Clone RE52507 Report

Search the DGRC for RE52507

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:525
Well:7
Vector:pFlc-1
Associated Gene/TranscriptIncenp-RA
Protein status:RE52507.pep: gold
Sequenced Size:2431

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG12165 2002-11-02 Blastp of sequenced clone
CG12165 2003-01-01 Sim4 clustering to Release 3
Incenp 2008-04-29 Release 5.5 accounting
Incenp 2008-08-15 Release 5.9 accounting
Incenp 2008-12-18 5.12 accounting

Clone Sequence Records

RE52507.complete Sequence

2431 bp (2431 high quality bases) assembled on 2002-11-02

GenBank Submission: BT001674

> RE52507.complete
AATTGCCGCCATTTGAAAAAAACGATAAAATCGAAGGAACCGAATCCGGA
TTTGCAGTTTGTCAGATACAGTCGCTAGATATGGAGGACATCTTGGGCGT
GCTGGGCTCGCTTTCGGACCTGCGCAGGGAGCTCGAGGTCCTGCGCAAGG
CCCACTTTGAGGAGCTGGACCACCTCTTCTACGGCACAGGCCAGCCGGAG
GCGGAGGCCAAACCGAGGGACAGTGCTCCGGCAGCGAAGAGTCAGGAGAA
CTCTTCGGTGACGCCGCAGCAAACGAAAAAGCGCCCCAAGCGACTCACCT
CACTGGCCGAGGATCAGAATGAGCCCGAGGCTCCAGACGCCACGGCCAAC
AACACGTCGGCCCGTCAAAGCACTCGGGTCAGCAACTCCCAGTTGCTGGC
TATCGCCGAGGACGAGCACAACTCCACGGCCTCGCTGATGCCGCCTCCGC
CTGTGCCCGTCTCGGCGGACACCACCCTCGGCTCCGGAAGGCCACAGCGA
GCCGCTAAGCTGAAGACCGAGAAATTACTCAAGGAGCCCTCACTCAACCG
TAAGATGCGGCGGCCCAGCAGCGAGGAGCTCGTAAAGGTCAAGGTTGAGA
GCGAGCAGCGAGTCTCCCAGTTTAACAGCTTCACCAGTGCACAGGCGTTA
GAGGAAAATAAACTAGCGGAGCCGGAACTAGAAGAGCCAGCAGCAGAAAC
AGCTGAGCAGCAAAAGCCTCCGGAGGAGGCCTCAGTCACAGAGGACGTGA
ACACCACGAAGACACTCCGCGTGAAGGTAAAGCGCGAGAAACTCAGTACC
GAAGCAGTGCCCCCGTTAACCAATGCGGTCTCCACGGCAAATGTGACCAC
CGTCTCCTCTGTAACAACGGAGGCAGCGCGACCGGACGATACGGTGGCCA
GCAACACGACGACATCCACGGAGGTCTCCAAGAAGGTCCGCAAGAAGAAG
AAGGACGTGGAAAGCCACCGACCCATAAAGGTGGAACGATTCAGCGACCT
GGACAAGAGCTCGCCAGTCTCGTCGCGCACGCGCAAGTGTAGCAGCGATT
CGCGAACGGTTCAGGAGCGATCCATATACAAGGATGCACTCGAAGATCCG
CCCGTTGCAGAGCAATCAGTGGCTGCAGTTGCTCCGGCTGCTGTCAATGA
GACCGTGGCGATTTCCAACGCCACCCTCGTACTGGGTCCTGCGCCGACGA
GCGATAGTCCAATAGGACCAGCTGGAGATGCCACTTTTGAGGTGCACTCC
AACGACAAGAAACAACCTCTGAGTAAGCAGGACAGCCTCTTAACGGAGGA
CGAGTCGGTGGAGGAGAAGCTGCCGACGACCAAGCTGCTCTCGAGCATAA
AGGCTATAAAACTGCCTACCCGTACACATGAGCTTTTCAACCCACTGCTT
CAGAGTCCAGTGAAAATGCGCGTGGAGGCGTTCGAGAATGCGGCAAACGC
ACAGAACAGCATGCGCCCTAAGCGGGGAAAAGATCTGCAGGGCACGCCAG
GATCAAACAACACTCCCAAAATTGGCAAGCTGCCTGCTCCGACTGTTGGT
CGCTTTTTCACACCGACTCAAACGACAAGCACACTACCATTAAGCTCGGC
GCAGCCCAAGAAGGGACCTGCCAGCGCGTCTAAGGCCACTAGTCTGCTGA
AGACGGCCACCGGTACGAACCTAAGGTCGGTCAATTCCACGTCCACAAAA
ACGCTGTCGCGCGAGAACAGCGGAGACGACTTCCGCAAGGGCCTGCACAA
TCTGGCGGAGGAGCGCAAGAAGCTGCGTGAGCAAAAGCACCAGCAGGCTG
CCCAGCAGCGCGAAGCCAAGGAGCGGGAGCGGGCAGAGCGTATGGCCAAG
CTGGCCGCCGAGCGCGCCAAGAAGCAGGAGGAGCGAAAGCGAATTGAAGA
GCGCAAACGACAAGAGCTGGAGGAGCTGCAGCGGAAGATGCGCCAGCAAG
AGGAAGCCGAGGCGCTCAAGAAGGCCAAGTTCAAGGAGCTGGAGCAGCAG
AAACTGCAGCAGCTAACCGGCGCCAAGCCCAAGAAGATGCTTCCGCCGCC
GCCGAAAACCAAGTACACCTGGGAGATGCTGCACGAAGACGACTCGACAG
ACGACGAGGGAAAGGTCACCCACAAGCGTCCCCCAGCGCCCACCTGGAGT
CGAAGCCACGTAAGGGGAGAGGCAATTGCTATGCAGAGCCACTGCCCAAC
CGACATCATCGACAGCTTTTTCTCGGTGGCGCCCACCACACCGGACCTAA
AGCAGATATTCCCGAACATCGATCCCAGCCAGCTGAAGCGAAACTCCAGC
GTGCTGTGGTCCACGCCGCCGCGCTATTCCGAGCTGCCGAAATACTAGCC
AAGTAGTCCTGCTCTCTTCTCCCGTAAATGCACATGTTTATGATCGAATA
AATAAAGTTAATTGCGAAAAAAAAAAAAAAA

