Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
RE52337.complete Sequence
5228 bp (5228 high quality bases) assembled on 2004-08-12
GenBank Submission: BT021937
> RE52337.complete
AGTATGCGCTCGAACTCGGTAATGCGCACATCATGGGCGAGAGTGGGCGC
GCAAGGCCGAACGAACAAACAGGTTGTGTACCACTGGGCGGTGGGTGGTG
GTGGGCGGTATTTGGAGGTGGAGGTATTAGCCTGGAGGTGGGTGCGTTTT
GTGGCAAATATCCGAAAGTTGTGAATAACCCAAAAGTGCGTGCCCCTGAT
TGGGCCAAGGTGGGAGTACCATATCAGTCAGATCAACGATTCCACACGGC
GTAAACAAACACACACACACACCACAGAAACAGAGTGCCAAAGTTTACTG
TCACGTGCTTGTCAACAACGTCTTGGCGTTTTATAACGCAACGCCCTGAC
CCCGGACACGATGAAGCTTTACAAGTGACCCCCGGTTCCTCCTGGACTTT
GCACCCGGCCAAAGGCAACTACTACCGCCACTAACTGGGCTGAATTGAAC
TCAAGTCCCACAGCGCTACCATCATACTTTTAGGACGATGCCAGGACACG
GCCTGACGGCATTTCCTACAGGGCACGAAGGACATACCCATCGCCATCCT
TGTGCACATCCACATCCTCGCCTACATCGAATGAGAGCGCCCACAAGGGA
TACAGTTGTTAACGTGGCCAAGGAGCAGCGACTATGGCGGGGACAAAAAC
ACAAACATGGTTGCCGCAGGACGCTTGCAGTTGAAGGAGCAGAGCACTTT
ATGTGCATATAATGTCCGCTCTCACCCGAAGCACACACCCACACTCGCAC
ACACACTCGCGCACACACACACACACGCGGAGAGGCAGGACCCTTTGAGC
ACGGTGTCGGCCAAGTTGCGGGGAATTGTTAATATTGTCTGGGCCTGTAA
GCAGCATTTACATGCTGGCCGACACCACGTACTACATACGTCCTGCCTGA
TGGACGGTCTCCGGGATACGGAATCCTTTCCGTACGGATGATGCTCCGGC
TTTAAGTAGGCCCGCCTGGTAACAGATATTGTTTTAAAAATATGTACATC
CTTGCATTTTGCAGATGTTGAATTAACCGACTATACCCGACAGTTTTCAT
TAGAAAATGGAGGATGGACACAAGTGCCGGAGTGGCCGGTTCTACAAATC
CCAGTGCACTCCATTCATTTCGACACCCTGTCCAGACGAAACTCCGGATT
TTGGCTTGGCCCACTTGACCGGGCAAAAACAGTGGACCAACTGATAATGA
TGCTGTTGGCGACTTTGTGTTTGCTCATGCCGGTAGCCTTGTGCCCAGGT
CTTTGGTCCTTGGTCCTTGTTACTGGGTCCTTGGTCCTCGGTCCTTGGTC
CATGCAGTGGCTGGCTTTGATGTTTCGCCAGGATGATGAATTATATTTGA
CATCTATGTGCTTGGGCGGCGGTCCTCCTCCTCCTGCTCCGTCGTTGCTA
ACATGTGTGTACCCTGCCACATTTGATGCCACTCAAACTACAAATACATA
CGTGTGCATGCGCACCAAAAAACCACCCAGTTATCCATGCACCCACCCAC
CTACACTCGCGTCTGATGAGAGCCGCACTTGGATATGTTTATTTTACTGT
CAAAACATTAAAGTAAACTCCCGCCGATGCCGCCGCACGGGGTTGATTGT
TATCAGGGGGCGGTGTCGACAGCGTTGTACCTATGCGAGGGTGGAAAACC
GATGGAAGGACCATGCCGGGTACTTCGTCCTCTTGGCCACCTTCGGTTTG
ACTCCGTAGACAAGTCTATTTGCATATGTTGACGGCATACTCTAACCAGA
TCCTGGTGGATTTCCTGCTTAACGGCCGTGGCCATCACAACAGCCATCCC
TTTGCACAGGACCTTCACACATGCGGCTGTGTGGCATGCCTTTTTGACAA
CTCATAACAATTACTCATCATAAACAAAGACGTTTTTTATGCGAGAAGAT
CGTGTGAAAAAGAAAAGCGAGATGTGGAAAGCCCAAATGCCGATGCATTC
TCGATTCGTGGCATTAAGACAAAAGTAAACTTGATTTTGGTATGAAATTG
ATTCATTCATTTTCGATCCATTGAGTCAGATTCTTATCCGATGGATGAGC
CGGTCAGTATCACCACTTCCAACTGTGTGCACATCCAACAGGTAGTCGAA
CCAGACAAACTGTCTCCACTTGCAATGGAGTCTCGTTTCCATCCTCTTCG
CCCCTTTCAACTAATATTTGACTGGGAATTCAGCGAGAGCCGGGAATCCT
TTGATGGCAGGATATCGTCATTCAGCTTCGGAAAAATAATTTATTCGATA
AATTTCGATGTTTCCATAGACCATTATGTCAGCTAGAGAACATGATATCT
