BDGP Sequence Production Resources |
Search the DGRC for RE52822
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 528 |
Well: | 22 |
Vector: | pFlc-1 |
Associated Gene/Transcript | vlc-RB |
Protein status: | RE52822.pep: gold |
Sequenced Size: | 2379 |
Gene | Date | Evidence |
---|---|---|
vlc-RD | 2009-06-22 | Replacement based on scoring |
2379 bp assembled on 2009-10-16
GenBank Submission: BT100113.1
> RE52822.complete ATGGCGTTTTTAATGTCCAGGTCATGGCAACACAACCGCTGTTCACCGAT CAGTTTTTATTGGTTTTCAGGAATAAGTAAATTGGATTATTGAAGGCTTC ACTTGGCTCAGTTTTCATGGATCGCAGTCTGGACTCTATTGGCAGCTGTT CACTGGATGTAGACGCCGACTCCTCCGATATATCAGATACCAGTGGGAGC CTGAACTTTCCAACGCCGGTCTCAGTAAGGGACATAACACGCGAATTTAC TGCCAACCTTCGGGAGCGCTGTGTGCCTAACTTGCCTCCCCAGCCTCAGC ACAAAACCCCTGCCTACGTTGAATCCAGGTCGTCAGAGCTGGAGCACATG GTGCTGTCACCTGCAATTGTGGAGTGCGACCAAGAGCCGAGCTCCAATGA TTTTGACGAGACTTCTGCAGAAAATTCACAAGAAGCTCCCGAAAAGAAGC CCAGCTATTTAAACCTGGCTTGCTGCGTCAACGGTTATTCCAACCTTACC ACCTACGACTCCAAGATTCGGCAGGACATAAACAAGTCACCGACACCAAC TCTGCACAGCATGCCTTCTCCGGCCACCAAGTGCAAACCCATCGAGCCTA ACAACAACAGCAACGACAGTAGCGGGAATTTTAGTTCGGGTTCTGGTCAC AGCAATGGAAATGGCAGTTTTATCAAGCAACGGGTGGAGCGACTTTACGG GCCGGGTGCATTAGCCCAGGGTTTCTACAGCCCCAAAAAGCACGGCCAGT CACCATCGAATGCTGCAGGGCGATCGGAAAGGGGGCAGGTGGAGATCGAC TCTCTACAAGGCTCCGAACTGGCTCGGAAATTCAAGCAGCTCTCCCCCAG TAAAGACTATGGGGAGTTTCGAAAAAAAATGCAGAAGAAGTGTTCTCAGA GTACAACGGCGAGGATAGACGAGCCGTTGCATTCTCCAGGGCTTAACGGA GATCTTGACCTGCCCGTGTTTAGGCACCTTAGTCAAGAGTTCCGCGCCCA GTTGCCTACTGTGTCACCAAAAAGGGGTGCTCCTCGATCTTGCATGGCTC CTGATGTACTGCTTGTAGATAACGAGTCAAGTCCAGACCATGGTCCCACA GATGAAGTAGACCACGAATCCACAAAAATGGACAAACTAGCCTCAGAGGA ATACATCAGCACTTCCAATATTTCTGTTGAAGCTGTTGTTAAGGATGGAA ATTTCTTTCTGAAAATACTAAAAGAGGAACAAAGCCGTCTCTTGGTGCTA GCCGCTCTTGCTGAAAAATATGCAGACGCCTTGTCTACAAATCCAGATAT CTCCGAAGATACCTTTGGGCTACTGCGATCAGCGTCGGGTAAGGCCCGTC TCTTGGTATCGCAGAAAATGAAACAATTCGAGGGTCTTTGCCACAATAAT CTGAATCGCTCACCAGAGGATAAGTTTCCAACAACTCTGGATGATTTACA AGGATTCTGGGATATGGTTTATTTGCAGGTGGAGCACGTGGATTCTATTT TTGCTGATATAGAGAAACTCAAAAGTAACGACTGGAAGGTAAAAGCACAG TCCGTCGCTGACCAACCCGATTTGCACACCATACCAACTAAGACAATAAA GCCGTCAAAAGTCGGTGTTTCGCAAGTGAAAACAGTCGGAAAGGCATCCA GCGTTCGTGTGAATGGCTCGGCACCTCCCCCACCTAACTCGGCAGCAGCT TTAAAGAGGGAGGCCCAGAGAAAACTGCTTCTAGAGATGAAACGTCAGCG TCGCGAGGCTATGACCGCAGCGGCCAAATTGAATCCCATAAATGTTGATG CCGACCCGGACGTGCCGGGAATAATTGGCGATAGTTGTGCTAATCCTAGC