BDGP Sequence Production Resources |
Search the DGRC for RE52776
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 527 |
Well: | 76 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Hsl-RA |
Protein status: | RE52776.pep: gold |
Preliminary Size: | 2781 |
Sequenced Size: | 3535 |
Gene | Date | Evidence |
---|---|---|
CG11055 | 2002-12-02 | Blastp of sequenced clone |
CG11055 | 2003-01-01 | Sim4 clustering to Release 3 |
CG11055 | 2008-04-29 | Release 5.5 accounting |
CG11055 | 2008-08-15 | Release 5.9 accounting |
CG11055 | 2008-12-18 | 5.12 accounting |
3535 bp (3535 high quality bases) assembled on 2002-12-02
GenBank Submission: BT003200
> RE52776.complete GTTCAATCGGTGCTAAGTCCTATAAGAATAGTAATGTTTGGAGCCGCAAT AGGTGGACCAATTAAAAATGCATTGAGCTAAAAGCAACGAGTTAAGAATC TAACACAATGATTGACGCGGCTTCCGCCGAGCGGGCAAGCCCCCAGTTTA TTGCCCTCTTCAATGACAATCTGAAACTGGGCCACGAGGACGACGGCCCA CAGGCAGTCAATGGAAAGGACACCCACCAGCACGTACCCGCCGACCTGGA GGCGACCTATGGAACCTTGTACGCCGCCTGCCAGGATCACGCCGCCTTCT TTGCCCGGGACCACACCGAATTCGGCCAGCGCCTGCATGCCGCCCACATT GCCTGGCAGGACTTCATTGTCTTGGCCAACCGACTGGTCCAGCAGATCGA TGCCTTCGCCCACGAGTACGATTTTGACGAGCAGACGCCGGGCAATGGAT ACAGGAGCTTCATCTACGTGACCAACGCCTGCATCGCGCATGGCATTAGC ATCTGCCAGCAGCTGACAGCCACCCGTTCCACCATATTCTTCCGCAAGAA GTTCTACATGAAGGAGGTTGAGGCCTGTTCCCAGCTGTTGTCGTCGCTGT GCACATGTCTGCAGTACCTGCTGATCCTTCGCCAGTGGTCGGCTAGCACG GGTGATCTGTTCGCATGCGGAAATCACACTGCCGAGCAGCTCTTCGAGCT GGGCGACACCATCAACCAGTATTGCTTTTACGGACGCTGCCTGGGCTTTC AGTATGGCGACTCGATACGCGGAGTTCTCCGATTCCTCGGCATCAGCATG GCCAGCTACTCGGAGTCGTACTATTCGCAAGAGGGCGACGGCCCCATCGT TAAGACCACACGCAGCCTGTGGACCAGCGGCAAGTATCTTATGAATCCGG AACTGCGCGCCCGTCGCATCGTTAACATCTCGCAGAATGCTAAGATAGAC TTTTGCAAATCCTTTTGGTTTCTGGCCGAGTCCGAGATGATGCACAAGCT GCCCAGCATTGTGGGCAGCTCCATTAAGGTAAACCGGCTCATCGAATTGC CAGCCGAGCCGCTAAAGCTGCCTCGCCGAAAGAATTTCAAGGCATCGGAC AATCTCAGCAGTGACGTTAACCAAAACCAAGGCGATGGTGATTTTGTGGA GATTCCCGTGCCCACGGCACATTTGGGACCTGGTTTACCGGTCTCTGTTC GCTTGCTGAGCGCGAGACGACGTTCGGGAATGCTGGGCGAGGGTCGCTAT CGCGGCTGGCACAAGCCCATTCCGCCAAGTCCTTCGATTCTGTTTCACTG CCATGGCGGTGGCTTTGTGGCCCAATCGTCCAAGTCCCACGAACTGTATT TGCGCGACTGGGCCGTGGCACTGGACTGTCCTATTCTCTCGGTGGATTAC AGCCTAGCTCCTGAGGCGCCATTTCCACGCGCCCTGCAAGAAGTTTACTA CGCTTACTGCTGGCTTCTGAACAATACCGAACTCCTAGGCACAACAGCTG AGCGAGTTGTATGCGCAGGTGACTCGGCTGGGGCAAATCTGTCAATTGGA GTAGCCCTCAAGTGCATTGAGCAGGGAGTTCGAGTGCCAGATGGTCTGTT TCTGGCCTACTGCCCAACTCTCGTCAGCTTTGTGCCCAGTCCGGCCCGCC TTCTCTGTTTGATGGATCCCCTGCTGCCTTTCGGCTTCATGATGCGCTGC CTTCGTGCCTATGCCGCTCCCGCCCAGGAGACACTTCAGCAGAATGCCAA GCAAGTCGAGGATGCCGCCCAGATACGCAATGTCCCCAAGTCGAACGTGG GAAGCTTGAACTCCAGTCGCCGCACCTCGATGGCCAGAAGTCCGCTTTCG CCGCTGGAAGCCAGCATGAACCCAGATGACGAAAGCAGCGACACCTTTGC