BDGP Sequence Production Resources |
Search the DGRC for RE52681
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 526 |
Well: | 81 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Gs1l-RA |
Protein status: | RE52681.pep: gold |
Sequenced Size: | 994 |
Gene | Date | Evidence |
---|---|---|
CG15441 | 2002-01-01 | Sim4 clustering to Release 2 |
Gs1l | 2008-04-29 | Release 5.5 accounting |
Gs1l | 2008-08-15 | Release 5.9 accounting |
Gs1l | 2008-12-18 | 5.12 accounting |
994 bp (994 high quality bases) assembled on 2005-08-03
GenBank Submission: BT023759
> RE52681.complete AGTAAGCTCGCGGAAAAATTCGGAAGAGGCGGAAAAGTACGAGACGCCCG ATATTGCAAAAAGCGGAAGCAGATTACGTTTAGGAAACGAACTTGTTGAC TTTGTAACATTACATAATCGGAAGCCCAGAGTGAGGAGAACTGCTGCGAG ATGGCCAACAAAGTGCTGCGAAAGGTGACGCACTGCGTCTTCGACATGGA CGGTCTGCTGCTGGACACCGAACGCCTTTATACTGTGGCCACCGAAATGA TCCTCGAGCCCTACGGCAAGACATATCCCTTTGAGATCAAGGAGCAGGTC ATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCATGGTCGAGCACTACGA GCTGCCGATGTCGTGGGAGGAGTACGCACGCCAGCAGCGCGCCAACACCG AGATCCTGATGCGGAACGCCCAGTTGATGCCAGGTGCTGAGCGCCTGCTG CGTCACCTGCACGCCAACAAGGTACCCTTTTGCTTGGCCACCAGCTCCGG CGCCGACATGGTCGAGCTGAAGACGGCCCAACATCGGGAGCTGTTCTCCC TGTTTAACCACAAGGTGTGCGGTTCGTCGGACAAGGAGGTGGTCAACGGC AAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCGGCAGATTCGGTGTGCC GCCCAAACCGTCCGACTGCCTGGTGTTCGAGGACTCGCCGAACGGCGTGA CGGCTGCCAACAGCGCCGGAATGCAGGTGGTGATGGTGCCGGACCCACGA CTGTCCCAGGAAAAGACCTCGCACGCCACACAAGTGCTGGCCTCGTTGGC GGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCCTTCACGGATTGAACTT AATGGCTGACGTACTTTTTGTAGCTAAAAGATGCTATTGCTGTAATTGGA AATCGATGTACCTACCAAGAAAATGAATTTAAGTGTAAATGTTATCCCAT ATACACGTATACGTATGTGTGCATAAAGCAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 4454326..4454873 | 979..432 | 2740 | 100 | Minus |
chr2L | 23010047 | chr2L | 4455245..4455466 | 435..214 | 1110 | 100 | Minus |
chr2L | 23010047 | chr2L | 4455519..4455653 | 214..80 | 675 | 100 | Minus |
chr2L | 23010047 | chr2L | 4455852..4455932 | 84..4 | 390 | 98.8 | Minus |
chrU | 10048995 | chrU | 4925894..4925974 | 4..84 | 360 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4455192..4455740 | 980..432 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 435..214 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456520 | 214..80 | 675 | 100 | Minus |
2L | 23513712 | 2L | 4456719..4456799 | 84..4 | 390 | 98.8 | Minus |
Ymm | 880023 | Ymm | 485731..485811 | 4..84 | 360 | 96.3 | Plus |
Y | 3667352 | Y | 1618590..1618670 | 4..84 | 360 | 96.3 | Plus |
Y | 3667352 | Y | 1379342..1379422 | 84..4 | 360 | 96.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 4455192..4455740 | 980..432 | 2745 | 100 | Minus |
2L | 23513712 | 2L | 4456112..4456333 | 435..214 | 1110 | 100 | Minus |
2L | 23513712 | 2L | 4456386..4456520 | 214..80 | 675 | 100 | Minus |
2L | 23513712 | 2L | 4456719..4456799 | 84..4 | 390 | 98.7 | Minus |
Y | 3410481 | Y | 1524657..1524737 | 4..84 | 360 | 96.2 | Plus |
Y | 3410481 | Y | 1285409..1285489 | 84..4 | 360 | 96.2 | Minus |
Unmapped_scaffold_54 | 44104 | Unmapped_scaffold_54 | 33567..33647 | 4..84 | 360 | 96.2 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 4454326..4454871 | 434..979 | 100 | <- | Minus |
chr2L | 4455247..4455465 | 215..433 | 100 | <- | Minus |
chr2L | 4455519..4455653 | 80..214 | 100 | <- | Minus |
chr2L | 4455857..4455935 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 1..696 | 151..846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 1..696 | 151..846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 1..696 | 151..846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 1..696 | 151..846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 1..696 | 151..846 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 21..971 | 1..951 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 21..999 | 1..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 6..984 | 1..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 21..971 | 1..951 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Gs1l-RA | 6..984 | 1..979 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4455193..4455738 | 434..979 | 100 | <- | Minus |
