Clone RE52814 Report

Search the DGRC for RE52814

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:528
Well:14
Vector:pFlc-1
Associated Gene/TranscriptGC-RA
Protein status:RE52814.pep: gold
Preliminary Size:2019
Sequenced Size:2685

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13927 2002-12-10 Blastp of sequenced clone
CG13927 2003-01-01 Sim4 clustering to Release 3
GC 2008-04-29 Release 5.5 accounting
GC 2008-08-15 Release 5.9 accounting
GC 2008-12-18 5.12 accounting

Clone Sequence Records

RE52814.complete Sequence

2685 bp (2685 high quality bases) assembled on 2002-12-10

GenBank Submission: BT003197

> RE52814.complete
AGTTGGCGGACCGTGTTGCTCGCGATTCCCTTTTCCCAGTCGCTGCGTCC
GCAGGTGAGAGTTCATCCGGGAAACGGCCAACTGTTGCCAGTTGCACTCG
GCGGGTGGCGCGCTGCAGGGAGCAGTATAACGGCCCCAATTACTGCCCCA
ACTGCAGCAAATTACGGGTGTGAATTTGATTAATTGCCTTGAAAAGCGAT
TGTGAGCAGAGCAGAAGTGACTGTAAGCCGGGGATTTGATATAACGACTT
GTATGTAAAGTTGACCCCATTTCCGCTTTAATTGGCCATAACAACACAAA
ATTCAAGATTCAGCAGAATGGCCAACTCCAAGCGAAAGCTGCCCACGAAA
CCCAGTGCCACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTC
GGAAGAATTCCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCC
TTCCTCAAAACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAAC
TTCACTAGCCTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGG
AGCTGCCCTGGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTG
ACATCGCAGAGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAG
CCGCTACACTGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTA
TCCACTGATGGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCA
TCATGCTGGGCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCC
TACTGGTACATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTA
TCTATTCGGCCTGGTGGGAACATTGCTGCTCTTCACCCAAGCGGAGTCCT
ACTGCTCCCTGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCC
TACTGGAACTACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTA
CGCAGGTCTGAAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGT
CCAATCTGAGTTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGAT
CCGGAGCTGATAGACCTGCTCATCGTGCATTGGTTCACCGCCTTCTTCGA
CGTGTCCATTGCTTTTTTCATGACTCTGGAAAAGACGCGCCTACTGGTCA
CTCCTTTCATGCTCAGTTTTCATCTAATGAACTCCCGACTGTTTGTAATA
GGCATGTTTCCCTGGGTGTGTCTGGCCGAAGTGCCGCTCTTCTTCAGCTT
CGACTGGCCGAGGAGGCTAGGCAACTGGTCCAAAATACAGGACGTCCATC
CAAAAGATCCAGAGGAAGAGCTTTCCAAGCCGGGAATCCTGGCCAGACTG
CGCACGGGCCTCATCCTTGCCTACTGTGGACTGCAACTCTTCCTGCCATA
CTCACACTTCATCACCAAGGGCTATAACAACTGGACGAATGGGCTGTACG
GCTACTCATGGGACATGATGGTGCACTCCTACGACACGCTGCAGACCTCC
ATTCAGGTGGTGGACAACGAGAGCCGCCAAGTGCACAACCTGAATCCATA
CGCCTTTACGGAGTACGACCGCTGGACGAAGTACGCCGACATGGCAGTGC
AGTATGCCAGGTGCATCGAGGAGAATTTACAAGAGAAACAGCCACATATT
GGGAGGAACATTTCCATCTACTTCGACATCTGGTGCTCCATGAACGGACG
CTTTCAGCAACGATCATTCGATCCACGCGAGGATCTCCTCCGGGCCAAGT
GGTCGCCCTTTGAGAGCACCTCCTGGTCGCTGCCTCTGCTGAACGAGCTG
AACCACATGCGGCCCAAATTGCGCACCATTGAGACTGAGGTGCTGGCCTG
GAACAACTACTCCGATGTCATTTTCGTGGCGGATTTCCCGGGACTAACTC
TGACCAACTTCATCTCGCCGGACCTTATCAACTGCACGCTGACCATTCTT
GAGGGAAATGTTCGGTACCGGAACGAGCGGGATCCGGAGGCCTATTTCCT
GACAGCCGGCAAGAGCATCGGTCTGGAGAGCAACATCACCCACTTGGTCA
CCACCATTGGCCAGAAGCCAGCTTCGTATCTGTTCACATACACCAACAAA
ACGATGCTGGAGCAGGGCATCACGATAGAACAGCCTGATACCGAGGAGCG
GTCTGTCCTGCCGCTGTGGCAGGAGTTCCAGCATCGGGTTACCAACTACC
AGCAGTTTTTGGGCCACATTGGCAACTGCCTAATGTACTTGCTCTACGAT
GTGCCCATTCCGCAGGCCGTAAAGGGGGGAGATTGAAGGAGAAGGCTAAC
CATCAGCACTATTTCGGTTTTAGCCGTATCTAGATTCGATATTAAATCTG
GTTAAGCAAATTCAAAACCTATATTGCCTATAAATCAGAGGATAACAATT
TATATTGAAGAAATGAAGGTCCGATTTGAAGGATATACACAAATCCTCTT
GGTTTTGTCTATATATCAATGAAATGCATTTAATAATATCACATTATTTT
GCATTTACATAACGATACGCTCAAATCAATTAAATCTCGAAACAAAACCT
TGGAAACCAGAGCGATATAACCGAATGTATGGGTGATAAAACTGATAATA
AATGTTCCATATTGTACCACAAAAAAAAAAAAAAA