CAGTGCCTCAGCCTCTTACCACAGCCAGACGGTGGAGCGTACCGATCTCC CCCACACCGAAGGCGACAACAGCTCGTGCGTCTCGTTCGAGGATGATTCA CAGCCCATTGTGCACTACCCAATCGAAATATCAGCCGACCCACCTAAGGA TACCGCCTCTGCAGCCTATATTGACAATTTTCTGGACAAGTATCTCATTG ACACGGCCACAATGGAGGTAACCGAAGAGACAGCTCCCGAAGCGGTGCAA GCGCAGGCAAATGGACATGCGAAGATCAGTTCCGATGATGATATTCTAGT GGAGACTGGTCGGGATCTTGTTGCAATAGATACGCTGCAAGGCCGCCTGC AGGAAGCCGTCAACAACATAACCAACACCTTGACGCGCTGCACGCAGTCC TACGAGATTCACGGAAGCAACGTGATGGCTCAACAGGATGTGCGCAACAT GGACGCACTGATAGCACGGAGTCCCAGCGAGGAGTTTGCATTCGATGTGC CTAAGGATCCATTCCTGTCGCCGTACTGGGCCAGTGATGAGTGGCTTTCC CAACTGCCGGAGACCAAAATACTTACACTTAACATGGACCCCTGTCTGGA TGATTGCGTTATGTTTGCCAAGAAACTGAAGCGGCTTGGGCGACAAGTTG ACTTGGAAATACTTGAGGGGTTGCCGCACGGATTCCTAAATTTCACAATG TTATCCAACGAAGCCATGGAGGGCTCAAAGAAGTGCATCAAATCTCTACA GACGTTGCTTCAAACCGATTCGAAGACCAAGAACATTGACAAAGCCAACT CGATGGACGAGGAGGAGTCCTCCAGTCCCAGTGCAAGTCTAGCCGCTTCA TAGGATGAATTTCCATCGGTCTATATGCCTATTGGACTGGAGAACTGAGA CCCCGACAATGAGCAATATTAACCAATGGCAGATTGTAAGTGGCAATGGG ATTTCACAATCACTGTAAAATTTTGTCACCTGCATTTATACTCCCATTGG CCATTTCTCCACTCACATAGGCGTGTAAATCGAATTTTGTTATGCGCAGG AACAATTTGAATTGTTCATTGTTATACGCACTTTCTTGCTTTTTATTACT ACGTATATGTAATCTCAAAGGTTTTTTTTATACAATTTTATATGACACAG CTTTCTATGTTTTATATACTCACAAACTAAGTATAGGATACGTATGTATG TAGCTTCTAGCATAAGCAAGCCAAGTATGCAAGTATTGGAAGCGTGTAAA CACGCATTATTTATTACATGTATTTACATACGATTAATGCTCTTGAATGC AGGCACACACTCGCTTAAAGCTCTTTGTTGCAAAACTCCCGACTATGTGC CTCATACGGAACGAGTACTTATACACAGTGAATAGAATAATCGCCCATTA TTACCCTTGATTTAGAACTCCCCAATGGTATGTCCAGATTTTCTGCAGCT GCGGAGGCTAACAAACTTCAATGTCGGAGATATGCCAAGGTTTTTTGTCT ATCCCACGCCAAGGTGTTTGATAAACCACTACTCTTAATATGTATATGTT TGCAATCTCTCTCTCCTTAAACGATACCCAGTGTTATATATGGAATGCGA ATAAATGGTTATTACGCCCTAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG11055-RB | 3564 | CG11055-RB | 30..3553 | 1..3524 | 17575 | 99.9 | Plus |
CG11055.a | 3651 | CG11055.a | 223..3645 | 102..3524 | 17085 | 99.9 | Plus |
CG11055-RC | 3626 | CG11055-RC | 195..3617 | 102..3524 | 17085 | 99.9 | Plus |
CG11055.a | 3651 | CG11055.a | 1..69 | 33..101 | 345 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 16145228..16147600 | 102..2474 | 11700 | 99.5 | Plus |
chr2R | 21145070 | chr2R | 16147847..16148763 | 2600..3520 | 4325 | 98.7 | Plus |
chr2R | 21145070 | chr2R | 16147662..16147791 | 2475..2604 | 620 | 98.5 | Plus |
chr2R | 21145070 | chr2R | 16144693..16144793 | 1..101 | 475 | 98 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 20258187..20260559 | 102..2474 | 11865 | 100 | Plus |
2R | 25286936 | 2R | 20260806..20261730 | 2600..3524 | 4595 | 99.8 | Plus |
2R | 25286936 | 2R | 20260621..20260750 | 2475..2604 | 635 | 99.2 | Plus |
