BDGP Sequence Production Resources |
Search the DGRC for RE52814
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 528 |
Well: | 14 |
Vector: | pFlc-1 |
Associated Gene/Transcript | GC-RA |
Protein status: | RE52814.pep: gold |
Preliminary Size: | 2019 |
Sequenced Size: | 2685 |
Gene | Date | Evidence |
---|---|---|
CG13927 | 2002-12-10 | Blastp of sequenced clone |
CG13927 | 2003-01-01 | Sim4 clustering to Release 3 |
GC | 2008-04-29 | Release 5.5 accounting |
GC | 2008-08-15 | Release 5.9 accounting |
GC | 2008-12-18 | 5.12 accounting |
2685 bp (2685 high quality bases) assembled on 2002-12-10
GenBank Submission: BT003197
> RE52814.complete AGTTGGCGGACCGTGTTGCTCGCGATTCCCTTTTCCCAGTCGCTGCGTCC GCAGGTGAGAGTTCATCCGGGAAACGGCCAACTGTTGCCAGTTGCACTCG GCGGGTGGCGCGCTGCAGGGAGCAGTATAACGGCCCCAATTACTGCCCCA ACTGCAGCAAATTACGGGTGTGAATTTGATTAATTGCCTTGAAAAGCGAT TGTGAGCAGAGCAGAAGTGACTGTAAGCCGGGGATTTGATATAACGACTT GTATGTAAAGTTGACCCCATTTCCGCTTTAATTGGCCATAACAACACAAA ATTCAAGATTCAGCAGAATGGCCAACTCCAAGCGAAAGCTGCCCACGAAA CCCAGTGCCACAGAGGACGCTACTCCGCACAAAGATACACCTAGGTCGTC GGAAGAATTCCCCACAGATGTAAATCACAAGAGTGCCAAGAAGTCCTTCC TTCCTCAAAACGCATTCTTTCGAGATTGCCTCGGTCACGATCTGAGCAAC TTCACTAGCCTGACCAACTTTACCAGCTGGCTAAACAGACCCGTAGATGG AGCTGCCCTGGGCATCTTCCGTCTGCTCTACGGAGCAGCCATGCTGATTG ACATCGCAGAGGAGCGAGGTGGCGGCCAGCTGGACGTGCGGTTTCAGGAG CCGCTACACTGCCACTTTCCACTGTTCAACGGGATGCGAGCATTGGACTA TCCACTGATGGGCTGCGTCTATCTGTGCATGTGGCTGGGCGCGTGGGGCA TCATGCTGGGCTATCGATTCAGGACTAGCTGCCTGGCCTTCCTGATACCC TACTGGTACATCTTCCTGCTGGACAAACCGACGTGGAATAACCACAGCTA TCTATTCGGCCTGGTGGGAACATTGCTGCTCTTCACCCAAGCGGAGTCCT ACTGCTCCCTGGACAGATGGCTAAATCCCCGAAAGAGTCACTGTATTCCC TACTGGAACTACTTCCTAATCAAATTCCAGTTCTTCATCCTGTACATGTA CGCAGGTCTGAAGAAATTCTCGCTGGAATGGCTATCGGGATACGCGATGT CCAATCTGAGTTACCACTGGGTCTTTGCCCCGTTCCGGCAAGTGATTGAT CCGGAGCTGATAGACCTGCTCATCGTGCATTGGTTCACCGCCTTCTTCGA CGTGTCCATTGCTTTTTTCATGACTCTGGAAAAGACGCGCCTACTGGTCA CTCCTTTCATGCTCAGTTTTCATCTAATGAACTCCCGACTGTTTGTAATA GGCATGTTTCCCTGGGTGTGTCTGGCCGAAGTGCCGCTCTTCTTCAGCTT CGACTGGCCGAGGAGGCTAGGCAACTGGTCCAAAATACAGGACGTCCATC CAAAAGATCCAGAGGAAGAGCTTTCCAAGCCGGGAATCCTGGCCAGACTG CGCACGGGCCTCATCCTTGCCTACTGTGGACTGCAACTCTTCCTGCCATA CTCACACTTCATCACCAAGGGCTATAACAACTGGACGAATGGGCTGTACG GCTACTCATGGGACATGATGGTGCACTCCTACGACACGCTGCAGACCTCC ATTCAGGTGGTGGACAACGAGAGCCGCCAAGTGCACAACCTGAATCCATA CGCCTTTACGGAGTACGACCGCTGGACGAAGTACGCCGACATGGCAGTGC AGTATGCCAGGTGCATCGAGGAGAATTTACAAGAGAAACAGCCACATATT GGGAGGAACATTTCCATCTACTTCGACATCTGGTGCTCCATGAACGGACG CTTTCAGCAACGATCATTCGATCCACGCGAGGATCTCCTCCGGGCCAAGT GGTCGCCCTTTGAGAGCACCTCCTGGTCGCTGCCTCTGCTGAACGAGCTG AACCACATGCGGCCCAAATTGCGCACCATTGAGACTGAGGTGCTGGCCTG GAACAACTACTCCGATGTCATTTTCGTGGCGGATTTCCCGGGACTAACTC TGACCAACTTCATCTCGCCGGACCTTATCAACTGCACGCTGACCATTCTT GAGGGAAATGTTCGGTACCGGAACGAGCGGGATCCGGAGGCCTATTTCCT GACAGCCGGCAAGAGCATCGGTCTGGAGAGCAACATCACCCACTTGGTCA CCACCATTGGCCAGAAGCCAGCTTCGTATCTGTTCACATACACCAACAAA ACGATGCTGGAGCAGGGCATCACGATAGAACAGCCTGATACCGAGGAGCG GTCTGTCCTGCCGCTGTGGCAGGAGTTCCAGCATCGGGTTACCAACTACC AGCAGTTTTTGGGCCACATTGGCAACTGCCTAATGTACTTGCTCTACGAT GTGCCCATTCCGCAGGCCGTAAAGGGGGGAGATTGAAGGAGAAGGCTAAC CATCAGCACTATTTCGGTTTTAGCCGTATCTAGATTCGATATTAAATCTG GTTAAGCAAATTCAAAACCTATATTGCCTATAAATCAGAGGATAACAATT TATATTGAAGAAATGAAGGTCCGATTTGAAGGATATACACAAATCCTCTT GGTTTTGTCTATATATCAATGAAATGCATTTAATAATATCACATTATTTT GCATTTACATAACGATACGCTCAAATCAATTAAATCTCGAAACAAAACCT TGGAAACCAGAGCGATATAACCGAATGTATGGGTGATAAAACTGATAATA AATGTTCCATATTGTACCACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 1622764..1624184 | 2670..1250 | 7090 | 99.9 | Minus |
