Clone RE52776 Report

Search the DGRC for RE52776

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:527
Well:76
Vector:pFlc-1
Associated Gene/TranscriptHsl-RA
Protein status:RE52776.pep: gold
Preliminary Size:2781
Sequenced Size:3535

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG11055 2002-12-02 Blastp of sequenced clone
CG11055 2003-01-01 Sim4 clustering to Release 3
CG11055 2008-04-29 Release 5.5 accounting
CG11055 2008-08-15 Release 5.9 accounting
CG11055 2008-12-18 5.12 accounting

Clone Sequence Records

RE52776.complete Sequence

3535 bp (3535 high quality bases) assembled on 2002-12-02

GenBank Submission: BT003200

> RE52776.complete
GTTCAATCGGTGCTAAGTCCTATAAGAATAGTAATGTTTGGAGCCGCAAT
AGGTGGACCAATTAAAAATGCATTGAGCTAAAAGCAACGAGTTAAGAATC
TAACACAATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCCCCCAGTTTA
TTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGACGACGGCCCA
CAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGCCGACCTGGA
GGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACGCCGCCTTCT
TTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCCGCCCACATT
GCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCAGCAGATCGA
TGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGGGCAATGGAT
ACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCATGGCATTAGC
ATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTTCCGCAAGAA
GTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGTCGTCGCTGT
GCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCGGCTAGCACG
GGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCTCTTCGAGCT
GGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCCTGGGCTTTC
AGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGCATCAGCATG
GCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGGCCCCATCGT
TAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTATGAATCCGG
AACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCTAAGATAGAC
TTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGATGCACAAGCT
GCCCAGCATTGTGGGCAGCTCCATTAAGGTAAACCGGCTCATCGAATTGC
CAGCCGAGCCGCTAAAGCTGCCTCGCCGAAAGAATTTCAAGGCATCGGAC
AATCTCAGCAGTGACGTTAACCAAAACCAAGGCGATGGTGATTTTGTGGA
GATTCCCGTGCCCACGGCACATTTGGGACCTGGTTTACCGGTCTCTGTTC
GCTTGCTGAGCGCGAGACGACGTTCGGGAATGCTGGGCGAGGGTCGCTAT
CGCGGCTGGCACAAGCCCATTCCGCCAAGTCCTTCGATTCTGTTTCACTG
CCATGGCGGTGGCTTTGTGGCCCAATCGTCCAAGTCCCACGAACTGTATT
TGCGCGACTGGGCCGTGGCACTGGACTGTCCTATTCTCTCGGTGGATTAC
AGCCTAGCTCCTGAGGCGCCATTTCCACGCGCCCTGCAAGAAGTTTACTA
CGCTTACTGCTGGCTTCTGAACAATACCGAACTCCTAGGCACAACAGCTG
AGCGAGTTGTATGCGCAGGTGACTCGGCTGGGGCAAATCTGTCAATTGGA
GTAGCCCTCAAGTGCATTGAGCAGGGAGTTCGAGTGCCAGATGGTCTGTT
TCTGGCCTACTGCCCAACTCTCGTCAGCTTTGTGCCCAGTCCGGCCCGCC
TTCTCTGTTTGATGGATCCCCTGCTGCCTTTCGGCTTCATGATGCGCTGC
CTTCGTGCCTATGCCGCTCCCGCCCAGGAGACACTTCAGCAGAATGCCAA
GCAAGTCGAGGATGCCGCCCAGATACGCAATGTCCCCAAGTCGAACGTGG
GAAGCTTGAACTCCAGTCGCCGCACCTCGATGGCCAGAAGTCCGCTTTCG
CCGCTGGAAGCCAGCATGAACCCAGATGACGAAAGCAGCGACACCTTTGC
CAGTGCCTCAGCCTCTTACCACAGCCAGACGGTGGAGCGTACCGATCTCC
CCCACACCGAAGGCGACAACAGCTCGTGCGTCTCGTTCGAGGATGATTCA
CAGCCCATTGTGCACTACCCAATCGAAATATCAGCCGACCCACCTAAGGA
TACCGCCTCTGCAGCCTATATTGACAATTTTCTGGACAAGTATCTCATTG
ACACGGCCACAATGGAGGTAACCGAAGAGACAGCTCCCGAAGCGGTGCAA
GCGCAGGCAAATGGACATGCGAAGATCAGTTCCGATGATGATATTCTAGT
GGAGACTGGTCGGGATCTTGTTGCAATAGATACGCTGCAAGGCCGCCTGC
AGGAAGCCGTCAACAACATAACCAACACCTTGACGCGCTGCACGCAGTCC
TACGAGATTCACGGAAGCAACGTGATGGCTCAACAGGATGTGCGCAACAT
GGACGCACTGATAGCACGGAGTCCCAGCGAGGAGTTTGCATTCGATGTGC
CTAAGGATCCATTCCTGTCGCCGTACTGGGCCAGTGATGAGTGGCTTTCC
CAACTGCCGGAGACCAAAATACTTACACTTAACATGGACCCCTGTCTGGA
TGATTGCGTTATGTTTGCCAAGAAACTGAAGCGGCTTGGGCGACAAGTTG
ACTTGGAAATACTTGAGGGGTTGCCGCACGGATTCCTAAATTTCACAATG
TTATCCAACGAAGCCATGGAGGGCTCAAAGAAGTGCATCAAATCTCTACA
GACGTTGCTTCAAACCGATTCGAAGACCAAGAACATTGACAAAGCCAACT
CGATGGACGAGGAGGAGTCCTCCAGTCCCAGTGCAAGTCTAGCCGCTTCA
TAGGATGAATTTCCATCGGTCTATATGCCTATTGGACTGGAGAACTGAGA
CCCCGACAATGAGCAATATTAACCAATGGCAGATTGTAAGTGGCAATGGG
ATTTCACAATCACTGTAAAATTTTGTCACCTGCATTTATACTCCCATTGG
CCATTTCTCCACTCACATAGGCGTGTAAATCGAATTTTGTTATGCGCAGG
AACAATTTGAATTGTTCATTGTTATACGCACTTTCTTGCTTTTTATTACT
ACGTATATGTAATCTCAAAGGTTTTTTTTATACAATTTTATATGACACAG
CTTTCTATGTTTTATATACTCACAAACTAAGTATAGGATACGTATGTATG
TAGCTTCTAGCATAAGCAAGCCAAGTATGCAAGTATTGGAAGCGTGTAAA
CACGCATTATTTATTACATGTATTTACATACGATTAATGCTCTTGAATGC
AGGCACACACTCGCTTAAAGCTCTTTGTTGCAAAACTCCCGACTATGTGC
CTCATACGGAACGAGTACTTATACACAGTGAATAGAATAATCGCCCATTA
TTACCCTTGATTTAGAACTCCCCAATGGTATGTCCAGATTTTCTGCAGCT
GCGGAGGCTAACAAACTTCAATGTCGGAGATATGCCAAGGTTTTTTGTCT
ATCCCACGCCAAGGTGTTTGATAAACCACTACTCTTAATATGTATATGTT
TGCAATCTCTCTCTCCTTAAACGATACCCAGTGTTATATATGGAATGCGA
ATAAATGGTTATTACGCCCTAAAAAAAAAAAAAAA