2R | 25286936 | 2R | 20257652..20257752 | 1..101 | 490 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 20259386..20261758 | 102..2474 | 11865 | 100 | Plus |
2R | 25260384 | 2R | 20262005..20262929 | 2600..3524 | 4595 | 99.7 | Plus |
2R | 25260384 | 2R | 20261820..20261949 | 2475..2604 | 635 | 99.2 | Plus |
2R | 25260384 | 2R | 20258851..20258951 | 1..101 | 490 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 16144693..16144793 | 1..101 | 98 | -> | Plus |
chr2R | 16145228..16147600 | 102..2474 | 99 | -> | Plus |
chr2R | 16147662..16147787 | 2475..2600 | 99 | -> | Plus |
chr2R | 16147848..16148763 | 2601..3520 | 98 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RC | 1..2646 | 108..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RC | 1..2646 | 108..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hsl-RB | 1..2646 | 108..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RC | 1..2646 | 108..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hsl-RB | 1..2646 | 108..2753 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RB | 1..3520 | 1..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RB | 1..3520 | 1..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hsl-RB | 3..3522 | 1..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG11055-RB | 1..3520 | 1..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Hsl-RB | 3..3522 | 1..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20260621..20260746 | 2475..2600 | 100 | -> | Plus |
2R | 20257652..20257752 | 1..101 | 99 | -> | Plus |
2R | 20258187..20260559 | 102..2474 | 100 | -> | Plus |
2R | 20260807..20261726 | 2601..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20260621..20260746 | 2475..2600 | 100 | -> | Plus |
2R | 20257652..20257752 | 1..101 | 99 | -> | Plus |
2R | 20258187..20260559 | 102..2474 | 100 | -> | Plus |
2R | 20260807..20261726 | 2601..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20260621..20260746 | 2475..2600 | 100 | -> | Plus |
2R | 20257652..20257752 | 1..101 | 99 | -> | Plus |
2R | 20258187..20260559 | 102..2474 | 100 | -> | Plus |
2R | 20260807..20261726 | 2601..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 16145157..16145257 | 1..101 | 99 | -> | Plus |
arm_2R | 16145692..16148064 | 102..2474 | 100 | -> | Plus |
arm_2R | 16148126..16148251 | 2475..2600 | 100 | -> | Plus |
arm_2R | 16148312..16149231 | 2601..3520 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 20259386..20261758 | 102..2474 | 100 | -> | Plus |
2R | 20261820..20261945 | 2475..2600 | 100 | -> | Plus |
2R | 20262006..20262925 | 2601..3520 | 99 | Plus | |
2R | 20258851..20258951 | 1..101 | 99 | -> | Plus |