chr3L | 24539361 | chr3L | 1624660..1625263 | 904..301 | 3020 | 100 | Minus |
chr3L | 24539361 | chr3L | 1624254..1624602 | 1252..904 | 1745 | 100 | Minus |
chr3L | 24539361 | chr3L | 1628603..1628902 | 300..1 | 1440 | 98.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 1623178..1624599 | 2671..1250 | 7095 | 99.9 | Minus |
3L | 28110227 | 3L | 1625075..1625678 | 904..301 | 3020 | 100 | Minus |
3L | 28110227 | 3L | 1624669..1625017 | 1252..904 | 1745 | 100 | Minus |
3L | 28110227 | 3L | 1628999..1629298 | 300..1 | 1500 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 1623178..1624599 | 2671..1250 | 7095 | 99.9 | Minus |
3L | 28103327 | 3L | 1625075..1625678 | 904..301 | 3020 | 100 | Minus |
3L | 28103327 | 3L | 1624669..1625017 | 1252..904 | 1745 | 100 | Minus |
3L | 28103327 | 3L | 1628999..1629298 | 300..1 | 1500 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 1622764..1624182 | 1252..2670 | 99 | <- | Minus |
chr3L | 1624255..1624601 | 905..1251 | 100 | <- | Minus |
chr3L | 1624660..1625263 | 301..904 | 100 | <- | Minus |
chr3L | 1628603..1628902 | 1..300 | 98 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2019 | 318..2336 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RB | 1..2019 | 318..2336 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2019 | 318..2336 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2019 | 318..2336 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2019 | 318..2336 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2670 | 1..2670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2670 | 1..2670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 4..2673 | 1..2670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 1..2670 | 1..2670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
GC-RA | 4..2673 | 1..2670 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1623179..1624597 | 1252..2670 | 99 | <- | Minus |
3L | 1624670..1625016 | 905..1251 | 100 | <- | Minus |
3L | 1625075..1625678 | 301..904 | 100 | <- | Minus |
3L | 1628999..1629298 | 1..300 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1623179..1624597 | 1252..2670 | 99 | <- | Minus |
3L | 1624670..1625016 | 905..1251 | 100 | <- | Minus |
3L | 1625075..1625678 | 301..904 | 100 | <- | Minus |
3L | 1628999..1629298 | 1..300 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1623179..1624597 | 1252..2670 | 99 | <- | Minus |
3L | 1624670..1625016 | 905..1251 | 100 | <- | Minus |
3L | 1625075..1625678 | 301..904 | 100 | <- | Minus |
3L | 1628999..1629298 | 1..300 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 1624670..1625016 | 905..1251 | 100 | <- | Minus |
arm_3L | 1623179..1624597 | 1252..2670 | 99 | <- | Minus |
arm_3L | 1625075..1625678 | 301..904 | 100 | <- | Minus |
arm_3L | 1628999..1629298 | 1..300 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 1623179..1624597 | 1252..2670 | 99 | <- | Minus |
