BDGP Sequence Production Resources |
Search the DGRC for RE52723
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 527 |
Well: | 23 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Pbp45-RA |
Protein status: | RE52723.pep: gold |
Preliminary Size: | 1092 |
Sequenced Size: | 1343 |
Gene | Date | Evidence |
---|---|---|
CG9597 | 2001-12-14 | Blastp of sequenced clone |
CG9597 | 2002-01-01 | Sim4 clustering to Release 2 |
CG9597 | 2003-01-01 | Sim4 clustering to Release 3 |
CG9597 | 2008-04-29 | Release 5.5 accounting |
Pbp45 | 2008-08-15 | Release 5.9 accounting |
Pbp45 | 2008-12-18 | 5.12 accounting |
1343 bp (1343 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071442
> RE52723.complete GTATTTTGAGGCTCTTTTGAATGAGAGATGCGCATATATTTCGCGTAATT AAGATTCAGAATGGAGCTGAATATCTTTGACGACTGCTGGGAGCTGGTGC AACGATTTCAGCGATTGGTTAATGATGGCGAAAACTGCGAGTTCGAGGTG TTCTGCCGGTGCTGGCGAGAACTGCAGCTGCAGCACCTCTTCACTGCCCA GACGAACCACACAGAGGTGATAGCCACCACACTGGCGGCCCTGCATGTGG CCAAGCGACTGTCGTGCTCCCGACGCACCACCGGGGACGTTTTCCCGGCA TCTCGCGCTCAAAGGATCGGAGGTTTCTTTCTGCTCTACGTAATCTACTA CAAGCAGCCCACGCACAACTTTATTAAGATCGAGGTCTCACCGCGCACTT GGCAAGAACTAACAGACTACGCTCTAGATCTGCGCAAGGATAGTCCGGAG CGGAAGGACACTCATCAGATCGCCTACATGCTGTGGCGCCTGACCCAGGA GCAGGCCTTCCGCTTCACCGCGCTCGACTATTGCCAGGGGTTGGACAATC TGGTGGACTACGACCGTGTGGAGACCGTAGCGGGTGCCAAGGAACAGAGG CAGAGTGCCTTGATGCAGAAGCAACAGCGTGCGAACGGCGTCAGTCTCAC ATACGAACTGGAGGGTCTGCGAGCACTGGACCAGGCAAGCCAGCCATTGT GTGAACTGGAAGCGGCATACAATGCCCAAAAGAAGCAATTGGCGGCTGGT CATGAGCACGCTTTGCCGCCCTCTCAAATATTCGGCCATTTGCGAGAAGT CTTTGCCGATATCCAAAGTGTTCTAGGAGCTAGAAAGAGTACTCCAGATG AGAATTGTACCACAACATCTACAGGCAACCAGTTGGAAGTGCGCCAGAGG GTGCGGAACAAGGCCATGTACGGCGTCGAGGAACGGGAGCCGCAAAACCA GGCGGATGAACTAGAAGTGCAGCTGGAGGTCAACGAGACTTATCAACGCC GCATGTCCTCGGCCACCGTTTTTCAGAGGGAACTTCCAGCAGACGTGCAG CAAGAGTATGAGATGATTGAGTTTAGTGACGACGAGGAAATGGAAGTGGG TGAAAGCGAGGAGGTCACGGAAGAAGAACTCAAAGCTATTTTGGATACTT GAGTTAGTTTATAAAACTTTTACATAATTAAATAACTAGCATTTTTGCGC GATGTGATCTTGTTTATCTGTTGCACATAAAATATTCATTGTATTTAAGT ATGTAGGATAGGATATATAACTATATAGGATATAAGTTTCCTAGGCTTTG CTATTCTTATATAAAGAGTTGAAAAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pbp45-RA | 1326 | Pbp45-RA | 1..1325 | 2..1326 | 6625 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 11662736..11664042 | 1326..2 | 6170 | 97.9 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 15838147..15839471 | 1326..2 | 6625 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 15578978..15580302 | 1326..2 | 6625 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 11662735..11662788 | 1274..1327 | 98 | == | Minus |
chr3R | 11662789..11664042 | 1..1255 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1092 | 61..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1092 | 61..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1092 | 61..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1092 | 61..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1092 | 61..1152 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1325 | 2..1327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1325 | 2..1327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 44..1369 | 1..1327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 1..1325 | 2..1327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Pbp45-RA | 44..1369 | 1..1327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15838146..15839471 | 1..1327 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15838146..15839471 | 1..1327 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15838146..15839471 | 1..1327 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 11663868..11665193 | 1..1327 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 15578977..15580302 | 1..1327 | 99 | Minus |
Translation from 60 to 1151
> RE52723.pep MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE EVTEEELKAILDT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF16475-PA | 382 | GF16475-PA | 1..333 | 1..333 | 1148 | 63.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20333-PA | 362 | GG20333-PA | 1..362 | 1..363 | 1684 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14314-PA | 333 | GH14314-PA | 1..332 | 1..334 | 772 | 46.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pbp45-PA | 363 | CG9597-PA | 1..363 | 1..363 | 1885 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24646-PA | 332 | GI24646-PA | 1..328 | 1..334 | 827 | 48.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21731-PA | 264 | GL21731-PA | 1..257 | 1..257 | 950 | 65.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21903-PA | 359 | GA21903-PA | 1..334 | 1..333 | 1110 | 61.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM25750-PA | 362 | GM25750-PA | 1..362 | 1..363 | 1852 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20324-PA | 362 | GD20324-PA | 1..362 | 1..363 | 1846 | 94.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23468-PA | 328 | GJ23468-PA | 1..327 | 1..334 | 875 | 50.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK19206-PA | 341 | GK19206-PA | 1..340 | 1..345 | 925 | 53.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE26356-PA | 362 | GE26356-PA | 1..362 | 1..363 | 1645 | 85.4 | Plus |
Translation from 60 to 1151
> RE52723.hyp MELNIFDDCWELVQRFQRLVNDGENCEFEVFCRCWRELQLQHLFTAQTNH TEVIATTLAALHVAKRLSCSRRTTGDVFPASRAQRIGGFFLLYVIYYKQP THNFIKIEVSPRTWQELTDYALDLRKDSPERKDTHQIAYMLWRLTQEQAF RFTALDYCQGLDNLVDYDRVETVAGAKEQRQSALMQKQQRANGVSLTYEL EGLRALDQASQPLCELEAAYNAQKKQLAAGHEHALPPSQIFGHLREVFAD IQSVLGARKSTPDENCTTTSTGNQLEVRQRVRNKAMYGVEEREPQNQADE LEVQLEVNETYQRRMSSATVFQRELPADVQQEYEMIEFSDDEEMEVGESE EVTEEELKAILDT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Pbp45-PA | 363 | CG9597-PA | 1..363 | 1..363 | 1885 | 100 | Plus |