BDGP Sequence Production Resources |
Search the DGRC for RE52411
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 524 |
Well: | 11 |
Vector: | pFlc-1 |
Associated Gene/Transcript | bai-RA |
Protein status: | RE52411.pep: gold |
Preliminary Size: | 633 |
Sequenced Size: | 822 |
Gene | Date | Evidence |
---|---|---|
CG11785 | 2002-01-01 | Sim4 clustering to Release 2 |
CG11785 | 2002-01-09 | Blastp of sequenced clone |
CG11785 | 2003-01-01 | Sim4 clustering to Release 3 |
bai | 2008-04-29 | Release 5.5 accounting |
bai | 2008-08-15 | Release 5.9 accounting |
bai | 2008-12-18 | 5.12 accounting |
822 bp (822 high quality bases) assembled on 2002-01-09
GenBank Submission: AY075503
> RE52411.complete GTCTTGTGCCAGCTCTATAAAATAGCCACCTCATCTTTGTCAGCCGTAGA TTTTGTTAGATTTAAATTGTTAGCTATGGCGAGGGCGGCTTTTATTGTGT GCCTACTGATGGCCTGTGCCTGGAGCAGCCATGCGGTGATGTTCAAGCTG TCGCCGAACACCCAGAAGTGCCTCAAGGAAGACATCCAGGCGAACCAACT GGTTATGGGCGAGTTCGAAGTTTCCGACGTACCCGGCCAGATCATCGACT ACATTGCACGCGACACCAAGGGACACATCCTGTCGCAGAAGGAGCACATC ACTAAGGGCAAGTTCAGCTTCATGTCCGAGGTGTACGATACGTACGAAAT CTGCTTTATATCCAAAGTTCCTGCACATCAACGCGGCGTTATACAGGAAG TATCGCTCTTGACCAAAAAGGGAGTGGAGACCAAGAGCTACGAAGGCATT GGCGAAGCATCCAAACTGAAGCCCCTTGAAGTTGATCTTAAGCGTTTGGA GGATCTCTCCGACTCCATTGTGCGTGATTTCGTTCTCATGCGCAAGCGGG AGGAGGAAATGCGCGATACCAATGAGAAAACCAACAGCCGCGTGCTGTTC TTCAGCATCTTCAGCATGTGCTGCCTGCTCGGCTTGGCGACGTGGCAAGT TCTGTACCTCCGCAGGTACTTCAAAGCCAAAAAACTCATCGAATAGTCGT CTAGCCGTAGTCTTAATGCGTGCGTGGAACTGTGTTTAAATGCCTGGTTT AGATTTCATCCTTTCATCTTTTGAACGTTTTTCTGAAATAAATGCAACTA CCACGTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 20862561..20862816 | 1..256 | 1280 | 100 | Plus |
chr3R | 27901430 | chr3R | 20863397..20863629 | 574..806 | 1165 | 100 | Plus |
chr3R | 27901430 | chr3R | 20863208..20863334 | 448..574 | 635 | 100 | Plus |
chr3R | 27901430 | chr3R | 20862887..20863007 | 256..376 | 560 | 97.5 | Plus |
chr3R | 27901430 | chr3R | 20863067..20863142 | 372..447 | 365 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 25039375..25039630 | 1..256 | 1280 | 100 | Plus |
3R | 32079331 | 3R | 25040211..25040444 | 574..807 | 1170 | 100 | Plus |
3R | 32079331 | 3R | 25040022..25040148 | 448..574 | 635 | 100 | Plus |
3R | 32079331 | 3R | 25039701..25039821 | 256..376 | 605 | 100 | Plus |
3R | 32079331 | 3R | 25039881..25039956 | 372..447 | 365 | 98.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 24780206..24780461 | 1..256 | 1280 | 100 | Plus |
3R | 31820162 | 3R | 24781042..24781275 | 574..807 | 1170 | 100 | Plus |
3R | 31820162 | 3R | 24780853..24780979 | 448..574 | 635 | 100 | Plus |
3R | 31820162 | 3R | 24780532..24780652 | 256..376 | 605 | 100 | Plus |
3R | 31820162 | 3R | 24780712..24780787 | 372..447 | 365 | 98.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 20862561..20862815 | 1..255 | 100 | -> | Plus |
chr3R | 20862887..20863007 | 256..376 | 97 | -> | Plus |
chr3R | 20863072..20863142 | 377..447 | 100 | -> | Plus |
chr3R | 20863208..20863334 | 448..574 | 100 | -> | Plus |
chr3R | 20863398..20863629 | 575..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..621 | 76..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..621 | 76..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..621 | 76..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..621 | 76..696 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..806 | 1..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..806 | 1..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 2..807 | 1..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 1..806 | 1..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
