BDGP Sequence Production Resources |
Search the DGRC for RE52196
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 521 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG14207-RB |
Protein status: | RE52196.pep: gold |
Sequenced Size: | 1275 |
Gene | Date | Evidence |
---|---|---|
CG14207 | 2009-03-31 | Manual selection by Sue Celniker |
1275 bp assembled on 2009-05-29
GenBank Submission: BT088760.1
> RE52196.complete AGTTCAGAAATTGAAACGCGGCTATCTGTGCGATACGTCCAACCGAAATC ACACACTTGAACGTCTTGAGTTTCGAATACATATAGAAAACCCATCGAGT TCCCTTTTTTTTTGGTTGCTCCGTCGATTAGCAAGTGAACAAGCTCGAAA GCGCGTTGAGCAGAACAGAACAGAACAGAGAATAATAGAACGGTATACAG TATATACAGTATATACGGTATACAGTGTACAGCGAAGAGATTGGAGATTC CATCTAGCGAAGCAACCACCAAATAAACCACCACAAACAGCACAACAATG GCCGAGGCTAACAAGAGGAATATCCCCATCAAGCTGGGCGACTTCAGCGT CATCGACACGGAGTTCAGCAACATCCGCGAGCGCTTCGACTCCGAGATGC GCAAAATGGAGGAGGAGATGGCCAAGTTCCGTCACGAGCTGATGAACCGC GAGGCGAACTTCTTCGAGTCCACCAGCTCTACTAAAAAAACAACAACTAC CAGCTCAACGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGA ACTACGTCTCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAAC AAAGTGCTGAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAAT TGTTGTGAAAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGG AGAAGTCGGACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTG CTGCCCAAGGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGA CGGAGTCCTGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGA CACTGATTCCCATTGCGCACAAGTGAAGGCCAGCCCAGTTGTCCAGTTGT CCAGCTATCCAGTCACCATGGTCCCAAGCCGGTTGAGGAGCAATAGGCGC AGGAGGAGCAGGAGGAGTGCGAGCTGCTGCCGATCAGATTAAATCCATAC ACACATTGAGTTTAATCCAATCCTATCTAAATGATTAATTTTTTTGGTTC TGACTTAAAGCTAAACTATGTTACTGACGTACTACTCATTAACTTAAATA TAATTGAAATTATTATTAAATTTGATTAATTTAATTCATATTTATAATTT TCGCATTAAACGTAATCAATTTTGCCGTAGTTGCCCCCCATTGGTTTTCC TTTCCTTCCATCGAAAATAAATTAAATATATATCCAACTGAGCGGATTTT GATCAGCAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14207-RB | 1480 | CG14207-RB | 50..1306 | 1..1257 | 6285 | 100 | Plus |
CG14207-RA | 1504 | CG14207-RA | 572..1330 | 499..1257 | 3795 | 100 | Plus |
CG14207.a | 1025 | CG14207.a | 158..916 | 499..1257 | 3795 | 100 | Plus |
CG14207-RA | 1504 | CG14207-RA | 101..579 | 1..479 | 2395 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chrX | 22417052 | chrX | 19499487..19500063 | 681..1257 | 2870 | 99.8 | Plus |
chrX | 22417052 | chrX | 19494030..19494505 | 1..476 | 2380 | 100 | Plus |
chrX | 22417052 | chrX | 19499317..19499417 | 583..683 | 505 | 100 | Plus |
chrX | 22417052 | chrX | 19499170..19499255 | 501..586 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23542271 | X | 19610695..19611271 | 681..1257 | 2885 | 100 | Plus |
X | 23542271 | X | 19605207..19605682 | 1..476 | 2380 | 100 | Plus |
X | 23542271 | X | 19610525..19610625 | 583..683 | 505 | 100 | Plus |
X | 23542271 | X | 19610378..19610463 | 501..586 | 430 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
X | 23527363 | X | 19618793..19619369 | 681..1257 | 2885 | 100 | Plus |
X | 23527363 | X | 19613305..19613780 | 1..476 | 2380 | 100 | Plus |
X | 23527363 | X | 19618623..19618723 | 583..683 | 505 | 100 | Plus |