Translation from 107 to 2752
> RE52776.pep MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL LQTDSKTKNIDKANSMDEEESSSPSASLAAS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11751-PA | 880 | GF11751-PA | 1..866 | 1..861 | 4081 | 87 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22019-PA | 881 | GG22019-PA | 1..881 | 1..881 | 4613 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH23035-PA | 892 | GH23035-PA | 15..878 | 16..868 | 3466 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Hsl-PC | 881 | CG11055-PC | 1..881 | 1..881 | 4608 | 100 | Plus |
Hsl-PA | 881 | CG11055-PA | 1..881 | 1..881 | 4608 | 100 | Plus |
Hsl-PB | 881 | CG11055-PB | 1..881 | 1..881 | 4608 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI21105-PA | 885 | GI21105-PA | 1..865 | 1..861 | 3415 | 75.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL16902-PA | 867 | GL16902-PA | 1..866 | 1..853 | 3957 | 84.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10731-PA | 867 | GA10731-PA | 1..866 | 1..853 | 3946 | 83.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22000-PA | 882 | GM22000-PA | 1..882 | 1..881 | 4652 | 97.5 | Plus |
Dsec\GM23248-PA | 214 | GM23248-PA | 1..214 | 669..881 | 1092 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11499-PA | 882 | GD11499-PA | 1..882 | 1..881 | 4667 | 97.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20953-PA | 888 | GJ20953-PA | 1..874 | 1..868 | 3469 | 76.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15908-PA | 867 | GK15908-PA | 23..867 | 18..856 | 3586 | 79.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE12096-PA | 881 | GE12096-PA | 1..881 | 1..881 | 4610 | 96.6 | Plus |
Translation from 107 to 2752
> RE52776.hyp MIDAASAERASPQFIALFNDNLKLGHEDDGPQAVNGKDTHQHVPADLEAT YGTLYAACQDHAAFFARDHTEFGQRLHAAHIAWQDFIVLANRLVQQIDAF AHEYDFDEQTPGNGYRSFIYVTNACIAHGISICQQLTATRSTIFFRKKFY MKEVEACSQLLSSLCTCLQYLLILRQWSASTGDLFACGNHTAEQLFELGD TINQYCFYGRCLGFQYGDSIRGVLRFLGISMASYSESYYSQEGDGPIVKT TRSLWTSGKYLMNPELRARRIVNISQNAKIDFCKSFWFLAESEMMHKLPS IVGSSIKVNRLIELPAEPLKLPRRKNFKASDNLSSDVNQNQGDGDFVEIP VPTAHLGPGLPVSVRLLSARRRSGMLGEGRYRGWHKPIPPSPSILFHCHG GGFVAQSSKSHELYLRDWAVALDCPILSVDYSLAPEAPFPRALQEVYYAY CWLLNNTELLGTTAERVVCAGDSAGANLSIGVALKCIEQGVRVPDGLFLA YCPTLVSFVPSPARLLCLMDPLLPFGFMMRCLRAYAAPAQETLQQNAKQV EDAAQIRNVPKSNVGSLNSSRRTSMARSPLSPLEASMNPDDESSDTFASA SASYHSQTVERTDLPHTEGDNSSCVSFEDDSQPIVHYPIEISADPPKDTA SAAYIDNFLDKYLIDTATMEVTEETAPEAVQAQANGHAKISSDDDILVET GRDLVAIDTLQGRLQEAVNNITNTLTRCTQSYEIHGSNVMAQQDVRNMDA LIARSPSEEFAFDVPKDPFLSPYWASDEWLSQLPETKILTLNMDPCLDDC VMFAKKLKRLGRQVDLEILEGLPHGFLNFTMLSNEAMEGSKKCIKSLQTL LQTDSKTKNIDKANSMDEEESSSPSASLAAS*