Clone RE52681 Report

Search the DGRC for RE52681

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:526
Well:81
Vector:pFlc-1
Associated Gene/TranscriptGs1l-RA
Protein status:RE52681.pep: gold
Sequenced Size:994

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15441 2002-01-01 Sim4 clustering to Release 2
Gs1l 2008-04-29 Release 5.5 accounting
Gs1l 2008-08-15 Release 5.9 accounting
Gs1l 2008-12-18 5.12 accounting

Clone Sequence Records

RE52681.complete Sequence

994 bp (994 high quality bases) assembled on 2005-08-03

GenBank Submission: BT023759

> RE52681.complete
AGTAAGCTCGCGGAAAAATTCGGAAGAGGCGGAAAAGTACGAGACGCCCG
ATATTGCAAAAAGCGGAAGCAGATTACGTTTAGGAAACGAACTTGTTGAC
TTTGTAACATTACATAATCGGAAGCCCAGAGTGAGGAGAACTGCTGCGAG
ATGGCCAACAAAGTGCTGCGAAAGGTGACGCACTGCGTCTTCGACATGGA
CGGTCTGCTGCTGGACACCGAACGCCTTTATACTGTGGCCACCGAAATGA
TCCTCGAGCCCTACGGCAAGACATATCCCTTTGAGATCAAGGAGCAGGTC
ATGGGCCTGCAGACGGAACCGCTGGCCCGGTTCATGGTCGAGCACTACGA
GCTGCCGATGTCGTGGGAGGAGTACGCACGCCAGCAGCGCGCCAACACCG
AGATCCTGATGCGGAACGCCCAGTTGATGCCAGGTGCTGAGCGCCTGCTG
CGTCACCTGCACGCCAACAAGGTACCCTTTTGCTTGGCCACCAGCTCCGG
CGCCGACATGGTCGAGCTGAAGACGGCCCAACATCGGGAGCTGTTCTCCC
TGTTTAACCACAAGGTGTGCGGTTCGTCGGACAAGGAGGTGGTCAACGGC
AAGCCTGCGCCCGACATTTTCCTAGTGGCCGCCGGCAGATTCGGTGTGCC
GCCCAAACCGTCCGACTGCCTGGTGTTCGAGGACTCGCCGAACGGCGTGA
CGGCTGCCAACAGCGCCGGAATGCAGGTGGTGATGGTGCCGGACCCACGA
CTGTCCCAGGAAAAGACCTCGCACGCCACACAAGTGCTGGCCTCGTTGGC
GGACTTCAAGCCGGAGCAGTTCGGGCTGCCCGCCTTCACGGATTGAACTT
AATGGCTGACGTACTTTTTGTAGCTAAAAGATGCTATTGCTGTAATTGGA
AATCGATGTACCTACCAAGAAAATGAATTTAAGTGTAAATGTTATCCCAT
ATACACGTATACGTATGTGTGCATAAAGCAAAAAAAAAAAAAAA

RE52681.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:32:22
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-RA 1124 Gs1l-RA 127..1103 4..980 4885 100 Plus
Gs1l.b 975 Gs1l.b 24..975 4..951 4675 99.5 Plus
Gs1l.a 965 Gs1l.a 24..965 4..951 4625 99.3 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 16:30:50
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 4454326..4454873 979..432 2740 100 Minus
chr2L 23010047 chr2L 4455245..4455466 435..214 1110 100 Minus
chr2L 23010047 chr2L 4455519..4455653 214..80 675 100 Minus
chr2L 23010047 chr2L 4455852..4455932 84..4 390 98.8 Minus
chrU 10048995 chrU 4925894..4925974 4..84 360 96.3 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:44 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 16:30:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455192..4455740 980..432 2745 100 Minus
2L 23513712 2L 4456112..4456333 435..214 1110 100 Minus
2L 23513712 2L 4456386..4456520 214..80 675 100 Minus
2L 23513712 2L 4456719..4456799 84..4 390 98.8 Minus
Ymm 880023 Ymm 485731..485811 4..84 360 96.3 Plus
Y 3667352 Y 1618590..1618670 4..84 360 96.3 Plus
Y 3667352 Y 1379342..1379422 84..4 360 96.3 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 4455192..4455740 980..432 2745 100 Minus
2L 23513712 2L 4456112..4456333 435..214 1110 100 Minus
2L 23513712 2L 4456386..4456520 214..80 675 100 Minus
2L 23513712 2L 4456719..4456799 84..4 390 98.7 Minus
Y 3410481 Y 1524657..1524737 4..84 360 96.2 Plus
Y 3410481 Y 1285409..1285489 84..4 360 96.2 Minus
Unmapped_scaffold_54 44104 Unmapped_scaffold_54 33567..33647 4..84 360 96.2 Plus
Blast to na_te.dros performed on 2019-03-15 16:30:49 has no hits.