X | 23527363 | X | 19618476..19618561 | 501..586 | 430 | 100 | Plus |
X | 23527363 | X | 19617559..19617587 | 475..503 | 145 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 19499958..19500064 | 1152..1259 | 98 | Plus | |
chrX | 19494030..19494505 | 1..476 | 92 | -> | Plus |
chrX | 19498255..19498281 | 477..503 | 100 | -> | Plus |
chrX | 19499173..19499254 | 504..585 | 100 | -> | Plus |
chrX | 19499320..19499415 | 586..681 | 100 | -> | Plus |
chrX | 19499488..19499899 | 682..1093 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 1..579 | 298..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HspB8-RB | 1..579 | 298..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 1..579 | 298..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 1..579 | 298..876 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 50..1228 | 1..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
HspB8-RB | 50..1228 | 1..1179 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 9..1266 | 1..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG14207-RB | 9..1266 | 1..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19605207..19605682 | 1..476 | 100 | -> | Plus |
X | 19609463..19609489 | 477..503 | 100 | -> | Plus |
X | 19610381..19610462 | 504..585 | 100 | -> | Plus |
X | 19610528..19610623 | 586..681 | 100 | -> | Plus |
X | 19610696..19611272 | 682..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19605207..19605682 | 1..476 | 100 | -> | Plus |
X | 19609463..19609489 | 477..503 | 100 | -> | Plus |
X | 19610381..19610462 | 504..585 | 100 | -> | Plus |
X | 19610528..19610623 | 586..681 | 100 | -> | Plus |
X | 19610696..19611272 | 682..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19605207..19605682 | 1..476 | 100 | -> | Plus |
X | 19609463..19609489 | 477..503 | 100 | -> | Plus |
X | 19610381..19610462 | 504..585 | 100 | -> | Plus |
X | 19610528..19610623 | 586..681 | 100 | -> | Plus |
X | 19610696..19611272 | 682..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 19499240..19499715 | 1..476 | 100 | -> | Plus |
arm_X | 19503496..19503522 | 477..503 | 100 | -> | Plus |
arm_X | 19504414..19504495 | 504..585 | 100 | -> | Plus |
arm_X | 19504561..19504656 | 586..681 | 100 | -> | Plus |
arm_X | 19504729..19505305 | 682..1259 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 19613305..19613780 | 1..476 | 100 | -> | Plus |
X | 19617561..19617587 | 477..503 | 100 | -> | Plus |
X | 19618479..19618560 | 504..585 | 100 | -> | Plus |
X | 19618626..19618721 | 586..681 | 100 | -> | Plus |
X | 19618794..19619370 | 682..1259 | 99 | Plus |
Translation from 297 to 875
> RE52196.pep MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN REANFFESTSSTKKTTTTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGD NKVLKLRFDVSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREF LLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF20408-PA | 193 | GF20408-PA | 1..193 | 1..192 | 996 | 99.5 | Plus |
Dana\GF11829-PA | 187 | GF11829-PA | 75..156 | 100..180 | 191 | 45.1 | Plus |