bai-RA | 2..807 | 1..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25039375..25039629 | 1..255 | 100 | -> | Plus |
3R | 25039701..25039821 | 256..376 | 100 | -> | Plus |
3R | 25039886..25039956 | 377..447 | 100 | -> | Plus |
3R | 25040022..25040148 | 448..574 | 100 | -> | Plus |
3R | 25040212..25040443 | 575..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25039375..25039629 | 1..255 | 100 | -> | Plus |
3R | 25039701..25039821 | 256..376 | 100 | -> | Plus |
3R | 25039886..25039956 | 377..447 | 100 | -> | Plus |
3R | 25040022..25040148 | 448..574 | 100 | -> | Plus |
3R | 25040212..25040443 | 575..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 25039375..25039629 | 1..255 | 100 | -> | Plus |
3R | 25039701..25039821 | 256..376 | 100 | -> | Plus |
3R | 25039886..25039956 | 377..447 | 100 | -> | Plus |
3R | 25040022..25040148 | 448..574 | 100 | -> | Plus |
3R | 25040212..25040443 | 575..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 20865097..20865351 | 1..255 | 100 | -> | Plus |
arm_3R | 20865423..20865543 | 256..376 | 100 | -> | Plus |
arm_3R | 20865608..20865678 | 377..447 | 100 | -> | Plus |
arm_3R | 20865744..20865870 | 448..574 | 100 | -> | Plus |
arm_3R | 20865934..20866165 | 575..806 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 24780206..24780460 | 1..255 | 100 | -> | Plus |
3R | 24780532..24780652 | 256..376 | 100 | -> | Plus |
3R | 24780717..24780787 | 377..447 | 100 | -> | Plus |
3R | 24780853..24780979 | 448..574 | 100 | -> | Plus |
3R | 24781043..24781274 | 575..806 | 100 | Plus |
Translation from 0 to 695
> RE52411.hyp VLCQLYKIATSSLSAVDFVRFKLLAMARAAFIVCLLMACAWSSHAVMFKL SPNTQKCLKEDIQANQLVMGEFEVSDVPGQIIDYIARDTKGHILSQKEHI TKGKFSFMSEVYDTYEICFISKVPAHQRGVIQEVSLLTKKGVETKSYEGI GEASKLKPLEVDLKRLEDLSDSIVRDFVLMRKREEEMRDTNEKTNSRVLF FSIFSMCCLLGLATWQVLYLRRYFKAKKLIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bai-PA | 206 | CG11785-PA | 1..206 | 26..231 | 1054 | 100 | Plus |
eca-PA | 216 | CG33104-PA | 2..216 | 28..230 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 5..208 | 26..230 | 186 | 23.6 | Plus |
CHOp24-PA | 208 | CG3564-PA | 5..208 | 26..230 | 186 | 23.6 | Plus |
p24-2-PB | 244 | CG33105-PB | 2..206 | 28..220 | 179 | 26.3 | Plus |
Translation from 75 to 695
> RE52411.pep MARAAFIVCLLMACAWSSHAVMFKLSPNTQKCLKEDIQANQLVMGEFEVS DVPGQIIDYIARDTKGHILSQKEHITKGKFSFMSEVYDTYEICFISKVPA HQRGVIQEVSLLTKKGVETKSYEGIGEASKLKPLEVDLKRLEDLSDSIVR DFVLMRKREEEMRDTNEKTNSRVLFFSIFSMCCLLGLATWQVLYLRRYFK AKKLIE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16422-PA | 206 | GF16422-PA | 1..206 | 1..206 | 1007 | 90.8 | Plus |
Dana\GF23165-PA | 216 | GF23165-PA | 17..216 | 17..205 | 208 | 27 | Plus |
Dana\GF19355-PA | 208 | GF19355-PA | 19..208 | 15..205 | 160 | 25.1 | Plus |
Dana\GF19411-PA | 226 | GF19411-PA | 40..217 | 23..203 | 147 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG11349-PA | 206 | GG11349-PA | 1..206 | 1..206 | 1083 | 97.6 | Plus |
Dere\GG17343-PA | 216 | GG17343-PA | 2..216 | 3..205 | 223 | 28.4 | Plus |
Dere\GG18710-PA | 208 | GG18710-PA | 21..208 | 17..205 | 179 | 26.4 | Plus |
Dere\GG18829-PA | 210 | GG18829-PA | 8..201 | 6..203 | 155 | 25 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22337-PA | 185 | GH22337-PA | 1..185 | 22..206 | 928 | 93 | Plus |