RE52681.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 16:31:54 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 4454326..4454871 434..979 100 <- Minus
chr2L 4455247..4455465 215..433 100 <- Minus
chr2L 4455519..4455653 80..214 100 <- Minus
chr2L 4455857..4455935 1..79 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:06 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 151..846 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 15:55:53 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 151..846 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 02:03:57 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 151..846 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 16:36:35 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 151..846 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:39:58 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 1..696 151..846 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 18:32:51 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 21..971 1..951 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 15:55:52 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 21..999 1..979 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:57 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 6..984 1..979 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 16:36:35 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 21..971 1..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:39:58 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
Gs1l-RA 6..984 1..979 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:31:54 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455193..4455738 434..979 100 <- Minus
2L 4456114..4456332 215..433 100 <- Minus
2L 4456386..4456520 80..214 100 <- Minus
2L 4456724..4456802 1..79 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:31:54 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455193..4455738 434..979 100 <- Minus
2L 4456114..4456332 215..433 100 <- Minus
2L 4456386..4456520 80..214 100 <- Minus
2L 4456724..4456802 1..79 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 16:31:54 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455193..4455738 434..979 100 <- Minus
2L 4456114..4456332 215..433 100 <- Minus
2L 4456386..4456520 80..214 100 <- Minus
2L 4456724..4456802 1..79 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:57 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 4456724..4456802 1..79 98   Minus
arm_2L 4456114..4456332 215..433 100 <- Minus
arm_2L 4456386..4456520 80..214 100 <- Minus
arm_2L 4455193..4455738 434..979 100 <- Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:15:09 Download gff for RE52681.complete
Subject Subject Range Query Range Percent Splice Strand
2L 4455193..4455738 434..979 100 <- Minus
2L 4456114..4456332 215..433 100 <- Minus
2L 4456386..4456520 80..214 100 <- Minus
2L 4456724..4456802 1..79 98   Minus

RE52681.hyp Sequence

Translation from 150 to 845

> RE52681.hyp
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTD*

RE52681.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-PA 231 CG15441-PA 1..231 1..231 1203 100 Plus
Gs1l-PB 231 CG15441-PB 1..231 1..231 917 77.1 Plus
CG31924-PB 236 CG31924-PB 16..234 9..227 532 48.9 Plus
CG5565-PA 240 CG5565-PA 10..231 9..229 461 40.5 Plus
CG5556-PB 299 CG5556-PB 27..246 9..230 292 31.1 Plus

RE52681.pep Sequence

Translation from 150 to 845

> RE52681.pep
MANKVLRKVTHCVFDMDGLLLDTERLYTVATEMILEPYGKTYPFEIKEQV
MGLQTEPLARFMVEHYELPMSWEEYARQQRANTEILMRNAQLMPGAERLL
RHLHANKVPFCLATSSGADMVELKTAQHRELFSLFNHKVCGSSDKEVVNG
KPAPDIFLVAAGRFGVPPKPSDCLVFEDSPNGVTAANSAGMQVVMVPDPR
LSQEKTSHATQVLASLADFKPEQFGLPAFTD*

