BDGP Sequence Production Resources |
Search the DGRC for RE52427
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 524 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Taf13-RA |
Protein status: | RE52427.pep: gold |
Sequenced Size: | 641 |
Gene | Date | Evidence |
---|---|---|
CG10756 | 2001-12-14 | Blastp of sequenced clone |
CG10756 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10756 | 2003-01-01 | Sim4 clustering to Release 3 |
Taf13 | 2008-04-29 | Release 5.5 accounting |
Taf13 | 2008-08-15 | Release 5.9 accounting |
Taf13 | 2008-12-18 | 5.12 accounting |
641 bp (641 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071439
> RE52427.complete GCTCATTCAATGCGGTGTTACTCGCGTAAACACAAAATTTGTATACAAAT TCAACGTTTTAATTGAAGTCTGAGCACTATGGCCTCAAATAGCATGCCAG AGGAGAATTTCGAGGGCGGTGATTTCAACTTTGATGACGACGCGGAGGAT GACCAATTTGTGGCTACCAACTCAGGACGAAAGCGCCTATTCAGCAAGGA GCTGCGCTGCATGATGTTCGGATTCGGAGACGACAAAAATCCATACACGG AAACCGTAGATCTGTTGGAAGACCTGGTCATTGAGTATATAGCTGAGACC ACTCACCGGGCAATGGAGATCGGTCGAACAGGCCGTGTTCAAGTCGAAGA CATTATCTTCCTGGTGCGCAAAGATCCCCGAAAGTACGCTAGGGTGAAGG ATCTTCTGACCATGAACGAGGAGTTGAAAAAGGCACGAAAGGCCTTCGAT GAGATCAAGTATGTGGGCACCGAAGGCAAGCTCAAATGACAGCGGTCAAA AAAAGCCACACCAAATCCAGGTATAAGCCAAACCTAGCAGTTAGCTCCAA GATGCGAATTATTTTTAATGTCTTTAATACTCTAAGCTAGCGCATAATAA ACTAATCAAAATAGTCTTCAATGCCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 20091726..20092069 | 467..124 | 1675 | 99.1 | Minus |
chr2L | 23010047 | chr2L | 20091499..20091656 | 623..466 | 775 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 20092133..20092255 | 123..1 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20093317..20093660 | 467..124 | 1705 | 99.7 | Minus |
2L | 23513712 | 2L | 20093086..20093247 | 627..466 | 795 | 99.4 | Minus |
2L | 23513712 | 2L | 20093724..20093846 | 123..1 | 615 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 20093317..20093660 | 467..124 | 1705 | 99.7 | Minus |
2L | 23513712 | 2L | 20093086..20093247 | 627..466 | 795 | 99.3 | Minus |
2L | 23513712 | 2L | 20093724..20093846 | 123..1 | 615 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 20091497..20091655 | 467..625 | 98 | <- | Minus |
chr2L | 20091727..20092069 | 124..466 | 99 | <- | Minus |
chr2L | 20092133..20092255 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..411 | 79..489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..411 | 79..489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..411 | 79..489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..411 | 79..489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..411 | 79..489 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..625 | 1..625 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..625 | 1..625 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 4..628 | 1..625 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 1..625 | 1..625 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Taf13-RA | 4..628 | 1..625 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20093088..20093246 | 467..625 | 99 | <- | Minus |
2L | 20093318..20093660 | 124..466 | 99 | <- | Minus |
2L | 20093724..20093846 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20093088..20093246 | 467..625 | 99 | <- | Minus |
2L | 20093318..20093660 | 124..466 | 99 | <- | Minus |
2L | 20093724..20093846 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20093088..20093246 | 467..625 | 99 | <- | Minus |
2L | 20093318..20093660 | 124..466 | 99 | <- | Minus |
2L | 20093724..20093846 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 20093088..20093246 | 467..625 | 99 | <- | Minus |
arm_2L | 20093318..20093660 | 124..466 | 99 | <- | Minus |
arm_2L | 20093724..20093846 | 1..123 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 20093318..20093660 | 124..466 | 99 | <- | Minus |
2L | 20093724..20093846 | 1..123 | 100 | Minus | |
2L | 20093088..20093246 | 467..625 | 99 | <- | Minus |
Translation from 78 to 488
> RE52427.pep MASNSMPEENFEGGDFNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFG DDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQVEDIIFLVRKDP RKYARVKDLLTMNEELKKARKAFDEIKYVGTEGKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14449-PA | 136 | GF14449-PA | 1..136 | 1..136 | 606 | 94.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG21587-PA | 136 | GG21587-PA | 1..136 | 1..136 | 703 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13659-PA | 134 | GH13659-PA | 1..134 | 1..136 | 576 | 87.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Taf13-PA | 136 | CG10756-PA | 1..136 | 1..136 | 703 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17411-PA | 134 | GI17411-PA | 1..134 | 1..136 | 578 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26351-PA | 136 | GL26351-PA | 1..136 | 1..136 | 622 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10547-PA | 136 | GA10547-PA | 1..136 | 1..136 | 622 | 95.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16962-PA | 135 | GM16962-PA | 1..130 | 1..130 | 681 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11962-PA | 136 | GD11962-PA | 1..136 | 1..136 | 710 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18344-PA | 134 | GJ18344-PA | 1..134 | 1..136 | 586 | 89 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18673-PA | 135 | GK18673-PA | 1..135 | 1..136 | 608 | 89.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12606-PA | 136 | GE12606-PA | 1..136 | 1..136 | 705 | 99.3 | Plus |
Translation from 78 to 488
> RE52427.hyp MASNSMPEENFEGGDFNFDDDAEDDQFVATNSGRKRLFSKELRCMMFGFG DDKNPYTETVDLLEDLVIEYIAETTHRAMEIGRTGRVQVEDIIFLVRKDP RKYARVKDLLTMNEELKKARKAFDEIKYVGTEGKLK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Taf13-PA | 136 | CG10756-PA | 1..136 | 1..136 | 703 | 100 | Plus |