Dgri\GH18190-PA | 216 | GH18190-PA | 5..216 | 7..205 | 225 | 28.3 | Plus |
Dgri\GH24063-PA | 209 | GH24063-PA | 23..209 | 18..205 | 159 | 25.7 | Plus |
Dgri\GH11947-PA | 238 | GH11947-PA | 52..229 | 23..203 | 142 | 25.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
bai-PA | 206 | CG11785-PA | 1..206 | 1..206 | 1054 | 100 | Plus |
eca-PA | 216 | CG33104-PA | 2..216 | 3..205 | 218 | 27.9 | Plus |
CHOp24-PB | 208 | CG3564-PB | 5..208 | 1..205 | 186 | 23.6 | Plus |
CHOp24-PA | 208 | CG3564-PA | 5..208 | 1..205 | 186 | 23.6 | Plus |
p24-2-PB | 244 | CG33105-PB | 2..206 | 3..195 | 179 | 26.3 | Plus |
p24-2-PA | 244 | CG33105-PA | 2..206 | 3..195 | 179 | 26.3 | Plus |
p24-1-PB | 210 | CG1967-PB | 8..201 | 6..203 | 147 | 25.5 | Plus |
p24-1-PA | 210 | CG1967-PA | 8..201 | 6..203 | 147 | 25.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23975-PA | 206 | GI23975-PA | 1..206 | 1..206 | 986 | 87.9 | Plus |
Dmoj\GI15674-PA | 206 | GI15674-PA | 1..206 | 1..206 | 774 | 68 | Plus |
Dmoj\GI10144-PA | 216 | GI10144-PA | 2..216 | 3..205 | 219 | 27.4 | Plus |
Dmoj\GI15191-PA | 208 | GI15191-PA | 21..208 | 17..205 | 150 | 23.8 | Plus |
Dmoj\GI15363-PA | 235 | GI15363-PA | 35..226 | 11..203 | 150 | 26 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21889-PA | 206 | GL21889-PA | 1..206 | 1..206 | 983 | 88.3 | Plus |
Dper\GL12279-PA | 216 | GL12279-PA | 17..216 | 17..205 | 211 | 27.5 | Plus |
Dper\GL19967-PA | 208 | GL19967-PA | 19..208 | 15..205 | 167 | 25.1 | Plus |
Dper\GL12278-PA | 291 | GL12278-PA | 1..207 | 1..196 | 158 | 23.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA17284-PA | 216 | GA17284-PA | 17..216 | 17..205 | 210 | 27.5 | Plus |
Dpse\GA28584-PA | 208 | GA28584-PA | 19..208 | 15..205 | 163 | 24.6 | Plus |
Dpse\GA26252-PB | 291 | GA26252-PB | 1..207 | 1..196 | 160 | 24.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17789-PA | 140 | GM17789-PA | 1..102 | 1..102 | 534 | 95.1 | Plus |
Dsec\GM26230-PA | 216 | GM26230-PA | 9..216 | 5..205 | 220 | 28.2 | Plus |
Dsec\GM17789-PA | 140 | GM17789-PA | 101..140 | 167..206 | 210 | 97.5 | Plus |
Dsec\GM12348-PA | 208 | GM12348-PA | 21..208 | 17..205 | 182 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD21160-PA | 206 | GD21160-PA | 1..206 | 1..206 | 1091 | 98.5 | Plus |
Dsim\GD20772-PA | 216 | GD20772-PA | 9..216 | 5..205 | 221 | 28.2 | Plus |
Dsim\GD16693-PA | 208 | GD16693-PA | 21..208 | 17..205 | 182 | 26.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ14134-PA | 206 | GJ14134-PA | 1..206 | 1..206 | 970 | 86.9 | Plus |
Dvir\GJ23362-PA | 216 | GJ23362-PA | 2..216 | 3..205 | 220 | 27.4 | Plus |
Dvir\GJ14798-PA | 208 | GJ14798-PA | 21..208 | 17..205 | 153 | 26.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14360-PA | 206 | GK14360-PA | 1..206 | 1..206 | 953 | 84 | Plus |
Dwil\GK25550-PA | 201 | GK25550-PA | 1..156 | 1..153 | 406 | 48.1 | Plus |
Dwil\GK12749-PA | 216 | GK12749-PA | 2..216 | 3..205 | 232 | 28.4 | Plus |
Dwil\GK14515-PA | 299 | GK14515-PA | 115..299 | 20..205 | 143 | 24.2 | Plus |
Dwil\GK10123-PA | 224 | GK10123-PA | 20..215 | 4..203 | 140 | 23.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE23545-PA | 206 | GE23545-PA | 1..206 | 1..206 | 1083 | 97.6 | Plus |
Dyak\GE24749-PA | 216 | GE24749-PA | 2..216 | 3..205 | 224 | 28.4 | Plus |
Dyak\GE16348-PA | 208 | GE16348-PA | 5..208 | 1..205 | 180 | 25.3 | Plus |
Dyak\GE17592-PA | 210 | GE17592-PA | 8..201 | 6..203 | 156 | 25 | Plus |