Clone RE52337 Report

Search the DGRC for RE52337

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:523
Well:37
Vector:pFlc-1
Associated Gene/TranscriptCG32111-RA
Protein status:RE52337.pep: wuzgold
Sequenced Size:5228

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10601 2002-01-01 Sim4 clustering to Release 2
CG32111 2003-01-01 Sim4 clustering to Release 3
CG32111 2004-08-12 Blastp of sequenced clone
CG32111 2008-04-29 Release 5.5 accounting
CG32111 2008-08-15 Release 5.9 accounting
CG32111 2008-12-18 5.12 accounting

Clone Sequence Records

RE52337.complete Sequence

5228 bp (5228 high quality bases) assembled on 2004-08-12

GenBank Submission: BT021937

> RE52337.complete
AGTATGCGCTCGAACTCGGTAATGCGCACATCATGGGCGAGAGTGGGCGC
GCAAGGCCGAACGAACAAACAGGTTGTGTACCACTGGGCGGTGGGTGGTG
GTGGGCGGTATTTGGAGGTGGAGGTATTAGCCTGGAGGTGGGTGCGTTTT
GTGGCAAATATCCGAAAGTTGTGAATAACCCAAAAGTGCGTGCCCCTGAT
TGGGCCAAGGTGGGAGTACCATATCAGTCAGATCAACGATTCCACACGGC
GTAAACAAACACACACACACACCACAGAAACAGAGTGCCAAAGTTTACTG
TCACGTGCTTGTCAACAACGTCTTGGCGTTTTATAACGCAACGCCCTGAC
CCCGGACACGATGAAGCTTTACAAGTGACCCCCGGTTCCTCCTGGACTTT
GCACCCGGCCAAAGGCAACTACTACCGCCACTAACTGGGCTGAATTGAAC
TCAAGTCCCACAGCGCTACCATCATACTTTTAGGACGATGCCAGGACACG
GCCTGACGGCATTTCCTACAGGGCACGAAGGACATACCCATCGCCATCCT
TGTGCACATCCACATCCTCGCCTACATCGAATGAGAGCGCCCACAAGGGA
TACAGTTGTTAACGTGGCCAAGGAGCAGCGACTATGGCGGGGACAAAAAC
ACAAACATGGTTGCCGCAGGACGCTTGCAGTTGAAGGAGCAGAGCACTTT
ATGTGCATATAATGTCCGCTCTCACCCGAAGCACACACCCACACTCGCAC
ACACACTCGCGCACACACACACACACGCGGAGAGGCAGGACCCTTTGAGC
ACGGTGTCGGCCAAGTTGCGGGGAATTGTTAATATTGTCTGGGCCTGTAA
GCAGCATTTACATGCTGGCCGACACCACGTACTACATACGTCCTGCCTGA
TGGACGGTCTCCGGGATACGGAATCCTTTCCGTACGGATGATGCTCCGGC
TTTAAGTAGGCCCGCCTGGTAACAGATATTGTTTTAAAAATATGTACATC
CTTGCATTTTGCAGATGTTGAATTAACCGACTATACCCGACAGTTTTCAT
TAGAAAATGGAGGATGGACACAAGTGCCGGAGTGGCCGGTTCTACAAATC
CCAGTGCACTCCATTCATTTCGACACCCTGTCCAGACGAAACTCCGGATT
TTGGCTTGGCCCACTTGACCGGGCAAAAACAGTGGACCAACTGATAATGA
TGCTGTTGGCGACTTTGTGTTTGCTCATGCCGGTAGCCTTGTGCCCAGGT
CTTTGGTCCTTGGTCCTTGTTACTGGGTCCTTGGTCCTCGGTCCTTGGTC
CATGCAGTGGCTGGCTTTGATGTTTCGCCAGGATGATGAATTATATTTGA
CATCTATGTGCTTGGGCGGCGGTCCTCCTCCTCCTGCTCCGTCGTTGCTA
ACATGTGTGTACCCTGCCACATTTGATGCCACTCAAACTACAAATACATA
CGTGTGCATGCGCACCAAAAAACCACCCAGTTATCCATGCACCCACCCAC
CTACACTCGCGTCTGATGAGAGCCGCACTTGGATATGTTTATTTTACTGT
CAAAACATTAAAGTAAACTCCCGCCGATGCCGCCGCACGGGGTTGATTGT
TATCAGGGGGCGGTGTCGACAGCGTTGTACCTATGCGAGGGTGGAAAACC
GATGGAAGGACCATGCCGGGTACTTCGTCCTCTTGGCCACCTTCGGTTTG
ACTCCGTAGACAAGTCTATTTGCATATGTTGACGGCATACTCTAACCAGA
TCCTGGTGGATTTCCTGCTTAACGGCCGTGGCCATCACAACAGCCATCCC
TTTGCACAGGACCTTCACACATGCGGCTGTGTGGCATGCCTTTTTGACAA
CTCATAACAATTACTCATCATAAACAAAGACGTTTTTTATGCGAGAAGAT
CGTGTGAAAAAGAAAAGCGAGATGTGGAAAGCCCAAATGCCGATGCATTC
TCGATTCGTGGCATTAAGACAAAAGTAAACTTGATTTTGGTATGAAATTG
ATTCATTCATTTTCGATCCATTGAGTCAGATTCTTATCCGATGGATGAGC
CGGTCAGTATCACCACTTCCAACTGTGTGCACATCCAACAGGTAGTCGAA
CCAGACAAACTGTCTCCACTTGCAATGGAGTCTCGTTTCCATCCTCTTCG
CCCCTTTCAACTAATATTTGACTGGGAATTCAGCGAGAGCCGGGAATCCT
TTGATGGCAGGATATCGTCATTCAGCTTCGGAAAAATAATTTATTCGATA