RE52681.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 14:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24022-PA 304 GF24022-PA 92..304 19..231 697 62.9 Plus
Dana\GF19687-PA 241 GF19687-PA 20..241 9..229 540 48.2 Plus
Dana\GF14724-PA 240 GF14724-PA 3..231 2..229 510 45.4 Plus
Dana\GF14725-PA 240 GF14725-PA 10..233 9..231 479 41.8 Plus
Dana\GF24022-PA 304 GF24022-PA 1..104 1..104 400 66.3 Plus
Dana\GF14726-PA 141 GF14726-PA 1..134 99..231 328 48.1 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 14:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24373-PA 304 GG24373-PA 92..304 19..231 793 70 Plus
Dere\GG24597-PA 240 GG24597-PA 20..238 9..227 529 48.4 Plus
Dere\GG24373-PA 304 GG24373-PA 1..99 1..99 511 93.9 Plus
Dere\GG24596-PA 153 GG24596-PA 1..143 87..228 351 45.8 Plus
Dere\GG24600-PA 297 GG24600-PA 27..246 9..230 306 31.5 Plus
Dere\GG24599-PA 241 GG24599-PA 27..217 9..201 254 31.1 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 14:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11658-PA 304 GH11658-PA 92..304 19..231 637 58.2 Plus
Dgri\GH10332-PA 238 GH10332-PA 9..231 8..231 526 47.8 Plus
Dgri\GH11658-PA 304 GH11658-PA 1..99 1..99 375 65.7 Plus
Dgri\GH11411-PA 303 GH11411-PA 34..245 12..226 358 35.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Gs1l-PA 231 CG15441-PA 1..231 1..231 1203 100 Plus
Gs1l-PB 231 CG15441-PB 1..231 1..231 917 77.1 Plus
CG31924-PB 236 CG31924-PB 16..234 9..227 532 48.9 Plus
CG5565-PA 240 CG5565-PA 10..231 9..229 461 40.5 Plus
CG5556-PB 299 CG5556-PB 27..246 9..230 292 31.1 Plus
CG5556-PA 299 CG5556-PA 27..246 9..230 292 31.1 Plus
CG5561-PA 305 CG5561-PA 27..247 9..231 286 30.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 14:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17960-PA 304 GI17960-PA 92..304 19..231 661 60.1 Plus
Dmoj\GI17090-PA 240 GI17090-PA 9..231 6..229 550 49.6 Plus
Dmoj\GI17960-PA 304 GI17960-PA 1..103 1..103 371 61.2 Plus
Dmoj\GI18114-PA 299 GI18114-PA 38..253 9..227 345 33.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 14:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL15404-PA 304 GL15404-PA 92..304 19..231 707 62.9 Plus
Dper\GL15659-PA 236 GL15659-PA 13..236 6..229 560 49.6 Plus
Dper\GL14869-PA 236 GL14869-PA 13..236 6..229 560 49.6 Plus
Dper\GL14859-PA 240 GL14859-PA 1..231 1..229 525 46.6 Plus
Dper\GL15658-PA 240 GL15658-PA 1..231 1..229 521 46.1 Plus
Dper\GL15404-PA 304 GL15404-PA 1..99 1..99 384 68.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 14:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA13732-PA 304 GA13732-PA 92..304 19..231 707 62.9 Plus
Dpse\GA23996-PA 236 GA23996-PA 13..236 6..229 560 49.6 Plus
Dpse\GA16569-PA 236 GA16569-PA 13..236 6..229 560 49.6 Plus
Dpse\GA25364-PA 236 GA25364-PA 13..236 6..229 559 49.6 Plus
Dpse\GA25358-PA 240 GA25358-PA 1..231 1..229 526 46.6 Plus
Dpse\GA13732-PA 304 GA13732-PA 1..99 1..99 384 68.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 14:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM18089-PA 304 GM18089-PA 92..304 19..231 818 73.2 Plus
Dsec\GM18089-PA 304 GM18089-PA 1..99 1..99 507 93.9 Plus
Dsec\GM16613-PA 240 GM16613-PA 3..231 2..229 464 40 Plus
Dsec\GM16614-PA 216 GM16614-PA 11..214 24..227 456 46.1 Plus
Dsec\GM16616-PA 299 GM16616-PA 27..246 9..230 300 31.1 Plus
Dsec\GM16615-PA 304 GM16615-PA 27..247 9..231 283 30.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 14:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22707-PA 304 GD22707-PA 92..304 19..231 825 73.7 Plus
Dsim\GD22707-PA 304 GD22707-PA 1..99 1..99 502 92.9 Plus
Dsim\GD22912-PA 240 GD22912-PA 3..231 2..229 466 40 Plus
Dsim\GD22913-PA 216 GD22913-PA 11..214 24..227 457 46.1 Plus
Dsim\GD22914-PA 274 GD22914-PA 27..221 9..230 213 25.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 14:24:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17733-PA 304 GJ17733-PA 92..304 19..231 658 59.6 Plus
Dvir\GJ10810-PA 240 GJ10810-PA 7..233 4..231 543 48.2 Plus
Dvir\GJ17733-PA 304 GJ17733-PA 1..103 1..103 380 62.1 Plus
Dvir\GJ17047-PA 308 GJ17047-PA 40..252 11..226 357 36.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 14:24:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13331-PA 238 GK13331-PA 13..238 6..231 708 59.3 Plus
Dwil\GK23925-PA 304 GK23925-PA 91..304 18..231 673 60.7 Plus
Dwil\GK19038-PA 243 GK19038-PA 20..237 9..226 529 47.2 Plus
Dwil\GK15189-PA 240 GK15189-PA 10..231 9..229 520 45.3 Plus
Dwil\GK23925-PA 304 GK23925-PA 1..99 1..99 394 68.7 Plus
Dwil\GK14950-PA 294 GK14950-PA 24..244 9..229 298 31.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 14:24:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE14717-PA 304 GE14717-PA 92..304 19..231 801 70.4 Plus
Dyak\GE15644-PA 240 GE15644-PA 20..238 9..227 529 48.4 Plus
Dyak\GE14717-PA 304 GE14717-PA 1..99 1..99 507 92.9 Plus
Dyak\GE15633-PA 240 GE15633-PA 4..231 3..229 475 41.5 Plus
Dyak\GE15666-PA 301 GE15666-PA 27..246 9..230 313 32 Plus
Dyak\GE15655-PA 304 GE15655-PA 27..247 9..231 297 30.9 Plus