BDGP Sequence Production Resources |
Search the DGRC for RE52740
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 527 |
Well: | 40 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Orc6-RA |
Protein status: | RE52740.pep: gold |
Preliminary Size: | 899 |
Sequenced Size: | 963 |
Gene | Date | Evidence |
---|---|---|
CG1584 | 2001-12-14 | Blastp of sequenced clone |
CG1584 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1584 | 2003-01-01 | Sim4 clustering to Release 3 |
Orc6 | 2008-04-29 | Release 5.5 accounting |
Orc6 | 2008-08-15 | Release 5.9 accounting |
Orc6 | 2008-12-18 | 5.12 accounting |
963 bp (963 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071443
> RE52740.complete TGGTTGTACTTTATTTTGGTTTTAACGACGCACGACTGGAATTTCAGTCT ATTGTTAATAACTACAATGACTACCTTAATAGAACAGTTAATTACGAAAA TGGGCCTAAGGGAGGAGCCAAACGTGCTAGAGAAAACCACCGAACTAGTA CGCCTCCTGGAACTGCGCTCCACGAATGTCCCTCTGCAGATCAACGAGTA CGGAAAGATAGTGCTGTGTGCGGATCTCGCTTCCTGCATGATTGGGATCG CTTTCGACAAGGAGCAGGCACTGAAATTGTCAGGATTGCGAAAGAGCCAA TACCTCAACAACAAGCGGATGTTCGAGAAGCTACTGGACCTAAACAAACT GGCTAGCGTGAATGACATCTGTGTCCAGCTGGGTCTCAACGAAGTTGCCC GCAAGGCGGAAGAGCTAATGACTCTCTTCAAGGGCGTAGCGGCCACCGAG GACATGGGTACCGACACCAGCCATCCTCAGTACGCCACCATGGCCGTGTT CCAGGCCTGCCGCCTGCTCAAAAAGAAGGTTTCGAAATCAAAGCTCATGC CCTTCAGTAATTTGCGACCCTCCCAGTTTCAACTGCTCGAGCAGCAGTGG GAACGCATGATAGCTAAGCACCACAAGGAGAGCAAAGTACCATCTAGCAC CGATATGGAGGGTAAACTTAAGGAGAACCAGAATGAGAATATCAAGGGTC ATGAGGCAAAAAAGGCACATAAGCCCCCACCGGAGGACTACGAAATATGG AAGGCGCGAATGTTGGCCAAGGCGCAGGCCAAATTGAAGGAATTAGAAGC ATCCCAATCGCATATGGATAGCCAGCTTCTCGAGGCTTAGGCATTTATAT TTTACATCTTTAAACATTTCCTAGTGAAATCCAGTTTGAATTAATTACTT ATTATATAACTTATTTATTAAACTGAACATTCTTATTAGTTTTAAGCAAA AAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 1916..2009 | 848..942 | 112 | 63.3 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 5732937..5733752 | 132..947 | 99 | <- | Minus |
chr2R | 5733809..5733938 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 1..774 | 67..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 1..774 | 67..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 1..774 | 67..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 1..774 | 67..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 1..774 | 67..840 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 2..945 | 3..947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 2..945 | 3..946 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 26..971 | 1..947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 2..945 | 3..947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Orc6-RA | 26..971 | 1..947 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9845458..9846273 | 132..947 | 99 | <- | Minus |
2R | 9846330..9846459 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9845458..9846273 | 132..947 | 99 | <- | Minus |
2R | 9846330..9846459 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9845458..9846273 | 132..947 | 99 | <- | Minus |
2R | 9846330..9846459 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 5732963..5733778 | 132..947 | 99 | <- | Minus |
arm_2R | 5733835..5733964 | 1..131 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 9846657..9847472 | 132..947 | 99 | <- | Minus |
2R | 9847529..9847658 | 1..131 | 99 | Minus |
Translation from 3 to 839
> RE52740.hyp LYFILVLTTHDWNFSLLLITTMTTLIEQLITKMGLREEPNVLEKTTELVR LLELRSTNVPLQINEYGKIVLCADLASCMIGIAFDKEQALKLSGLRKSQY LNNKRMFEKLLDLNKLASVNDICVQLGLNEVARKAEELMTLFKGVAATED MGTDTSHPQYATMAVFQACRLLKKKVSKSKLMPFSNLRPSQFQLLEQQWE RMIAKHHKESKVPSSTDMEGKLKENQNENIKGHEAKKAHKPPPEDYEIWK ARMLAKAQAKLKELEASQSHMDSQLLEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc6-PA | 257 | CG1584-PA | 1..257 | 22..278 | 1300 | 100 | Plus |
Translation from 66 to 839
> RE52740.pep MTTLIEQLITKMGLREEPNVLEKTTELVRLLELRSTNVPLQINEYGKIVL CADLASCMIGIAFDKEQALKLSGLRKSQYLNNKRMFEKLLDLNKLASVND ICVQLGLNEVARKAEELMTLFKGVAATEDMGTDTSHPQYATMAVFQACRL LKKKVSKSKLMPFSNLRPSQFQLLEQQWERMIAKHHKESKVPSSTDMEGK LKENQNENIKGHEAKKAHKPPPEDYEIWKARMLAKAQAKLKELEASQSHM DSQLLEA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13143-PA | 253 | GF13143-PA | 1..248 | 1..248 | 1030 | 78.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25256-PA | 257 | GG25256-PA | 1..257 | 1..257 | 1206 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21326-PA | 246 | GH21326-PA | 1..245 | 1..251 | 798 | 67.6 | Plus |
Dgri\GH23282-PA | 226 | GH23282-PA | 3..225 | 23..251 | 703 | 65.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Orc6-PA | 257 | CG1584-PA | 1..257 | 1..257 | 1300 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20744-PA | 243 | GI20744-PA | 1..240 | 1..244 | 767 | 67.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL10239-PA | 252 | GL10239-PA | 1..248 | 1..249 | 963 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA24134-PA | 252 | GA24134-PA | 1..248 | 1..249 | 963 | 78.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24395-PA | 246 | GM24395-PA | 1..245 | 12..256 | 1176 | 95.1 | Plus |
Dsec\GM20574-PA | 77 | GM20574-PA | 1..76 | 181..256 | 344 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10047-PA | 246 | GD10047-PA | 1..245 | 12..256 | 1248 | 96.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20481-PA | 247 | GJ20481-PA | 1..238 | 1..245 | 773 | 72.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK20964-PA | 254 | GK20964-PA | 1..248 | 1..246 | 946 | 73.4 | Plus |