CACCAAACAACTGTTGAATGATTCTTGATGGACTGGATGAAAGCAACTGG
ATTTAATTATGTTAATTTGTAATTTTAATATGTTATCAAAAAAAAAACAT
CGAAGTAGGATGGAGTTTTACTGATGCGCTTTCCAATCGAATCGAATTTG
GTTGATTTTTATTAGCATTCTTATTGGATTACTTTTTGTAAAAACACATA
TGATTGCATAATATAATTGTATTAAATGTGTATTTTTGTAAACCTTATAT
AGTTTAAACATTTAAACGAACAAATTGTTAAACATGGCCAATGATTACAT
GCTAAACCAAAAATTTTTGCTGTATTTGGACAATTGTATTTATAGGTACT
GATTAGTTGATATTAATATTAAACATAAACAAGAAACATGATGTTATTCA
TAAATTCAATCACATCCAAATGACCTATCGAAATTAAATATATGTTACAA
GATATAACAATGTGAAATTGTACTAAAATTGCAATGGTTTTCAATAAGTT
GACTCACAGGAGAAAATAATGTATACATTGGAATTTTATAAGAACATATT
GTTCACAGCTCTACGCTTTTTTGAGGATTATCATATATTACAAAAAAAGA
ATTATTGTCTTTAATTTTATATAAAATTTTTAAAATATTCATAATCAAAT
ATATGTTGTTGTTAGTTTCATGAACACAATGAAAAAAAAAACAGAAAAAT
TCCCATCCAATAATAATTTAAAATATATTGGAATAATTACTTTCACTCAA
TTTATTAAGTGATCAAGACATCTTATGCAGAGATCTGATTTTAATTTAGA
GTTCAGTTTCCGATCTTAACAATTAAATAAATTACTTTGCTAATTATTTA
ACTCGATCCACTTAGTTAAAGATGATCACGCATACGCAACCATTGCGCAT
TAATTTACACATATGCCTAAGAGTATGCAACGTATTCTTTTATGCACTTT
CTAAAGCATACTTATGTGGTTAATTACGTGCTGCAGCATATTTTCTTTCC
CATAAATGTCTATCGCAGTTTAGGCGTGATCTCAAATTTACTTTTGTATA
AATCAATAACTATTCTATTATCGATAAGATGTTGTTCAAAAGGGCTCTCT
TCTTAGTCGATCATAGAAAGTGATCATAAACTTGTATATCATGTAACATA
CATTAGAGAAAAGAATTCGTCCACTGCCAACATAAAGTCATAGATACTCA
AAACTGTTAAAAAAAAGTATCATTTAAATTGTTAAATACTGTAATTCTTT
TAACATTGCATTTAAATTATAAGATCAAATTTACCCAATTTTAAATATAA
TCGGCTATAGTATCTTAAGTTCTTTTAAATGCTTGTGACTTAAAATTTCG
ATTTCACACAGTAACTTTTGTGATTTAAATCTTTAATTAGGCTATTAGGT
ATTACAAGTTGAGTTAACAAGAGTTATGCGAATTATATATTCATTATTTG
ATAACAATTTTATTGATACATCACATACAATACGTCGTAAAGCTCAAATA
TTTTAAAGACAACTAATTTGTAGGGGGACAATGCTCAATCACCTTAATAC
CCACAATAAATTTGATCCACTTATTGTGCATTGTTATAAGTCATAATAAC
CCGAAACCGAGCTGGTCGATAAAGGACGGCTGCGAATATATTTATTGTTT
TCCGCTTACTACCTGAATACGAATTAGCATTGGGACCCACCCCTCCGCCC
CTGCCAGCCATATACATATGTAGAAACCTATCTGTATACGAAAGTAATGT
CTTGAGCAGACCCTGGATCGTGCCCCATAAATCATGCCAAACTGCGTTTG
GGTATAGAAAGTCAAAGTAAACTGCCATCACTTAAAGTCATTCAAGCATT
TATTTATGTCAAAACATTGTCCGCTTAGCTGCTGCGAACCTTTTGACAGT
CCCCGAGGAGGTAGGGATTCGGGATCGGAATCGGGATTGGGATCGAGAGT
CGGAGGGGTCAGTTGGCCAGTCGAATGTATAACTCAATTATAGGCGGCTG
TGTGCTCACCTCGCAGCGGGGTGTCGGCGCATTAGCCACTCCTCCATATC
CTGGCCCTCAGCCCTCGGTTCGCCGTGAGTTCCCTTTTTAGCGCTAGACC
GGATCGGATAATGCACATGCGGCGATCGGGGTCATTGCGGTTTTCGGGAT
CTCCAGTCTGCAGTCCCGAATCTGCTGGACGAGATAACCCCGACTAGACT
GCATAGATGTCATTAGAAACCGGGCACCAACACGATCCTCAATGAAATAA
CCTCTCTGTTAGTTTGTCTTTATTATCTCTTCCCTGGAGGGGGGATTCCT
GTGTGGCCCGCATCGGATGGCACATTGTGACCACGATCGACCTCCAAGGT
ACAGGCCTCCCTGTACATGATTCTGTTTAACGAGAACAATGTTCTTGCAA
TTCTGCAAACGATGGCCACACCGCCGTTGCTTCGTTGGCGATCGCCTTTA
CTTACAGTTTCTGGACCGGATCTGGGGAGGATCGGGGCGATCCGCAACCA
