Clone RE52196 Report

Search the DGRC for RE52196

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:521
Well:96
Vector:pFlc-1
Associated Gene/TranscriptCG14207-RB
Protein status:RE52196.pep: gold
Sequenced Size:1275

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG14207 2009-03-31 Manual selection by Sue Celniker

Clone Sequence Records

RE52196.complete Sequence

1275 bp assembled on 2009-05-29

GenBank Submission: BT088760.1

> RE52196.complete
AGTTCAGAAATTGAAACGCGGCTATCTGTGCGATACGTCCAACCGAAATC
ACACACTTGAACGTCTTGAGTTTCGAATACATATAGAAAACCCATCGAGT
TCCCTTTTTTTTTGGTTGCTCCGTCGATTAGCAAGTGAACAAGCTCGAAA
GCGCGTTGAGCAGAACAGAACAGAACAGAGAATAATAGAACGGTATACAG
TATATACAGTATATACGGTATACAGTGTACAGCGAAGAGATTGGAGATTC
CATCTAGCGAAGCAACCACCAAATAAACCACCACAAACAGCACAACAATG
GCCGAGGCTAACAAGAGGAATATCCCCATCAAGCTGGGCGACTTCAGCGT
CATCGACACGGAGTTCAGCAACATCCGCGAGCGCTTCGACTCCGAGATGC
GCAAAATGGAGGAGGAGATGGCCAAGTTCCGTCACGAGCTGATGAACCGC
GAGGCGAACTTCTTCGAGTCCACCAGCTCTACTAAAAAAACAACAACTAC
CAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGA
ACTACGTCTCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAAC
AAAGTGCTGAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAAT
TGTTGTGAAAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGG
AGAAGTCGGACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTG
CTGCCCAAGGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGA
CGGAGTCCTGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGA
CACTGATTCCCATTGCGCACAAGTGAAGGCCAGCCCAGTTGTCCAGTTGT
CCAGCTATCCAGTCACCATGGTCCCAAGCCGGTTGAGGAGCAATAGGCGC
AGGAGGAGCAGGAGGAGTGCGAGCTGCTGCCGATCAGATTAAATCCATAC
ACACATTGAGTTTAATCCAATCCTATCTAAATGATTAATTTTTTTGGTTC
TGACTTAAAGCTAAACTATGTTACTGACGTACTACTCATTAACTTAAATA
TAATTGAAATTATTATTAAATTTGATTAATTTAATTCATATTTATAATTT
TCGCATTAAACGTAATCAATTTTGCCGTAGTTGCCCCCCATTGGTTTTCC
TTTCCTTCCATCGAAAATAAATTAAATATATATCCAACTGAGCGGATTTT
GATCAGCAGAAAAAAAAAAAAAAAA

RE52196.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 21:31:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-RB 1480 CG14207-RB 50..1306 1..1257 6285 100 Plus
CG14207-RA 1504 CG14207-RA 572..1330 499..1257 3795 100 Plus
CG14207.a 1025 CG14207.a 158..916 499..1257 3795 100 Plus
CG14207-RA 1504 CG14207-RA 101..579 1..479 2395 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 15:07:41
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 19499487..19500063 681..1257 2870 99.8 Plus
chrX 22417052 chrX 19494030..19494505 1..476 2380 100 Plus
chrX 22417052 chrX 19499317..19499417 583..683 505 100 Plus
chrX 22417052 chrX 19499170..19499255 501..586 430 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 15:07:39
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19610695..19611271 681..1257 2885 100 Plus
X 23542271 X 19605207..19605682 1..476 2380 100 Plus
X 23542271 X 19610525..19610625 583..683 505 100 Plus
X 23542271 X 19610378..19610463 501..586 430 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:47:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 19618793..19619369 681..1257 2885 100 Plus
X 23527363 X 19613305..19613780 1..476 2380 100 Plus
X 23527363 X 19618623..19618723 583..683 505 100 Plus
X 23527363 X 19618476..19618561 501..586 430 100 Plus
X 23527363 X 19617559..19617587 475..503 145 100 Plus
Blast to na_te.dros performed on 2019-03-15 15:07:39 has no hits.