Dana\GF23739-PA | 205 | GF23739-PA | 65..161 | 82..178 | 164 | 35.7 | Plus |
Dana\GF10691-PA | 190 | GF10691-PA | 71..146 | 104..178 | 160 | 42.1 | Plus |
Dana\GF10323-PA | 155 | GF10323-PA | 48..136 | 89..181 | 153 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19234-PA | 192 | GG19234-PA | 1..192 | 1..192 | 1008 | 100 | Plus |
Dere\GG20009-PA | 187 | GG20009-PA | 75..161 | 100..185 | 192 | 43.7 | Plus |
Dere\GG14046-PA | 445 | GG14046-PA | 126..201 | 104..178 | 177 | 42.1 | Plus |
Dere\GG14047-PA | 208 | GG14047-PA | 74..164 | 88..178 | 160 | 39.1 | Plus |
Dere\GG14448-PA | 154 | GG14448-PA | 47..140 | 89..186 | 150 | 38.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24938-PA | 193 | GH24938-PA | 1..193 | 1..192 | 986 | 97.9 | Plus |
Dgri\GH21555-PA | 189 | GH21555-PA | 77..171 | 100..191 | 183 | 41.1 | Plus |
Dgri\GH14699-PA | 605 | GH14699-PA | 204..274 | 104..173 | 172 | 42.3 | Plus |
Dgri\GH23707-PA | 185 | GH23707-PA | 22..148 | 55..179 | 166 | 30.5 | Plus |
Dgri\GH16863-PA | 185 | GH16863-PA | 22..148 | 55..179 | 166 | 30.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14207-PB | 192 | CG14207-PB | 1..192 | 1..192 | 965 | 100 | Plus |
CG14207-PD | 183 | CG14207-PD | 1..183 | 1..192 | 902 | 95.3 | Plus |
CG14207-PA | 183 | CG14207-PA | 1..183 | 1..192 | 902 | 95.3 | Plus |
CG14207-PC | 154 | CG14207-PC | 10..154 | 54..192 | 650 | 91.7 | Plus |
l(2)efl-PC | 187 | CG4533-PC | 75..161 | 100..185 | 194 | 43.7 | Plus |
l(2)efl-PA | 187 | CG4533-PA | 75..161 | 100..185 | 194 | 43.7 | Plus |
Hsp27-PB | 213 | CG4466-PB | 95..165 | 109..178 | 169 | 46.5 | Plus |
Hsp27-PA | 213 | CG4466-PA | 95..165 | 109..178 | 169 | 46.5 | Plus |
Hsp67Ba-PA | 445 | CG4167-PA | 128..202 | 105..178 | 169 | 42.7 | Plus |
CG4461-PA | 200 | CG4461-PA | 94..189 | 100..189 | 161 | 36.5 | Plus |
Hsp26-PB | 208 | CG4183-PB | 94..164 | 109..178 | 156 | 45.1 | Plus |
Hsp26-PA | 208 | CG4183-PA | 94..164 | 109..178 | 156 | 45.1 | Plus |
Hsp23-PB | 186 | CG4463-PB | 76..146 | 109..178 | 151 | 42.3 | Plus |
Hsp23-PA | 186 | CG4463-PA | 76..146 | 109..178 | 151 | 42.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11114-PA | 193 | GI11114-PA | 1..193 | 1..192 | 981 | 97.9 | Plus |
Dmoj\GI19527-PA | 189 | GI19527-PA | 77..158 | 100..180 | 189 | 45.1 | Plus |
Dmoj\GI12246-PA | 558 | GI12246-PA | 164..236 | 104..175 | 168 | 41.1 | Plus |
Dmoj\GI12245-PA | 198 | GI12245-PA | 73..185 | 89..187 | 167 | 35.4 | Plus |
Dmoj\GI13089-PA | 193 | GI13089-PA | 81..170 | 105..191 | 166 | 40 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL27055-PA | 193 | GL27055-PA | 1..193 | 1..192 | 996 | 99.5 | Plus |
Dper\GL17594-PA | 202 | GL17594-PA | 75..156 | 100..180 | 189 | 45.1 | Plus |
Dper\GL22632-PA | 204 | GL22632-PA | 71..166 | 88..192 | 170 | 37 | Plus |
Dper\GL18037-PA | 163 | GL18037-PA | 56..144 | 89..181 | 157 | 39.4 | Plus |
Dper\GL22446-PA | 184 | GL22446-PA | 71..146 | 104..178 | 154 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12823-PA | 193 | GA12823-PA | 1..193 | 1..192 | 996 | 99.5 | Plus |