AATTTCGATGTTTCCATAGACCATTATGTCAGCTAGAGAACATGATATCT
CACCAAACAACTGTTGAATGATTCTTGATGGACTGGATGAAAGCAACTGG
ATTTAATTATGTTAATTTGTAATTTTAATATGTTATCAAAAAAAAAACAT
CGAAGTAGGATGGAGTTTTACTGATGCGCTTTCCAATCGAATCGAATTTG
GTTGATTTTTATTAGCATTCTTATTGGATTACTTTTTGTAAAAACACATA
TGATTGCATAATATAATTGTATTAAATGTGTATTTTTGTAAACCTTATAT
AGTTTAAACATTTAAACGAACAAATTGTTAAACATGGCCAATGATTACAT
GCTAAACCAAAAATTTTTGCTGTATTTGGACAATTGTATTTATAGGTACT
GATTAGTTGATATTAATATTAAACATAAACAAGAAACATGATGTTATTCA
TAAATTCAATCACATCCAAATGACCTATCGAAATTAAATATATGTTACAA
GATATAACAATGTGAAATTGTACTAAAATTGCAATGGTTTTCAATAAGTT
GACTCACAGGAGAAAATAATGTATACATTGGAATTTTATAAGAACATATT
GTTCACAGCTCTACGCTTTTTTGAGGATTATCATATATTACAAAAAAAGA
ATTATTGTCTTTAATTTTATATAAAATTTTTAAAATATTCATAATCAAAT
ATATGTTGTTGTTAGTTTCATGAACACAATGAAAAAAAAAACAGAAAAAT
TCCCATCCAATAATAATTTAAAATATATTGGAATAATTACTTTCACTCAA
TTTATTAAGTGATCAAGACATCTTATGCAGAGATCTGATTTTAATTTAGA
GTTCAGTTTCCGATCTTAACAATTAAATAAATTACTTTGCTAATTATTTA
ACTCGATCCACTTAGTTAAAGATGATCACGCATACGCAACCATTGCGCAT
TAATTTACACATATGCCTAAGAGTATGCAACGTATTCTTTTATGCACTTT
CTAAAGCATACTTATGTGGTTAATTACGTGCTGCAGCATATTTTCTTTCC
CATAAATGTCTATCGCAGTTTAGGCGTGATCTCAAATTTACTTTTGTATA
AATCAATAACTATTCTATTATCGATAAGATGTTGTTCAAAAGGGCTCTCT
TCTTAGTCGATCATAGAAAGTGATCATAAACTTGTATATCATGTAACATA
CATTAGAGAAAAGAATTCGTCCACTGCCAACATAAAGTCATAGATACTCA
AAACTGTTAAAAAAAAGTATCATTTAAATTGTTAAATACTGTAATTCTTT
TAACATTGCATTTAAATTATAAGATCAAATTTACCCAATTTTAAATATAA
TCGGCTATAGTATCTTAAGTTCTTTTAAATGCTTGTGACTTAAAATTTCG
ATTTCACACAGTAACTTTTGTGATTTAAATCTTTAATTAGGCTATTAGGT
ATTACAAGTTGAGTTAACAAGAGTTATGCGAATTATATATTCATTATTTG
ATAACAATTTTATTGATACATCACATACAATACGTCGTAAAGCTCAAATA
TTTTAAAGACAACTAATTTGTAGGGGGACAATGCTCAATCACCTTAATAC
CCACAATAAATTTGATCCACTTATTGTGCATTGTTATAAGTCATAATAAC
CCGAAACCGAGCTGGTCGATAAAGGACGGCTGCGAATATATTTATTGTTT
TCCGCTTACTACCTGAATACGAATTAGCATTGGGACCCACCCCTCCGCCC
CTGCCAGCCATATACATATGTAGAAACCTATCTGTATACGAAAGTAATGT
CTTGAGCAGACCCTGGATCGTGCCCCATAAATCATGCCAAACTGCGTTTG
GGTATAGAAAGTCAAAGTAAACTGCCATCACTTAAAGTCATTCAAGCATT
TATTTATGTCAAAACATTGTCCGCTTAGCTGCTGCGAACCTTTTGACAGT
CCCCGAGGAGGTAGGGATTCGGGATCGGAATCGGGATTGGGATCGAGAGT
CGGAGGGGTCAGTTGGCCAGTCGAATGTATAACTCAATTATAGGCGGCTG
TGTGCTCACCTCGCAGCGGGGTGTCGGCGCATTAGCCACTCCTCCATATC
CTGGCCCTCAGCCCTCGGTTCGCCGTGAGTTCCCTTTTTAGCGCTAGACC
GGATCGGATAATGCACATGCGGCGATCGGGGTCATTGCGGTTTTCGGGAT
CTCCAGTCTGCAGTCCCGAATCTGCTGGACGAGATAACCCCGACTAGACT
GCATAGATGTCATTAGAAACCGGGCACCAACACGATCCTCAATGAAATAA
CCTCTCTGTTAGTTTGTCTTTATTATCTCTTCCCTGGAGGGGGGATTCCT
GTGTGGCCCGCATCGGATGGCACATTGTGACCACGATCGACCTCCAAGGT
ACAGGCCTCCCTGTACATGATTCTGTTTAACGAGAACAATGTTCTTGCAA
TTCTGCAAACGATGGCCACACCGCCGTTGCTTCGTTGGCGATCGCCTTTA
CTTACAGTTTCTGGACCGGATCTGGGGAGGATCGGGGCGATCCGCAACCA
GGTGAGGGGATAACAACCACACGATGGCACCGAATCGTGCAAAAGTACAG
CGACGGATGGCAGGTGGCGCCGATGCGAATTTGAATATGGAATGTCAGTC
GGGCATATGGCTAGCAAATTTGTATTGTGTGGGGGGAAACCTTGTTATGG
GCTAAAAATAGGGATAACACACTCAAATTTACATAAAATTTATAAACTTC
TGTTATCAATTTGTAGGGCCAGCTTTCTTATTGGATTACATTTACCTTTC
AATCTGTTTATATTTATATTTTATAGCAAAAGAACTAAGATTTAAAGCTT
GTCCTTACACTTATACTTACTTGTTACTTACACTTACACATAATCATACT
TCATAAATATTCCATTCCACATTAATTATCAGAAGACATAAAATAAATTA
TTTAAAAGCTCTAAAAAAAAAAAAAAAA