2L | 4456114..4456332 | 215..433 | 100 | <- | Minus |
2L | 4456386..4456520 | 80..214 | 100 | <- | Minus |
2L | 4456724..4456802 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4455193..4455738 | 434..979 | 100 | <- | Minus |
2L | 4456114..4456332 | 215..433 | 100 | <- | Minus |
2L | 4456386..4456520 | 80..214 | 100 | <- | Minus |
2L | 4456724..4456802 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4455193..4455738 | 434..979 | 100 | <- | Minus |
2L | 4456114..4456332 | 215..433 | 100 | <- | Minus |
2L | 4456386..4456520 | 80..214 | 100 | <- | Minus |
2L | 4456724..4456802 | 1..79 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 4456724..4456802 | 1..79 | 98 | Minus | |
arm_2L | 4456114..4456332 | 215..433 | 100 | <- | Minus |
arm_2L | 4456386..4456520 | 80..214 | 100 | <- | Minus |
arm_2L | 4455193..4455738 | 434..979 | 100 | <- | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 4455193..4455738 | 434..979 | 100 | <- | Minus |
2L | 4456114..4456332 | 215..433 | 100 | <- | Minus |
2L | 4456386..4456520 | 80..214 | 100 | <- | Minus |
2L | 4456724..4456802 | 1..79 | 98 | Minus |
Translation from 150 to 845
> RE52681.hyp MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR LSQEKTSHATQVLASLADFKPEQFGLPAFTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gs1l-PA | 231 | CG15441-PA | 1..231 | 1..231 | 1203 | 100 | Plus |
Gs1l-PB | 231 | CG15441-PB | 1..231 | 1..231 | 917 | 77.1 | Plus |
CG31924-PB | 236 | CG31924-PB | 16..234 | 9..227 | 532 | 48.9 | Plus |
CG5565-PA | 240 | CG5565-PA | 10..231 | 9..229 | 461 | 40.5 | Plus |
CG5556-PB | 299 | CG5556-PB | 27..246 | 9..230 | 292 | 31.1 | Plus |
Translation from 150 to 845
> RE52681.pep MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR LSQEKTSHATQVLASLADFKPEQFGLPAFTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24022-PA | 304 | GF24022-PA | 92..304 | 19..231 | 697 | 62.9 | Plus |
Dana\GF19687-PA | 241 | GF19687-PA | 20..241 | 9..229 | 540 | 48.2 | Plus |
Dana\GF14724-PA | 240 | GF14724-PA | 3..231 | 2..229 | 510 | 45.4 | Plus |
Dana\GF14725-PA | 240 | GF14725-PA | 10..233 | 9..231 | 479 | 41.8 | Plus |
Dana\GF24022-PA | 304 | GF24022-PA | 1..104 | 1..104 | 400 | 66.3 | Plus |
Dana\GF14726-PA | 141 | GF14726-PA | 1..134 | 99..231 | 328 | 48.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24373-PA | 304 | GG24373-PA | 92..304 | 19..231 | 793 | 70 | Plus |
Dere\GG24597-PA | 240 | GG24597-PA | 20..238 | 9..227 | 529 | 48.4 | Plus |
Dere\GG24373-PA | 304 | GG24373-PA | 1..99 | 1..99 | 511 | 93.9 | Plus |
Dere\GG24596-PA | 153 | GG24596-PA | 1..143 | 87..228 | 351 | 45.8 | Plus |
Dere\GG24600-PA | 297 | GG24600-PA | 27..246 | 9..230 | 306 | 31.5 | Plus |
Dere\GG24599-PA | 241 | GG24599-PA | 27..217 | 9..201 | 254 | 31.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11658-PA | 304 | GH11658-PA | 92..304 | 19..231 | 637 | 58.2 | Plus |
Dgri\GH10332-PA | 238 | GH10332-PA | 9..231 | 8..231 | 526 | 47.8 | Plus |
Dgri\GH11658-PA | 304 | GH11658-PA | 1..99 | 1..99 | 375 | 65.7 | Plus |
Dgri\GH11411-PA | 303 | GH11411-PA | 34..245 | 12..226 | 358 | 35.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Gs1l-PA | 231 | CG15441-PA | 1..231 | 1..231 | 1203 | 100 | Plus |
Gs1l-PB | 231 | CG15441-PB | 1..231 | 1..231 | 917 | 77.1 | Plus |
CG31924-PB | 236 | CG31924-PB | 16..234 | 9..227 | 532 | 48.9 | Plus |
CG5565-PA | 240 | CG5565-PA | 10..231 | 9..229 | 461 | 40.5 | Plus |