RE52507.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-RA 2875 Incenp-RA 183..2602 1..2420 12085 99.9 Plus
Incenp.a 2872 Incenp.a 183..2599 1..2420 12015 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 03:40:09
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 3166453..3167513 330..1390 5305 100 Plus
chr2R 21145070 chr2R 3167817..3168485 1487..2155 3345 100 Plus
chr2R 21145070 chr2R 3168641..3168900 2155..2414 1300 100 Plus
chr2R 21145070 chr2R 3166206..3166388 148..330 915 100 Plus
chr2R 21145070 chr2R 3165996..3166145 1..150 750 100 Plus
chr2R 21145070 chr2R 3167577..3167673 1391..1487 485 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:42 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 03:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 7279106..7280166 330..1390 5305 100 Plus
2R 25286936 2R 7280470..7281138 1487..2155 3345 100 Plus
2R 25286936 2R 7281294..7281559 2155..2420 1315 99.6 Plus
2R 25286936 2R 7278859..7279041 148..330 915 100 Plus
2R 25286936 2R 7278649..7278798 1..150 750 100 Plus
2R 25286936 2R 7280230..7280326 1391..1487 485 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:10:47
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 7280305..7281365 330..1390 5305 100 Plus
2R 25260384 2R 7281669..7282337 1487..2155 3345 100 Plus
2R 25260384 2R 7282493..7282758 2155..2420 1315 99.6 Plus
2R 25260384 2R 7280058..7280240 148..330 915 100 Plus
2R 25260384 2R 7279848..7279997 1..150 750 100 Plus
2R 25260384 2R 7281429..7281525 1391..1487 485 100 Plus
Blast to na_te.dros performed 2019-03-16 03:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dsil\Loa 7779 Dsil\Loa DSV28T24 7779bp AKA(S39346) Derived from X60177 (Rel. 37, Last updated, Version 8). 3976..4034 1725..1782 121 69.5 Plus

