Clone RE52723 Report

Search the DGRC for RE52723

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:527
Well:23
Vector:pFlc-1
Associated Gene/TranscriptPbp45-RA
Protein status:RE52723.pep: gold
Preliminary Size:1092
Sequenced Size:1343

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG9597 2001-12-14 Blastp of sequenced clone
CG9597 2002-01-01 Sim4 clustering to Release 2
CG9597 2003-01-01 Sim4 clustering to Release 3
CG9597 2008-04-29 Release 5.5 accounting
Pbp45 2008-08-15 Release 5.9 accounting
Pbp45 2008-12-18 5.12 accounting

Clone Sequence Records

RE52723.complete Sequence

1343 bp (1343 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071442

> RE52723.complete
GTATTTTGAGGCTCTTTTGAATGAGAGATGCGCATATATTTCGCGTAATT
AAGATTCAGAATGGAGCTGAATATCTTTGACGACTGCTGGGAGCTGGTGC
AACGATTTCAGCGATTGGTTAATGATGGCGAAAACTGCGAGTTCGAGGTG
TTCTGCCGGTGCTGGCGAGAACTGCAGCTGCAGCACCTCTTCACTGCCCA
GACGAACCACACAGAGGTGATAGCCACCACACTGGCGGCCCTGCATGTGG
CCAAGCGACTGTCGTGCTCCCGACGCACCACCGGGGACGTTTTCCCGGCA
TCTCGCGCTCAAAGGATCGGAGGTTTCTTTCTGCTCTACGTAATCTACTA
CAAGCAGCCCACGCACAACTTTATTAAGATCGAGGTCTCACCGCGCACTT
GGCAAGAACTAACAGACTACGCTCTAGATCTGCGCAAGGATAGTCCGGAG
CGGAAGGACACTCATCAGATCGCCTACATGCTGTGGCGCCTGACCCAGGA
GCAGGCCTTCCGCTTCACCGCGCTCGACTATTGCCAGGGGTTGGACAATC
TGGTGGACTACGACCGTGTGGAGACCGTAGCGGGTGCCAAGGAACAGAGG
CAGAGTGCCTTGATGCAGAAGCAACAGCGTGCGAACGGCGTCAGTCTCAC
ATACGAACTGGAGGGTCTGCGAGCACTGGACCAGGCAAGCCAGCCATTGT
GTGAACTGGAAGCGGCATACAATGCCCAAAAGAAGCAATTGGCGGCTGGT
CATGAGCACGCTTTGCCGCCCTCTCAAATATTCGGCCATTTGCGAGAAGT
CTTTGCCGATATCCAAAGTGTTCTAGGAGCTAGAAAGAGTACTCCAGATG
AGAATTGTACCACAACATCTACAGGCAACCAGTTGGAAGTGCGCCAGAGG
GTGCGGAACAAGGCCATGTACGGCGTCGAGGAACGGGAGCCGCAAAACCA
GGCGGATGAACTAGAAGTGCAGCTGGAGGTCAACGAGACTTATCAACGCC
GCATGTCCTCGGCCACCGTTTTTCAGAGGGAACTTCCAGCAGACGTGCAG
CAAGAGTATGAGATGATTGAGTTTAGTGACGACGAGGAAATGGAAGTGGG
TGAAAGCGAGGAGGTCACGGAAGAAGAACTCAAAGCTATTTTGGATACTT
GAGTTAGTTTATAAAACTTTTACATAATTAAATAACTAGCATTTTTGCGC
GATGTGATCTTGTTTATCTGTTGCACATAAAATATTCATTGTATTTAAGT
ATGTAGGATAGGATATATAACTATATAGGATATAAGTTTCCTAGGCTTTG
CTATTCTTATATAAAGAGTTGAAAAGCAAAAAAAAAAAAAAAA

RE52723.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-RA 1326 Pbp45-RA 1..1325 2..1326 6625 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 11662736..11664042 1326..2 6170 97.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:45 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15838147..15839471 1326..2 6625 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:54
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 15578978..15580302 1326..2 6625 100 Minus
Blast to na_te.dros performed on 2019-03-15 22:47:19 has no hits.

RE52723.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:21 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 11662735..11662788 1274..1327 98 == Minus
chr3R 11662789..11664042 1..1255 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:07 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 61..1152 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:10:41 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 61..1152 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:11 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 61..1152 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:34:52 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 61..1152 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:45 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1092 61..1152 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:40:38 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1325 2..1327 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:10:41 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1325 2..1327 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:11 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 44..1369 1..1327 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:34:53 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 1..1325 2..1327 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:45 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
Pbp45-RA 44..1369 1..1327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:21 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15838146..15839471 1..1327 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:21 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15838146..15839471 1..1327 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:21 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15838146..15839471 1..1327 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:11 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11663868..11665193 1..1327 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:12:07 Download gff for RE52723.complete
Subject Subject Range Query Range Percent Splice Strand
3R 15578977..15580302 1..1327 99   Minus

RE52723.pep Sequence

Translation from 60 to 1151

> RE52723.pep
MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH
TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP
THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF
RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL
EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD
IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE
LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE
EVTEEELKAILDT*

RE52723.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:12:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF16475-PA 382 GF16475-PA 1..333 1..333 1148 63.9 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20333-PA 362 GG20333-PA 1..362 1..363 1684 87.6 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:12:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14314-PA 333 GH14314-PA 1..332 1..334 772 46.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:58:56
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-PA 363 CG9597-PA 1..363 1..363 1885 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI24646-PA 332 GI24646-PA 1..328 1..334 827 48.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:12:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21731-PA 264 GL21731-PA 1..257 1..257 950 65.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:12:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21903-PA 359 GA21903-PA 1..334 1..333 1110 61.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25750-PA 362 GM25750-PA 1..362 1..363 1852 94.8 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:12:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20324-PA 362 GD20324-PA 1..362 1..363 1846 94.5 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ23468-PA 328 GJ23468-PA 1..327 1..334 875 50.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:12:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK19206-PA 341 GK19206-PA 1..340 1..345 925 53.2 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:12:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE26356-PA 362 GE26356-PA 1..362 1..363 1645 85.4 Plus

RE52723.hyp Sequence

Translation from 60 to 1151

> RE52723.hyp
MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH
TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP
THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF
RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL
EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD
IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE
LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE
EVTEEELKAILDT*

RE52723.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
Pbp45-PA 363 CG9597-PA 1..363 1..363 1885 100 Plus