GGTGAGGGGATAACAACCACACGATGGCACCGAATCGTGCAAAAGTACAG
CGACGGATGGCAGGTGGCGCCGATGCGAATTTGAATATGGAATGTCAGTC
GGGCATATGGCTAGCAAATTTGTATTGTGTGGGGGGAAACCTTGTTATGG
GCTAAAAATAGGGATAACACACTCAAATTTACATAAAATTTATAAACTTC
TGTTATCAATTTGTAGGGCCAGCTTTCTTATTGGATTACATTTACCTTTC
AATCTGTTTATATTTATATTTTATAGCAAAAGAACTAAGATTTAAAGCTT
GTCCTTACACTTATACTTACTTGTTACTTACACTTACACATAATCATACT
TCATAAATATTCCATTCCACATTAATTATCAGAAGACATAAAATAAATTA
TTTAAAAGCTCTAAAAAAAAAAAAAAAA
RE52337.complete Blast Records
Blast to MB8.fasta performed 2010-07-15 16:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32111-RA | 5212 | CG32111-RA | 1..5212 | 1..5212 | 26000 | 99.9 | Plus |
nc_12276.a | 460 | nc_12276.a | 245..460 | 1921..2136 | 1065 | 99.5 | Plus |
nc_12276.a | 460 | nc_12276.a | 1..170 | 786..955 | 850 | 100 | Plus |
nc_12276.a | 460 | nc_12276.a | 171..245 | 1015..1089 | 375 | 100 | Plus |
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
chr3L | 24539361 | chr3L | 12635838..12638755 | 2297..5212 | 14390 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 12632528..12633361 | 1089..1921 | 4075 | 99.5 | Plus |
chr3L | 24539361 | chr3L | 12623821..12624443 | 473..1089 | 2960 | 98.7 | Plus |
chr3L | 24539361 | chr3L | 12618420..12618891 | 1..472 | 2330 | 99.6 | Plus |
chr3L | 24539361 | chr3L | 12635282..12635522 | 1920..2160 | 1175 | 99.2 | Plus |
chr3L | 24539361 | chr3L | 12635595..12635688 | 2161..2263 | 315 | 89.3 | Plus |
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:33 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:18:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12645362..12648280 | 2294..5212 | 14580 | 100 | Plus |
3L | 28110227 | 3L | 12642046..12642878 | 1089..1921 | 4150 | 99.9 | Plus |
3L | 28110227 | 3L | 12633329..12633945 | 473..1089 | 3070 | 99.8 | Plus |
3L | 28110227 | 3L | 12627936..12628407 | 1..472 | 2360 | 100 | Plus |
3L | 28110227 | 3L | 12644800..12645040 | 1920..2160 | 1190 | 99.6 | Plus |
3L | 28110227 | 3L | 12645113..12645215 | 2161..2263 | 515 | 100 | Plus |
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:12:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28103327 | 3L | 12638462..12641380 | 2294..5212 | 14580 | 99.9 | Plus |
3L | 28103327 | 3L | 12635146..12635978 | 1089..1921 | 4150 | 99.8 | Plus |
3L | 28103327 | 3L | 12626429..12627045 | 473..1089 | 3070 | 99.8 | Plus |
3L | 28103327 | 3L | 12621036..12621507 | 1..472 | 2360 | 100 | Plus |
3L | 28103327 | 3L | 12637900..12638140 | 1920..2160 | 1190 | 99.5 | Plus |
3L | 28103327 | 3L | 12638213..12638315 | 2161..2263 | 515 | 100 | Plus |