3L | 1624670..1625016 | 905..1251 | 100 | <- | Minus |
3L | 1625075..1625678 | 301..904 | 100 | <- | Minus |
3L | 1628999..1629298 | 1..300 | 100 | Minus |
Translation from 317 to 2335
> RE52814.hyp MANSKRKLPTKPSATEDATPHKDTPRSSEEFPTDVNHKSAKKSFLPQNAF FRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEER GGGQLDVRFQEPLHCHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYR FRTSCLAFLIPYWYIFLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDR WLNPRKSHCIPYWNYFLIKFQFFILYMYAGLKKFSLEWLSGYAMSNLSYH WVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLVTPFMLS FHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNWSKIQDVHPKDPEE ELSKPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDM MVHSYDTLQTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI EENLQEKQPHIGRNISIYFDIWCSMNGRFQQRSFDPREDLLRAKWSPFES TSWSLPLLNELNHMRPKLRTIETEVLAWNNYSDVIFVADFPGLTLTNFIS PDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIGQK PASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTNYQQFLGH IGNCLMYLLYDVPIPQAVKGGD*
Translation from 317 to 2335
> RE52814.pep MANSKRKLPTKPSATEDATPHKDTPRSSEEFPTDVNHKSAKKSFLPQNAF FRDCLGHDLSNFTSLTNFTSWLNRPVDGAALGIFRLLYGAAMLIDIAEER GGGQLDVRFQEPLHCHFPLFNGMRALDYPLMGCVYLCMWLGAWGIMLGYR FRTSCLAFLIPYWYIFLLDKPTWNNHSYLFGLVGTLLLFTQAESYCSLDR WLNPRKSHCIPYWNYFLIKFQFFILYMYAGLKKFSLEWLSGYAMSNLSYH WVFAPFRQVIDPELIDLLIVHWFTAFFDVSIAFFMTLEKTRLLVTPFMLS FHLMNSRLFVIGMFPWVCLAEVPLFFSFDWPRRLGNWSKIQDVHPKDPEE ELSKPGILARLRTGLILAYCGLQLFLPYSHFITKGYNNWTNGLYGYSWDM MVHSYDTLQTSIQVVDNESRQVHNLNPYAFTEYDRWTKYADMAVQYARCI EENLQEKQPHIGRNISIYFDIWCSMNGRFQQRSFDPREDLLRAKWSPFES TSWSLPLLNELNHMRPKLRTIETEVLAWNNYSDVIFVADFPGLTLTNFIS PDLINCTLTILEGNVRYRNERDPEAYFLTAGKSIGLESNITHLVTTIGQK PASYLFTYTNKTMLEQGITIEQPDTEERSVLPLWQEFQHRVTNYQQFLGH IGNCLMYLLYDVPIPQAVKGGD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24021-PA | 671 | GF24021-PA | 1..671 | 1..672 | 2987 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14584-PA | 667 | GG14584-PA | 1..667 | 1..672 | 3301 | 92 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14871-PA | 680 | GH14871-PA | 1..680 | 1..672 | 2604 | 70.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
GC-PB | 672 | CG13927-PB | 1..672 | 1..672 | 3666 | 100 | Plus |
GC-PA | 672 | CG13927-PA | 1..672 | 1..672 | 3666 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12843-PA | 683 | GI12843-PA | 1..683 | 1..672 | 2675 | 73.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20734-PA | 675 | GL20734-PA | 1..675 | 1..672 | 2900 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA12632-PA | 677 | GA12632-PA | 1..677 | 1..672 | 2892 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14197-PA | 672 | GM14197-PA | 1..672 | 1..672 | 3455 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13462-PA | 672 | GD13462-PA | 1..672 | 1..672 | 3446 | 95.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ12988-PA | 681 | GJ12988-PA | 1..681 | 1..672 | 2661 | 73.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23671-PA | 697 | GK23671-PA | 1..694 | 1..669 | 2554 | 71.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20943-PA | 669 | GE20943-PA | 1..669 | 1..672 | 3351 | 92.7 | Plus |