RE52814.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:30:10
Subject Length Description Subject Range Query Range Score Percent Strand
GC-RA 2670 GC-RA 1..2670 1..2670 13335 99.9 Plus
GC-RB 2425 GC-RB 56..2425 301..2670 11835 99.9 Plus
ABCB7-RC 3027 ABCB7-RC 2792..3027 2671..2436 1180 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:18:38
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 1622764..1624184 2670..1250 7090 99.9 Minus
chr3L 24539361 chr3L 1624660..1625263 904..301 3020 100 Minus
chr3L 24539361 chr3L 1624254..1624602 1252..904 1745 100 Minus
chr3L 24539361 chr3L 1628603..1628902 300..1 1440 98.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:50 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1623178..1624599 2671..1250 7095 99.9 Minus
3L 28110227 3L 1625075..1625678 904..301 3020 100 Minus
3L 28110227 3L 1624669..1625017 1252..904 1745 100 Minus
3L 28110227 3L 1628999..1629298 300..1 1500 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:06:19
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 1623178..1624599 2671..1250 7095 99.9 Minus
3L 28103327 3L 1625075..1625678 904..301 3020 100 Minus
3L 28103327 3L 1624669..1625017 1252..904 1745 100 Minus
3L 28103327 3L 1628999..1629298 300..1 1500 100 Minus
Blast to na_te.dros performed on 2019-03-16 02:18:36 has no hits.

RE52814.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:19:38 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 1622764..1624182 1252..2670 99 <- Minus
chr3L 1624255..1624601 905..1251 100 <- Minus
chr3L 1624660..1625263 301..904 100 <- Minus
chr3L 1628603..1628902 1..300 98   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:12 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2019 318..2336 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:01:09 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RB 1..2019 318..2336 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:15 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2019 318..2336 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:51:36 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2019 318..2336 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:04:45 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2019 318..2336 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:18:44 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2670 1..2670 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:01:09 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2670 1..2670 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:15 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 4..2673 1..2670 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:51:36 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 1..2670 1..2670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:04:45 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
GC-RA 4..2673 1..2670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:38 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1623179..1624597 1252..2670 99 <- Minus
3L 1624670..1625016 905..1251 100 <- Minus
3L 1625075..1625678 301..904 100 <- Minus
3L 1628999..1629298 1..300 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:38 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1623179..1624597 1252..2670 99 <- Minus
3L 1624670..1625016 905..1251 100 <- Minus
3L 1625075..1625678 301..904 100 <- Minus
3L 1628999..1629298 1..300 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:38 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1623179..1624597 1252..2670 99 <- Minus
3L 1624670..1625016 905..1251 100 <- Minus
3L 1625075..1625678 301..904 100 <- Minus
3L 1628999..1629298 1..300 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:15 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1624670..1625016 905..1251 100 <- Minus
arm_3L 1623179..1624597 1252..2670 99 <- Minus
arm_3L 1625075..1625678 301..904 100 <- Minus
arm_3L 1628999..1629298 1..300 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:23:30 Download gff for RE52814.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1623179..1624597 1252..2670 99 <- Minus
3L 1624670..1625016 905..1251 100 <- Minus
3L 1625075..1625678 301..904 100 <- Minus
3L 1628999..1629298 1..300 100   Minus

