsec\GM18497-PA 928 GM18497-PA 408..852 387..832 355 23.2 Plus
Dsec\GM16015-PA 260 GM16015-PA 1..188 567..754 352 39.4 Plus
Dsec\GM16014-PA 174 GM16014-PA 3..169 330..544 201 28.9 Plus
Dsec\GM23697-PA 1222 GM23697-PA 457..736 520..782 176 23.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:23:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD23825-PA 1076 GD23825-PA 1..861 1..863 4587 97.9 Plus
Dsim\GD23305-PA 925 GD23305-PA 405..849 387..832 355 23.2 Plus
Dsim\GD11766-PA 177 GD11766-PA 3..172 327..544 201 29 Plus
Dsim\GD18506-PA 1220 GD18506-PA 457..736 520..782 177 23.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17198-PA 1098 GJ17198-PA 137..862 133..863 3512 88 Plus
Dvir\GJ22367-PA 644 GJ22367-PA 1..267 567..817 377 31.8 Plus
Dvir\GJ16295-PA 862 GJ16295-PA 335..807 387..859 353 23.6 Plus
Dvir\GJ22366-PA 191 GJ22366-PA 62..169 439..541 179 37.4 Plus
Dvir\GJ24302-PA 1199 GJ24302-PA 457..726 520..770 171 22.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:23:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15488-PA 447 GK15488-PA 31..446 123..514 1654 75.3 Plus
Dwil\GK15489-PA 509 GK15489-PA 1..301 564..864 1571 95 Plus
Dwil\GK23185-PA 254 GK23185-PA 1..221 567..773 352 35.7 Plus
Dwil\GK24468-PA 867 GK24468-PA 347..791 387..832 350 23.1 Plus
Dwil\GK23184-PA 182 GK23184-PA 1..182 333..562 189 27.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:23:27
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE18577-PA 1084 GE18577-PA 1..869 1..863 4195 94.2 Plus
Dyak\GE18313-PA 944 GE18313-PA 424..868 387..832 355 23.2 Plus
Dyak\GE14293-PA 274 GE14293-PA 1..188 567..754 350 39.4 Plus
Dyak\GE14292-PA 179 GE14292-PA 5..169 327..541 188 28.9 Plus
Dyak\GE24090-PA 1227 GE24090-PA 458..737 520..782 177 23.3 Plus

RE52162.hyp Sequence

Translation from 267 to 2894

> RE52162.hyp
MKCWHNVVRRRRKKPTAAAAAKGSKGSHGGVASPRDEDAICQRQQQVDTY
TWLTTQAVPLLWLHLLLLVAFAKHAAAATTIATNPEATTTTVSNYTVTTT
ALSSSTTTTSSGSAPALSSAADKFAGNWANLEDSFRNIVRIGDGNTVTRT
SIEQSLVTIHDIATENLGTLCISTLYRPLQVPINSERYESSRQKTDLAAS
ILQEVGIIRHGGLSDALAKGLLTDDFITGARILALNLTNGAVQSYVWWVK
GTAAEIQRYDEDGLQIGKKPAGSYPWFDDETSSPTLRSPKFAPSPPNNYY
KGWWTYPYFSCSQSRWLVSYSIAIPPIGRHGLRGFISIDIDVSTLRVNQC
EAEPYPFGSRRQKMQQLQTHNRLGARRSLFLGSRMGAIDESTINDLQAFH
SSHKCHRTSMVCDYRQPSAETPTVTGGKLLTTLTGSSSWTRGSYQCLCRG
GFYSLRHPDGFNGTIMEIAWQEQQDNISNYYSEVFKCLPCAPGCDTCTGP
EPCLANYHWPFRISLLTISIGCACGTFVLAGYLFRHRRVKVFKVASPIFL
MITLIGCAIMYLEMVAIFPYLDTTWCIATKWTRHMGFCITYTSLLMKTWR
VSLTYRVKSAHKIKLNDQQLLQWMVPILLVMLIYLGTWTISATPTAEVIL
DQSQLKFKQCSYNWWDHSLAIGEVFFLAWGIRVCYNVRNAESLYNEARLI
SYAIYNIALVNIAMVVFHVMLFPNAGPDYKYMLGFVRTQLSTTTTIALVF
GPKILRVFKGQGDKWDQKAKVRSITASFSLNGVGLVPEESPDLYQENEEL
KEQVQKLAHQIEFMKTVHMQMNNRHLKPKPGGYFTITSTSFQAPYSKNTV
STAQTQTGKDENSTPTKLKSPKGKV*

RE52162.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG31760-PD 875 CG31760-PD 1..875 1..875 4641 100 Plus
CG31760-PC 1093 CG31760-PC 1..875 1..875 4641 100 Plus
CG31760-PB 875 CG31760-PB 1..875 1..875 4641 100 Plus
CG43795-PA 1420 CG43795-PA 583..1063 299..812 612 29.6 Plus
pog-PF 926 CG31660-PF 424..850 387..832 348 24.7 Plus