3L | 28103327 | 3L | 12638372..12638406 | 2260..2294 | 175 | 100 | Plus |
Blast to na_te.dros performed 2019-03-16 19:18:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
roo | 9092 | roo DM_ROO 9092bp | 8442..8523 | 5106..5026 | 128 | 65.1 | Minus |
Stalker | 7256 | Stalker STALKER 7256bp | 6495..6823 | 2968..2637 | 120 | 53.1 | Minus |
RE52337.complete Sim4 Records
Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:19:05 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
chr3L | 12618420..12618891 | 1..472 | 99 | -> | Plus |
chr3L | 12623821..12624443 | 473..1089 | 91 | -> | Plus |
chr3L | 12632529..12632686 | 1090..1247 | 100 | == | Plus |
chr3L | 12632741..12633361 | 1302..1921 | 99 | -> | Plus |
chr3L | 12635284..12635522 | 1922..2160 | 99 | -> | Plus |
chr3L | 12635595..12635684 | 2161..2259 | 88 | -> | Plus |
chr3L | 12635745..12635779 | 2260..2294 | 100 | -> | Plus |
chr3L | 12635836..12638755 | 2295..5212 | 97 | | Plus |
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 16:39:58 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..513 | 1197..1709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 13:48:44 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..513 | 1197..1709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:01 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..513 | 1197..1709 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:42:36 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..513 | 1197..1709 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:39:57 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..5212 | 1..5212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 13:48:44 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..5212 | 1..5212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:01 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 3..5214 | 1..5212 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:42:36 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32111-RA | 1..5212 | 1..5212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12627936..12628407 | 1..472 | 100 | -> | Plus |
3L | 12633329..12633945 | 473..1089 | 99 | -> | Plus |
3L | 12642047..12642878 | 1090..1921 | 99 | -> | Plus |
3L | 12644802..12645040 | 1922..2160 | 99 | -> | Plus |
3L | 12645113..12645211 | 2161..2259 | 100 | -> | Plus |
3L | 12645272..12645306 | 2260..2294 | 100 | -> | Plus |
3L | 12645363..12648280 | 2295..5212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12627936..12628407 | 1..472 | 100 | -> | Plus |