RE52337.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 16:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG32111-RA 5212 CG32111-RA 1..5212 1..5212 26000 99.9 Plus
nc_12276.a 460 nc_12276.a 245..460 1921..2136 1065 99.5 Plus
nc_12276.a 460 nc_12276.a 1..170 786..955 850 100 Plus
nc_12276.a 460 nc_12276.a 171..245 1015..1089 375 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 12635838..12638755 2297..5212 14390 99.6 Plus
chr3L 24539361 chr3L 12632528..12633361 1089..1921 4075 99.5 Plus
chr3L 24539361 chr3L 12623821..12624443 473..1089 2960 98.7 Plus
chr3L 24539361 chr3L 12618420..12618891 1..472 2330 99.6 Plus
chr3L 24539361 chr3L 12635282..12635522 1920..2160 1175 99.2 Plus
chr3L 24539361 chr3L 12635595..12635688 2161..2263 315 89.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12645362..12648280 2294..5212 14580 100 Plus
3L 28110227 3L 12642046..12642878 1089..1921 4150 99.9 Plus
3L 28110227 3L 12633329..12633945 473..1089 3070 99.8 Plus
3L 28110227 3L 12627936..12628407 1..472 2360 100 Plus
3L 28110227 3L 12644800..12645040 1920..2160 1190 99.6 Plus
3L 28110227 3L 12645113..12645215 2161..2263 515 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:12:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 12638462..12641380 2294..5212 14580 99.9 Plus
3L 28103327 3L 12635146..12635978 1089..1921 4150 99.8 Plus
3L 28103327 3L 12626429..12627045 473..1089 3070 99.8 Plus
3L 28103327 3L 12621036..12621507 1..472 2360 100 Plus
3L 28103327 3L 12637900..12638140 1920..2160 1190 99.5 Plus
3L 28103327 3L 12638213..12638315 2161..2263 515 100 Plus
3L 28103327 3L 12638372..12638406 2260..2294 175 100 Plus
Blast to na_te.dros performed 2019-03-16 19:18:27
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 8442..8523 5106..5026 128 65.1 Minus
Stalker 7256 Stalker STALKER 7256bp 6495..6823 2968..2637 120 53.1 Minus