RE52507.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 03:41:10 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 3165996..3166144 1..149 100 -> Plus
chr2R 3166208..3166388 150..330 100 -> Plus
chr2R 3166454..3167513 331..1390 100 -> Plus
chr2R 3167577..3167673 1391..1487 100 -> Plus
chr2R 3167818..3168484 1488..2154 100 -> Plus
chr2R 3168641..3168902 2155..2416 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:03 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 81..2348 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:08:08 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 81..2348 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:47:33 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 81..2348 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:58:18 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 81..2348 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:10:43 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 1..2268 81..2348 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:28:25 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 183..2598 1..2416 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:08:08 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 183..2598 1..2416 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:47:33 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 183..2598 1..2416 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:58:18 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 183..2598 1..2416 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:10:43 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
Incenp-RA 44..2459 1..2416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:10 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7278649..7278797 1..149 100 -> Plus
2R 7278861..7279041 150..330 100 -> Plus
2R 7279107..7280166 331..1390 100 -> Plus
2R 7280230..7280326 1391..1487 100 -> Plus
2R 7280471..7281137 1488..2154 100 -> Plus
2R 7281294..7281555 2155..2416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:10 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7278649..7278797 1..149 100 -> Plus
2R 7278861..7279041 150..330 100 -> Plus
2R 7279107..7280166 331..1390 100 -> Plus
2R 7280230..7280326 1391..1487 100 -> Plus
2R 7280471..7281137 1488..2154 100 -> Plus
2R 7281294..7281555 2155..2416 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 03:41:10 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7278649..7278797 1..149 100 -> Plus
2R 7278861..7279041 150..330 100 -> Plus
2R 7279107..7280166 331..1390 100 -> Plus
2R 7280230..7280326 1391..1487 100 -> Plus
2R 7280471..7281137 1488..2154 100 -> Plus
2R 7281294..7281555 2155..2416 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:47:33 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 3166366..3166546 150..330 100 -> Plus
arm_2R 3166154..3166302 1..149 100 -> Plus
arm_2R 3166612..3167671 331..1390 100 -> Plus
arm_2R 3167735..3167831 1391..1487 100 -> Plus
arm_2R 3167976..3168642 1488..2154 100 -> Plus
arm_2R 3168799..3169060 2155..2416 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:30:30 Download gff for RE52507.complete
Subject Subject Range Query Range Percent Splice Strand
2R 7280306..7281365 331..1390 100 -> Plus
2R 7281429..7281525 1391..1487 100 -> Plus
2R 7281670..7282336 1488..2154 100 -> Plus
2R 7282493..7282754 2155..2416 99   Plus
2R 7279848..7279996 1..149 100 -> Plus
2R 7280060..7280240 150..330 100 -> Plus

RE52507.hyp Sequence

Translation from 2 to 2347

> RE52507.hyp
LPPFEKNDKIEGTESGFAVCQIQSLDMEDILGVLGSLSDLRRELEVLRKA
HFEELDHLFYGTGQPEAEAKPRDSAPAAKSQENSSVTPQQTKKRPKRLTS
LAEDQNEPEAPDATANNTSARQSTRVSNSQLLAIAEDEHNSTASLMPPPP
VPVSADTTLGSGRPQRAAKLKTEKLLKEPSLNRKMRRPSSEELVKVKVES
EQRVSQFNSFTSAQALEENKLAEPELEEPAAETAEQQKPPEEASVTEDVN
TTKTLRVKVKREKLSTEAVPPLTNAVSTANVTTVSSVTTEAARPDDTVAS
NTTTSTEVSKKVRKKKKDVESHRPIKVERFSDLDKSSPVSSRTRKCSSDS
RTVQERSIYKDALEDPPVAEQSVAAVAPAAVNETVAISNATLVLGPAPTS
DSPIGPAGDATFEVHSNDKKQPLSKQDSLLTEDESVEEKLPTTKLLSSIK
AIKLPTRTHELFNPLLQSPVKMRVEAFENAANAQNSMRPKRGKDLQGTPG
SNNTPKIGKLPAPTVGRFFTPTQTTSTLPLSSAQPKKGPASASKATSLLK
TATGTNLRSVNSTSTKTLSRENSGDDFRKGLHNLAEERKKLREQKHQQAA
QQREAKERERAERMAKLAAERAKKQEERKRIEERKRQELEELQRKMRQQE
EAEALKKAKFKELEQQKLQQLTGAKPKKMLPPPPKTKYTWEMLHEDDSTD
DEGKVTHKRPPAPTWSRSHVRGEAIAMQSHCPTDIIDSFFSVAPTTPDLK
QIFPNIDPSQLKRNSSVLWSTPPRYSELPKY*

RE52507.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:39:15
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-PB 755 CG12165-PB 1..755 27..781 3801 100 Plus
Incenp-PA 755 CG12165-PA 1..755 27..781 3801 100 Plus
Incenp-PC 754 CG12165-PC 1..754 27..781 3784 99.9 Plus
Muc68D-PB 1514 CG6004-PB 325..917 68..716 206 19.3 Plus
Muc30E-PC 1702 CG33300-PC 380..1031 76..718 196 17.2 Plus