RE52814.hyp Sequence

Translation from 317 to 2335

> RE52814.hyp
MANSKRKLPTKPSATEDATPHKDTPRSSEEFPTDVNHKSAKKSFLPQNAF
FRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEER
GGGQLDVRFQEPLHCHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYR
FRTSCLAFLIPYWYIFLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDR
WLNPRKSHCIPYWNYFLIKFQFFILYMYAGLKKFSLEWLSGYAMSNLSYH
WVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLVTPFMLS
FHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNWSKIQDVHPKDPEE
ELSKPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDM
MVHSYDTLQTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI
EENLQEKQPHIGRNISIYFDIWCSMNGRFQQRSFDPREDLLRAKWSPFES
TSWSLPLLNELNHMRPKLRTIETEVLAWNNYSDVIFVADFPGLTLTNFIS
PDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIGQK
PASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTNYQQFLGH
IGNCLMYLLYDVPIPQAVKGGD*

RE52814.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:21:37
Subject Length Description Subject Range Query Range Score Percent Strand
GC-PB 672 CG13927-PB 1..672 1..672 3666 100 Plus
GC-PA 672 CG13927-PA 1..672 1..672 3666 100 Plus

RE52814.pep Sequence

Translation from 317 to 2335

> RE52814.pep
MANSKRKLPTKPSATEDATPHKDTPRSSEEFPTDVNHKSAKKSFLPQNAF
FRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEER
GGGQLDVRFQEPLHCHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYR
FRTSCLAFLIPYWYIFLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDR
WLNPRKSHCIPYWNYFLIKFQFFILYMYAGLKKFSLEWLSGYAMSNLSYH
WVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLVTPFMLS
FHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNWSKIQDVHPKDPEE
ELSKPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDM
MVHSYDTLQTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI
EENLQEKQPHIGRNISIYFDIWCSMNGRFQQRSFDPREDLLRAKWSPFES
TSWSLPLLNELNHMRPKLRTIETEVLAWNNYSDVIFVADFPGLTLTNFIS
PDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIGQK
PASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTNYQQFLGH
IGNCLMYLLYDVPIPQAVKGGD*

RE52814.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 05:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24021-PA 671 GF24021-PA 1..671 1..672 2987 83 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 05:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG14584-PA 667 GG14584-PA 1..667 1..672 3301 92 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 05:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH14871-PA 680 GH14871-PA 1..680 1..672 2604 70.2 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:46:34
Subject Length Description Subject Range Query Range Score Percent Strand
GC-PB 672 CG13927-PB 1..672 1..672 3666 100 Plus
GC-PA 672 CG13927-PA 1..672 1..672 3666 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 05:57:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI12843-PA 683 GI12843-PA 1..683 1..672 2675 73.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 05:57:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20734-PA 675 GL20734-PA 1..675 1..672 2900 79.9 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 05:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA12632-PA 677 GA12632-PA 1..677 1..672 2892 78.8 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 05:57:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM14197-PA 672 GM14197-PA 1..672 1..672 3455 95.1 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 05:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD13462-PA 672 GD13462-PA 1..672 1..672 3446 95.1 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 05:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12988-PA 681 GJ12988-PA 1..681 1..672 2661 73.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 05:57:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23671-PA 697 GK23671-PA 1..694 1..669 2554 71.9 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 05:57:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20943-PA 669 GE20943-PA 1..669 1..672 3351 92.7 Plus