RE52337.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:19:05 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 12618420..12618891 1..472 99 -> Plus
chr3L 12623821..12624443 473..1089 91 -> Plus
chr3L 12632529..12632686 1090..1247 100 == Plus
chr3L 12632741..12633361 1302..1921 99 -> Plus
chr3L 12635284..12635522 1922..2160 99 -> Plus
chr3L 12635595..12635684 2161..2259 88 -> Plus
chr3L 12635745..12635779 2260..2294 100 -> Plus
chr3L 12635836..12638755 2295..5212 97   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:39:58 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 1197..1709 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:48:44 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 1197..1709 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:01 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 1197..1709 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:42:36 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..513 1197..1709 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:57 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..5212 1..5212 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:48:44 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..5212 1..5212 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:01 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 3..5214 1..5212 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:42:36 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
CG32111-RA 1..5212 1..5212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12627936..12628407 1..472 100 -> Plus
3L 12633329..12633945 473..1089 99 -> Plus
3L 12642047..12642878 1090..1921 99 -> Plus
3L 12644802..12645040 1922..2160 99 -> Plus
3L 12645113..12645211 2161..2259 100 -> Plus
3L 12645272..12645306 2260..2294 100 -> Plus
3L 12645363..12648280 2295..5212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12627936..12628407 1..472 100 -> Plus
3L 12633329..12633945 473..1089 99 -> Plus
3L 12642047..12642878 1090..1921 99 -> Plus
3L 12644802..12645040 1922..2160 99 -> Plus
3L 12645113..12645211 2161..2259 100 -> Plus
3L 12645272..12645306 2260..2294 100 -> Plus
3L 12645363..12648280 2295..5212 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12627936..12628407 1..472 100 -> Plus
3L 12633329..12633945 473..1089 99 -> Plus
3L 12642047..12642878 1090..1921 99 -> Plus
3L 12644802..12645040 1922..2160 99 -> Plus
3L 12645113..12645211 2161..2259 100 -> Plus
3L 12645272..12645306 2260..2294 100 -> Plus
3L 12645363..12648280 2295..5212 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:01 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12621036..12621507 1..472 100 -> Plus
arm_3L 12626429..12627045 473..1089 99 -> Plus
arm_3L 12635147..12635978 1090..1921 99 -> Plus
arm_3L 12637902..12638140 1922..2160 99 -> Plus
arm_3L 12638213..12638311 2161..2259 100 -> Plus
arm_3L 12638372..12638406 2260..2294 100 -> Plus
arm_3L 12638463..12641380 2295..5212 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:17 Download gff for RE52337.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12621036..12621507 1..472 100 -> Plus
3L 12626429..12627045 473..1089 99 -> Plus
3L 12635147..12635978 1090..1921 99 -> Plus
3L 12637902..12638140 1922..2160 99 -> Plus
3L 12638213..12638311 2161..2259 100 -> Plus
3L 12638372..12638406 2260..2294 100 -> Plus
3L 12638463..12641380 2295..5212 99   Plus

RE52337.pep Sequence

Translation from 1196 to 1708

> RE52337.pep
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTP*

RE52337.pep Blast Records

Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25360-PA 178 GM25360-PA 1..178 1..170 658 83.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:09:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14392-PA 102 GD14392-PA 1..98 1..103 284 71.4 Plus

RE52337.hyp Sequence

Translation from 1196 to 1708

> RE52337.hyp
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTP*
Sequence RE52337.hyp has no blast hits.