RE52196.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 15:08:33 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 19499958..19500064 1152..1259 98   Plus
chrX 19494030..19494505 1..476 92 -> Plus
chrX 19498255..19498281 477..503 100 -> Plus
chrX 19499173..19499254 504..585 100 -> Plus
chrX 19499320..19499415 586..681 100 -> Plus
chrX 19499488..19499899 682..1093 100 == Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2009-10-19 18:09:51 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 1..579 298..876 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 21:46:44 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
HspB8-RB 1..579 298..876 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 01:03:46 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 1..579 298..876 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:28:02 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 1..579 298..876 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-05-29 16:12:11 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 50..1228 1..1179 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 21:46:43 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
HspB8-RB 50..1228 1..1179 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:03:46 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 9..1266 1..1259 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:28:02 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RB 9..1266 1..1259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:33 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
X 19605207..19605682 1..476 100 -> Plus
X 19609463..19609489 477..503 100 -> Plus
X 19610381..19610462 504..585 100 -> Plus
X 19610528..19610623 586..681 100 -> Plus
X 19610696..19611272 682..1259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:33 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
X 19605207..19605682 1..476 100 -> Plus
X 19609463..19609489 477..503 100 -> Plus
X 19610381..19610462 504..585 100 -> Plus
X 19610528..19610623 586..681 100 -> Plus
X 19610696..19611272 682..1259 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 15:08:33 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
X 19605207..19605682 1..476 100 -> Plus
X 19609463..19609489 477..503 100 -> Plus
X 19610381..19610462 504..585 100 -> Plus
X 19610528..19610623 586..681 100 -> Plus
X 19610696..19611272 682..1259 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:03:46 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19499240..19499715 1..476 100 -> Plus
arm_X 19503496..19503522 477..503 100 -> Plus
arm_X 19504414..19504495 504..585 100 -> Plus
arm_X 19504561..19504656 586..681 100 -> Plus
arm_X 19504729..19505305 682..1259 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 19:22:05 Download gff for RE52196.complete
Subject Subject Range Query Range Percent Splice Strand
X 19613305..19613780 1..476 100 -> Plus
X 19617561..19617587 477..503 100 -> Plus
X 19618479..19618560 504..585 100 -> Plus
X 19618626..19618721 586..681 100 -> Plus
X 19618794..19619370 682..1259 99   Plus

RE52196.pep Sequence

Translation from 297 to 875

> RE52196.pep
MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN
REANFFESTSSTKKTTTTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGD
NKVLKLRFDVSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREF
LLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*