Dpse\GA18238-PA | 187 | GA18238-PA | 75..156 | 100..180 | 190 | 45.1 | Plus |
Dpse\GA18011-PA | 204 | GA18011-PA | 71..166 | 88..192 | 170 | 37 | Plus |
Dpse\GA20330-PA | 154 | GA20330-PA | 47..135 | 89..181 | 157 | 39.4 | Plus |
Dpse\GA18202-PA | 184 | GA18202-PA | 71..146 | 104..178 | 152 | 40.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22970-PA | 192 | GM22970-PA | 1..192 | 1..192 | 1008 | 100 | Plus |
Dsec\GM15521-PA | 187 | GM15521-PA | 75..161 | 100..185 | 192 | 43.7 | Plus |
Dsec\GM24880-PA | 403 | GM24880-PA | 127..202 | 104..178 | 174 | 40.8 | Plus |
Dsec\GM24881-PA | 211 | GM24881-PA | 74..164 | 88..178 | 159 | 39.1 | Plus |
Dsec\GM25000-PA | 154 | GM25000-PA | 47..135 | 89..181 | 149 | 39.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24875-PA | 115 | GD24875-PA | 1..115 | 78..192 | 596 | 99.1 | Plus |
Dsim\GD17451-PA | 98 | GD17451-PA | 1..68 | 1..68 | 353 | 100 | Plus |
Dsim\GD25025-PA | 187 | GD25025-PA | 75..161 | 100..185 | 192 | 43.7 | Plus |
Dsim\GD12932-PA | 391 | GD12932-PA | 73..148 | 104..178 | 174 | 40.8 | Plus |
Dsim\GD12933-PA | 211 | GD12933-PA | 74..164 | 88..178 | 159 | 39.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15970-PA | 193 | GJ15970-PA | 1..193 | 1..192 | 987 | 97.9 | Plus |
Dvir\GJ21096-PA | 189 | GJ21096-PA | 77..171 | 100..191 | 195 | 44.2 | Plus |
Dvir\GJ11478-PA | 532 | GJ11478-PA | 173..243 | 104..173 | 174 | 42.3 | Plus |
Dvir\GJ11477-PA | 199 | GJ11477-PA | 91..186 | 98..187 | 168 | 36.5 | Plus |
Dvir\GJ13836-PA | 214 | GJ13836-PA | 91..166 | 104..178 | 167 | 43.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK25198-PA | 194 | GK25198-PA | 1..194 | 1..192 | 977 | 97.4 | Plus |
Dwil\GK23172-PA | 187 | GK23172-PA | 75..156 | 100..180 | 187 | 43.9 | Plus |
Dwil\GK16565-PA | 471 | GK16565-PA | 141..213 | 104..175 | 162 | 41.1 | Plus |
Dwil\GK17636-PA | 186 | GK17636-PA | 70..145 | 104..178 | 151 | 39.5 | Plus |
Dwil\GK21206-PA | 155 | GK21206-PA | 48..136 | 89..181 | 149 | 38.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE15853-PA | 192 | GE15853-PA | 1..192 | 1..192 | 1008 | 100 | Plus |
Dyak\GE11545-PA | 187 | GE11545-PA | 75..161 | 100..185 | 193 | 43.7 | Plus |
Dyak\GE21250-PA | 208 | GE21250-PA | 74..164 | 88..178 | 161 | 39.1 | Plus |
Dyak\GE21249-PA | 448 | GE21249-PA | 126..195 | 104..172 | 159 | 40 | Plus |
Dyak\GE21638-PA | 154 | GE21638-PA | 47..135 | 89..181 | 151 | 39.4 | Plus |
Translation from 297 to 875
> RE52196.hyp MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN REANFFESTSSTKKTTTTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGD NKVLKLRFDVSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREF LLPKGVNPESIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG14207-PB | 192 | CG14207-PB | 1..192 | 1..192 | 965 | 100 | Plus |
CG14207-PD | 183 | CG14207-PD | 1..183 | 1..192 | 902 | 95.3 | Plus |
CG14207-PA | 183 | CG14207-PA | 1..183 | 1..192 | 902 | 95.3 | Plus |
CG14207-PC | 154 | CG14207-PC | 10..154 | 54..192 | 650 | 91.7 | Plus |
l(2)efl-PC | 187 | CG4533-PC | 75..161 | 100..185 | 194 | 43.7 | Plus |