RE52776.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:31:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11055-RB 3564 CG11055-RB 30..3553 1..3524 17575 99.9 Plus
CG11055.a 3651 CG11055.a 223..3645 102..3524 17085 99.9 Plus
CG11055-RC 3626 CG11055-RC 195..3617 102..3524 17085 99.9 Plus
CG11055.a 3651 CG11055.a 1..69 33..101 345 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 23:11:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 16145228..16147600 102..2474 11700 99.5 Plus
chr2R 21145070 chr2R 16147847..16148763 2600..3520 4325 98.7 Plus
chr2R 21145070 chr2R 16147662..16147791 2475..2604 620 98.5 Plus
chr2R 21145070 chr2R 16144693..16144793 1..101 475 98 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:49 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 23:11:32
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20258187..20260559 102..2474 11865 100 Plus
2R 25286936 2R 20260806..20261730 2600..3524 4595 99.8 Plus
2R 25286936 2R 20260621..20260750 2475..2604 635 99.2 Plus
2R 25286936 2R 20257652..20257752 1..101 490 99 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 20259386..20261758 102..2474 11865 100 Plus
2R 25260384 2R 20262005..20262929 2600..3524 4595 99.7 Plus
2R 25260384 2R 20261820..20261949 2475..2604 635 99.2 Plus
2R 25260384 2R 20258851..20258951 1..101 490 99 Plus
Blast to na_te.dros performed on 2019-03-16 23:11:32 has no hits.