RE52196.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 13:34:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF20408-PA 193 GF20408-PA 1..193 1..192 996 99.5 Plus
Dana\GF11829-PA 187 GF11829-PA 75..156 100..180 191 45.1 Plus
Dana\GF23739-PA 205 GF23739-PA 65..161 82..178 164 35.7 Plus
Dana\GF10691-PA 190 GF10691-PA 71..146 104..178 160 42.1 Plus
Dana\GF10323-PA 155 GF10323-PA 48..136 89..181 153 39.4 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 13:34:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19234-PA 192 GG19234-PA 1..192 1..192 1008 100 Plus
Dere\GG20009-PA 187 GG20009-PA 75..161 100..185 192 43.7 Plus
Dere\GG14046-PA 445 GG14046-PA 126..201 104..178 177 42.1 Plus
Dere\GG14047-PA 208 GG14047-PA 74..164 88..178 160 39.1 Plus
Dere\GG14448-PA 154 GG14448-PA 47..140 89..186 150 38.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 13:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24938-PA 193 GH24938-PA 1..193 1..192 986 97.9 Plus
Dgri\GH21555-PA 189 GH21555-PA 77..171 100..191 183 41.1 Plus
Dgri\GH14699-PA 605 GH14699-PA 204..274 104..173 172 42.3 Plus
Dgri\GH23707-PA 185 GH23707-PA 22..148 55..179 166 30.5 Plus
Dgri\GH16863-PA 185 GH16863-PA 22..148 55..179 166 30.5 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-PB 192 CG14207-PB 1..192 1..192 965 100 Plus
CG14207-PD 183 CG14207-PD 1..183 1..192 902 95.3 Plus
CG14207-PA 183 CG14207-PA 1..183 1..192 902 95.3 Plus
CG14207-PC 154 CG14207-PC 10..154 54..192 650 91.7 Plus
l(2)efl-PC 187 CG4533-PC 75..161 100..185 194 43.7 Plus
l(2)efl-PA 187 CG4533-PA 75..161 100..185 194 43.7 Plus
Hsp27-PB 213 CG4466-PB 95..165 109..178 169 46.5 Plus
Hsp27-PA 213 CG4466-PA 95..165 109..178 169 46.5 Plus
Hsp67Ba-PA 445 CG4167-PA 128..202 105..178 169 42.7 Plus
CG4461-PA 200 CG4461-PA 94..189 100..189 161 36.5 Plus
Hsp26-PB 208 CG4183-PB 94..164 109..178 156 45.1 Plus
Hsp26-PA 208 CG4183-PA 94..164 109..178 156 45.1 Plus
Hsp23-PB 186 CG4463-PB 76..146 109..178 151 42.3 Plus
Hsp23-PA 186 CG4463-PA 76..146 109..178 151 42.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 13:34:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11114-PA 193 GI11114-PA 1..193 1..192 981 97.9 Plus
Dmoj\GI19527-PA 189 GI19527-PA 77..158 100..180 189 45.1 Plus
Dmoj\GI12246-PA 558 GI12246-PA 164..236 104..175 168 41.1 Plus
Dmoj\GI12245-PA 198 GI12245-PA 73..185 89..187 167 35.4 Plus
Dmoj\GI13089-PA 193 GI13089-PA 81..170 105..191 166 40 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 13:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL27055-PA 193 GL27055-PA 1..193 1..192 996 99.5 Plus
Dper\GL17594-PA 202 GL17594-PA 75..156 100..180 189 45.1 Plus
Dper\GL22632-PA 204 GL22632-PA 71..166 88..192 170 37 Plus
Dper\GL18037-PA 163 GL18037-PA 56..144 89..181 157 39.4 Plus
Dper\GL22446-PA 184 GL22446-PA 71..146 104..178 154 40.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 13:34:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12823-PA 193 GA12823-PA 1..193 1..192 996 99.5 Plus
Dpse\GA18238-PA 187 GA18238-PA 75..156 100..180 190 45.1 Plus
Dpse\GA18011-PA 204 GA18011-PA 71..166 88..192 170 37 Plus
Dpse\GA20330-PA 154 GA20330-PA 47..135 89..181 157 39.4 Plus
Dpse\GA18202-PA 184 GA18202-PA 71..146 104..178 152 40.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 13:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22970-PA 192 GM22970-PA 1..192 1..192 1008 100 Plus
Dsec\GM15521-PA 187 GM15521-PA 75..161 100..185 192 43.7 Plus
Dsec\GM24880-PA 403 GM24880-PA 127..202 104..178 174 40.8 Plus
Dsec\GM24881-PA 211 GM24881-PA 74..164 88..178 159 39.1 Plus
Dsec\GM25000-PA 154 GM25000-PA 47..135 89..181 149 39.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 13:34:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD24875-PA 115 GD24875-PA 1..115 78..192 596 99.1 Plus
Dsim\GD17451-PA 98 GD17451-PA 1..68 1..68 353 100 Plus
Dsim\GD25025-PA 187 GD25025-PA 75..161 100..185 192 43.7 Plus
Dsim\GD12932-PA 391 GD12932-PA 73..148 104..178 174 40.8 Plus
Dsim\GD12933-PA 211 GD12933-PA 74..164 88..178 159 39.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 13:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15970-PA 193 GJ15970-PA 1..193 1..192 987 97.9 Plus
Dvir\GJ21096-PA 189 GJ21096-PA 77..171 100..191 195 44.2 Plus
Dvir\GJ11478-PA 532 GJ11478-PA 173..243 104..173 174 42.3 Plus
Dvir\GJ11477-PA 199 GJ11477-PA 91..186 98..187 168 36.5 Plus
Dvir\GJ13836-PA 214 GJ13836-PA 91..166 104..178 167 43.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 13:34:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK25198-PA 194 GK25198-PA 1..194 1..192 977 97.4 Plus
Dwil\GK23172-PA 187 GK23172-PA 75..156 100..180 187 43.9 Plus
Dwil\GK16565-PA 471 GK16565-PA 141..213 104..175 162 41.1 Plus
Dwil\GK17636-PA 186 GK17636-PA 70..145 104..178 151 39.5 Plus
Dwil\GK21206-PA 155 GK21206-PA 48..136 89..181 149 38.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 13:34:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE15853-PA 192 GE15853-PA 1..192 1..192 1008 100 Plus
Dyak\GE11545-PA 187 GE11545-PA 75..161 100..185 193 43.7 Plus
Dyak\GE21250-PA 208 GE21250-PA 74..164 88..178 161 39.1 Plus
Dyak\GE21249-PA 448 GE21249-PA 126..195 104..172 159 40 Plus
Dyak\GE21638-PA 154 GE21638-PA 47..135 89..181 151 39.4 Plus

RE52196.hyp Sequence

Translation from 297 to 875

> RE52196.hyp
MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN
REANFFESTSSTKKTTTTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGD
NKVLKLRFDVSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREF
LLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*

RE52196.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-PB 192 CG14207-PB 1..192 1..192 965 100 Plus
CG14207-PD 183 CG14207-PD 1..183 1..192 902 95.3 Plus
CG14207-PA 183 CG14207-PA 1..183 1..192 902 95.3 Plus
CG14207-PC 154 CG14207-PC 10..154 54..192 650 91.7 Plus
l(2)efl-PC 187 CG4533-PC 75..161 100..185 194 43.7 Plus