3L | 12633329..12633945 | 473..1089 | 99 | -> | Plus |
3L | 12642047..12642878 | 1090..1921 | 99 | -> | Plus |
3L | 12644802..12645040 | 1922..2160 | 99 | -> | Plus |
3L | 12645113..12645211 | 2161..2259 | 100 | -> | Plus |
3L | 12645272..12645306 | 2260..2294 | 100 | -> | Plus |
3L | 12645363..12648280 | 2295..5212 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:19:05 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12627936..12628407 | 1..472 | 100 | -> | Plus |
3L | 12633329..12633945 | 473..1089 | 99 | -> | Plus |
3L | 12642047..12642878 | 1090..1921 | 99 | -> | Plus |
3L | 12644802..12645040 | 1922..2160 | 99 | -> | Plus |
3L | 12645113..12645211 | 2161..2259 | 100 | -> | Plus |
3L | 12645272..12645306 | 2260..2294 | 100 | -> | Plus |
3L | 12645363..12648280 | 2295..5212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:01 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12621036..12621507 | 1..472 | 100 | -> | Plus |
arm_3L | 12626429..12627045 | 473..1089 | 99 | -> | Plus |
arm_3L | 12635147..12635978 | 1090..1921 | 99 | -> | Plus |
arm_3L | 12637902..12638140 | 1922..2160 | 99 | -> | Plus |
arm_3L | 12638213..12638311 | 2161..2259 | 100 | -> | Plus |
arm_3L | 12638372..12638406 | 2260..2294 | 100 | -> | Plus |
arm_3L | 12638463..12641380 | 2295..5212 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:34:17 Download gff for
RE52337.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12621036..12621507 | 1..472 | 100 | -> | Plus |
3L | 12626429..12627045 | 473..1089 | 99 | -> | Plus |
3L | 12635147..12635978 | 1090..1921 | 99 | -> | Plus |
3L | 12637902..12638140 | 1922..2160 | 99 | -> | Plus |
3L | 12638213..12638311 | 2161..2259 | 100 | -> | Plus |
3L | 12638372..12638406 | 2260..2294 | 100 | -> | Plus |
3L | 12638463..12641380 | 2295..5212 | 99 | | Plus |
RE52337.pep Sequence
Translation from 1196 to 1708
> RE52337.pep
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTP*
RE52337.pep Blast Records
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsec\GM25360-PA | 178 | GM25360-PA | 1..178 | 1..170 | 658 | 83.1 | Plus |
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:09:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsim\GD14392-PA | 102 | GD14392-PA | 1..98 | 1..103 | 284 | 71.4 | Plus |
RE52337.hyp Sequence
Translation from 1196 to 1708
> RE52337.hyp
MMLLATLCLLMPVALCPGLWSLVLVTGSLVLGPWSMQWLALMFRQDDELY
LTSMCLGGGPPPPAPSLLTCVYPATFDATQTTNTYVCMRTKKPPSYPCTH
PPTLASDESRTWICLFYCQNIKVNSRRCRRTGLIVIRGRCRQRCTYARVE
NRWKDHAGYFVLLATFGLTP*
Sequence RE52337.hyp has no blast hits.