RE52776.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 23:12:11 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 16144693..16144793 1..101 98 -> Plus
chr2R 16145228..16147600 102..2474 99 -> Plus
chr2R 16147662..16147787 2475..2600 99 -> Plus
chr2R 16147848..16148763 2601..3520 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:11 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 1..2646 108..2753 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:02:57 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 1..2646 108..2753 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 18:19:38 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 1..2646 108..2753 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:53:18 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RC 1..2646 108..2753 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:47:12 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 1..2646 108..2753 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:21:20 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RB 1..3520 1..3520 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:02:57 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RB 1..3520 1..3520 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:19:38 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 3..3522 1..3520 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:53:18 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
CG11055-RB 1..3520 1..3520 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:47:12 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
Hsl-RB 3..3522 1..3520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:11 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20260621..20260746 2475..2600 100 -> Plus
2R 20257652..20257752 1..101 99 -> Plus
2R 20258187..20260559 102..2474 100 -> Plus
2R 20260807..20261726 2601..3520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:11 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20260621..20260746 2475..2600 100 -> Plus
2R 20257652..20257752 1..101 99 -> Plus
2R 20258187..20260559 102..2474 100 -> Plus
2R 20260807..20261726 2601..3520 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 23:12:11 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20260621..20260746 2475..2600 100 -> Plus
2R 20257652..20257752 1..101 99 -> Plus
2R 20258187..20260559 102..2474 100 -> Plus
2R 20260807..20261726 2601..3520 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:19:38 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16145157..16145257 1..101 99 -> Plus
arm_2R 16145692..16148064 102..2474 100 -> Plus
arm_2R 16148126..16148251 2475..2600 100 -> Plus
arm_2R 16148312..16149231 2601..3520 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:25:23 Download gff for RE52776.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20259386..20261758 102..2474 100 -> Plus
2R 20261820..20261945 2475..2600 100 -> Plus
2R 20262006..20262925 2601..3520 99   Plus
2R 20258851..20258951 1..101 99 -> Plus

RE52776.pep Sequence

Translation from 107 to 2752

> RE52776.pep
MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT
YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF
AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY
MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD
TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT
TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS
IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP
VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG
GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY
CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA
YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV
EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA
SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA
SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET
GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA
LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC
VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL
LQTDSKTKNIDKANSMDEEESSSPSASLAAS*

RE52776.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 06:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11751-PA 880 GF11751-PA 1..866 1..861 4081 87 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 06:38:00
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG22019-PA 881 GG22019-PA 1..881 1..881 4613 96.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 06:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH23035-PA 892 GH23035-PA 15..878 16..868 3466 76.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-PC 881 CG11055-PC 1..881 1..881 4608 100 Plus
Hsl-PA 881 CG11055-PA 1..881 1..881 4608 100 Plus
Hsl-PB 881 CG11055-PB 1..881 1..881 4608 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 06:38:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI21105-PA 885 GI21105-PA 1..865 1..861 3415 75.3 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 06:38:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL16902-PA 867 GL16902-PA 1..866 1..853 3957 84.2 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 06:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10731-PA 867 GA10731-PA 1..866 1..853 3946 83.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 06:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM22000-PA 882 GM22000-PA 1..882 1..881 4652 97.5 Plus
Dsec\GM23248-PA 214 GM23248-PA 1..214 669..881 1092 97.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 06:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11499-PA 882 GD11499-PA 1..882 1..881 4667 97.8 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 06:38:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20953-PA 888 GJ20953-PA 1..874 1..868 3469 76.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 06:38:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15908-PA 867 GK15908-PA 23..867 18..856 3586 79.3 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 06:38:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE12096-PA 881 GE12096-PA 1..881 1..881 4610 96.6 Plus

RE52776.hyp Sequence

Translation from 107 to 2752

> RE52776.hyp
MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT
YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF
AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY
MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD
TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT
TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS
IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP
VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG
GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY
CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA
YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV
EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA
SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA
SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET
GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA
LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC
VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL
LQTDSKTKNIDKANSMDEEESSSPSASLAAS*

RE52776.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:33:51
Subject Length Description Subject Range Query Range Score Percent Strand
Hsl-PC 881 CG11055-PC 1..881 1..881 4608 100 Plus
Hsl-PA 881 CG11055-PA 1..881 1..881 4608 100 Plus
Hsl-PB 881 CG11055-PB 1..881 1..881 4608 100 Plus