RE52507.pep Sequence

Translation from 80 to 2347

> RE52507.pep
MEDILGVLGSLSDLRRELEVLRKAHFEELDHLFYGTGQPEAEAKPRDSAP
AAKSQENSSVTPQQTKKRPKRLTSLAEDQNEPEAPDATANNTSARQSTRV
SNSQLLAIAEDEHNSTASLMPPPPVPVSADTTLGSGRPQRAAKLKTEKLL
KEPSLNRKMRRPSSEELVKVKVESEQRVSQFNSFTSAQALEENKLAEPEL
EEPAAETAEQQKPPEEASVTEDVNTTKTLRVKVKREKLSTEAVPPLTNAV
STANVTTVSSVTTEAARPDDTVASNTTTSTEVSKKVRKKKKDVESHRPIK
VERFSDLDKSSPVSSRTRKCSSDSRTVQERSIYKDALEDPPVAEQSVAAV
APAAVNETVAISNATLVLGPAPTSDSPIGPAGDATFEVHSNDKKQPLSKQ
DSLLTEDESVEEKLPTTKLLSSIKAIKLPTRTHELFNPLLQSPVKMRVEA
FENAANAQNSMRPKRGKDLQGTPGSNNTPKIGKLPAPTVGRFFTPTQTTS
TLPLSSAQPKKGPASASKATSLLKTATGTNLRSVNSTSTKTLSRENSGDD
FRKGLHNLAEERKKLREQKHQQAAQQREAKERERAERMAKLAAERAKKQE
ERKRIEERKRQELEELQRKMRQQEEAEALKKAKFKELEQQKLQQLTGAKP
KKMLPPPPKTKYTWEMLHEDDSTDDEGKVTHKRPPAPTWSRSHVRGEAIA
MQSHCPTDIIDSFFSVAPTTPDLKQIFPNIDPSQLKRNSSVLWSTPPRYS
ELPKY*

RE52507.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 08:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF12704-PA 750 GF12704-PA 1..750 1..755 2484 72.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23270-PA 754 GG23270-PA 1..754 1..755 3404 89.4 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 08:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH21527-PA 777 GH21527-PA 1..777 1..755 1885 54.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
Incenp-PB 755 CG12165-PB 1..755 1..755 3801 100 Plus
Incenp-PA 755 CG12165-PA 1..755 1..755 3801 100 Plus
Incenp-PC 754 CG12165-PC 1..754 1..755 3784 99.9 Plus
Muc68D-PB 1514 CG6004-PB 325..917 42..690 206 19.3 Plus
Muc30E-PC 1702 CG33300-PC 380..1031 50..692 196 17.2 Plus
Muc30E-PC 1702 CG33300-PC 677..1297 40..692 181 16.9 Plus
Muc30E-PC 1702 CG33300-PC 1101..1570 59..539 167 19.3 Plus
Muc30E-PC 1702 CG33300-PC 222..887 40..692 161 16.4 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 08:08:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19498-PA 778 GI19498-PA 1..778 1..755 1882 56.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 08:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11159-PA 1182 GL11159-PA 462..1182 24..755 2274 69.1 Plus
Dper\GL11159-PA 1182 GL11159-PA 1..460 1..468 1176 58.8 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 08:08:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA24630-PA 744 GA24630-PA 1..744 1..755 2442 68.9 Plus
Dpse\GA24631-PA 740 GA24631-PA 1..740 1..755 2431 68.1 Plus
Dpse\GA22537-PA 185 GA22537-PA 1..185 570..755 883 89.2 Plus
Dpse\GA25500-PA 168 GA25500-PA 1..168 587..755 808 89.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 08:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20943-PA 757 GM20943-PA 1..757 1..755 3820 97.5 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 08:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD15339-PA 889 GD15339-PA 380..888 200..706 2511 96.3 Plus
Dsim\GD15339-PA 889 GD15339-PA 1..378 1..397 1677 87.4 Plus
Dsim\GD10468-PA 310 GD10468-PA 1..310 446..755 1637 99 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 08:08:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ21068-PA 780 GJ21068-PA 1..780 1..755 1938 56.5 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 08:08:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK21798-PA 770 GK21798-PA 1..770 1..755 2089 59.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:08:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE19118-PA 743 GE19118-PA 1..743 1..755 3330 89.8 Plus