CG5556-PB | 299 | CG5556-PB | 27..246 | 9..230 | 292 | 31.1 | Plus |
CG5556-PA | 299 | CG5556-PA | 27..246 | 9..230 | 292 | 31.1 | Plus |
CG5561-PA | 305 | CG5561-PA | 27..247 | 9..231 | 286 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17960-PA | 304 | GI17960-PA | 92..304 | 19..231 | 661 | 60.1 | Plus |
Dmoj\GI17090-PA | 240 | GI17090-PA | 9..231 | 6..229 | 550 | 49.6 | Plus |
Dmoj\GI17960-PA | 304 | GI17960-PA | 1..103 | 1..103 | 371 | 61.2 | Plus |
Dmoj\GI18114-PA | 299 | GI18114-PA | 38..253 | 9..227 | 345 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL15404-PA | 304 | GL15404-PA | 92..304 | 19..231 | 707 | 62.9 | Plus |
Dper\GL15659-PA | 236 | GL15659-PA | 13..236 | 6..229 | 560 | 49.6 | Plus |
Dper\GL14869-PA | 236 | GL14869-PA | 13..236 | 6..229 | 560 | 49.6 | Plus |
Dper\GL14859-PA | 240 | GL14859-PA | 1..231 | 1..229 | 525 | 46.6 | Plus |
Dper\GL15658-PA | 240 | GL15658-PA | 1..231 | 1..229 | 521 | 46.1 | Plus |
Dper\GL15404-PA | 304 | GL15404-PA | 1..99 | 1..99 | 384 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13732-PA | 304 | GA13732-PA | 92..304 | 19..231 | 707 | 62.9 | Plus |
Dpse\GA23996-PA | 236 | GA23996-PA | 13..236 | 6..229 | 560 | 49.6 | Plus |
Dpse\GA16569-PA | 236 | GA16569-PA | 13..236 | 6..229 | 560 | 49.6 | Plus |
Dpse\GA25364-PA | 236 | GA25364-PA | 13..236 | 6..229 | 559 | 49.6 | Plus |
Dpse\GA25358-PA | 240 | GA25358-PA | 1..231 | 1..229 | 526 | 46.6 | Plus |
Dpse\GA13732-PA | 304 | GA13732-PA | 1..99 | 1..99 | 384 | 68.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM18089-PA | 304 | GM18089-PA | 92..304 | 19..231 | 818 | 73.2 | Plus |
Dsec\GM18089-PA | 304 | GM18089-PA | 1..99 | 1..99 | 507 | 93.9 | Plus |
Dsec\GM16613-PA | 240 | GM16613-PA | 3..231 | 2..229 | 464 | 40 | Plus |
Dsec\GM16614-PA | 216 | GM16614-PA | 11..214 | 24..227 | 456 | 46.1 | Plus |
Dsec\GM16616-PA | 299 | GM16616-PA | 27..246 | 9..230 | 300 | 31.1 | Plus |
Dsec\GM16615-PA | 304 | GM16615-PA | 27..247 | 9..231 | 283 | 30.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22707-PA | 304 | GD22707-PA | 92..304 | 19..231 | 825 | 73.7 | Plus |
Dsim\GD22707-PA | 304 | GD22707-PA | 1..99 | 1..99 | 502 | 92.9 | Plus |
Dsim\GD22912-PA | 240 | GD22912-PA | 3..231 | 2..229 | 466 | 40 | Plus |
Dsim\GD22913-PA | 216 | GD22913-PA | 11..214 | 24..227 | 457 | 46.1 | Plus |
Dsim\GD22914-PA | 274 | GD22914-PA | 27..221 | 9..230 | 213 | 25.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17733-PA | 304 | GJ17733-PA | 92..304 | 19..231 | 658 | 59.6 | Plus |
Dvir\GJ10810-PA | 240 | GJ10810-PA | 7..233 | 4..231 | 543 | 48.2 | Plus |
Dvir\GJ17733-PA | 304 | GJ17733-PA | 1..103 | 1..103 | 380 | 62.1 | Plus |
Dvir\GJ17047-PA | 308 | GJ17047-PA | 40..252 | 11..226 | 357 | 36.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13331-PA | 238 | GK13331-PA | 13..238 | 6..231 | 708 | 59.3 | Plus |
Dwil\GK23925-PA | 304 | GK23925-PA | 91..304 | 18..231 | 673 | 60.7 | Plus |
Dwil\GK19038-PA | 243 | GK19038-PA | 20..237 | 9..226 | 529 | 47.2 | Plus |
Dwil\GK15189-PA | 240 | GK15189-PA | 10..231 | 9..229 | 520 | 45.3 | Plus |
Dwil\GK23925-PA | 304 | GK23925-PA | 1..99 | 1..99 | 394 | 68.7 | Plus |
Dwil\GK14950-PA | 294 | GK14950-PA | 24..244 | 9..229 | 298 | 31.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE14717-PA | 304 | GE14717-PA | 92..304 | 19..231 | 801 | 70.4 | Plus |
Dyak\GE15644-PA | 240 | GE15644-PA | 20..238 | 9..227 | 529 | 48.4 | Plus |
Dyak\GE14717-PA | 304 | GE14717-PA | 1..99 | 1..99 | 507 | 92.9 | Plus |
Dyak\GE15633-PA | 240 | GE15633-PA | 4..231 | 3..229 | 475 | 41.5 | Plus |
Dyak\GE15666-PA | 301 | GE15666-PA | 27..246 | 9..230 | 313 | 32 | Plus |
Dyak\GE15655-PA | 304 | GE15655-PA | 27..247 | 9..231 | 297 | 30.9 | Plus |