GTTAGCAACGGAAGTTAAATAATGCTCACTGCGAATAGCAACTCATGCTT TCTATTTATACATATATTTTTAACTAACACACGTGTACCCCACAAAGGCA TACTTAAATTTATAGATATTTCTAGTTGAATTAATCATTTACTAGTCCCA ACTAAAATTATTGTGTTGGAGCTCCTCACTGAAATCTGTCACAAGGCGTC AAATATCTAGGAGATAACGAAGTATTGTCACCAATTGCGACTTACCTAAA GTTGTTCATAAATATTGCCTTATCCGCGAAAGATTTCGCTAATTAATCAA TTTGCTGTGCACATTATGTAATTGAAAATTAAAATTACTTGATTACATAT AAAAAAGACATTTATTCACGTTTTACATTATTTAAGTATTTTAAAAACCA ACAAAATTTTTGTATAACATAATTTGATGTTTTATAATTATTTTTGAGAA ATTTAACTTATACAACTCTTGGAATATCATTTCTATTAATAGGCAAAATA TTTTTATACAACTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc.h | 2470 | vlc.h | 188..2456 | 106..2374 | 11315 | 99.9 | Plus |
vlc-RA | 2538 | vlc-RA | 691..2524 | 541..2374 | 9140 | 99.8 | Plus |
vlc-RE | 2631 | vlc-RE | 784..2617 | 541..2374 | 9140 | 99.8 | Plus |
vlc-RA | 2538 | vlc-RA | 190..624 | 106..540 | 2175 | 100 | Plus |
vlc-RE | 2631 | vlc-RE | 283..717 | 106..540 | 2175 | 100 | Plus |
vlc.h | 2470 | vlc.h | 6..112 | 1..107 | 535 | 100 | Plus |
vlc-RA | 2538 | vlc-RA | 8..114 | 1..107 | 535 | 100 | Plus |
vlc-RE | 2631 | vlc-RE | 6..112 | 1..107 | 535 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 1591807..1592788 | 1383..2364 | 4895 | 99.9 | Plus |
chr2R | 21145070 | chr2R | 1590844..1591589 | 541..1286 | 3730 | 100 | Plus |
chr2R | 21145070 | chr2R | 1590421..1590777 | 184..540 | 1785 | 100 | Plus |
chr2R | 21145070 | chr2R | 1589485..1589591 | 1..107 | 535 | 100 | Plus |
chr2R | 21145070 | chr2R | 1591659..1591757 | 1287..1385 | 495 | 100 | Plus |
chr2R | 21145070 | chr2R | 1590239..1590320 | 105..186 | 410 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 5704434..5705425 | 1383..2374 | 4930 | 99.8 | Plus |
2R | 25286936 | 2R | 5703471..5704216 | 541..1286 | 3730 | 100 | Plus |
2R | 25286936 | 2R | 5703048..5703404 | 184..540 | 1785 | 100 | Plus |
2R | 25286936 | 2R | 5702112..5702218 | 1..107 | 535 | 100 | Plus |
2R | 25286936 | 2R | 5704286..5704384 | 1287..1385 | 495 | 100 | Plus |
2R | 25286936 | 2R | 5702866..5702947 | 105..186 | 410 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 5705633..5706624 | 1383..2374 | 4930 | 99.7 | Plus |
2R | 25260384 | 2R | 5704670..5705415 | 541..1286 | 3730 | 100 | Plus |
2R | 25260384 | 2R | 5704247..5704603 | 184..540 | 1785 | 100 | Plus |
2R | 25260384 | 2R | 5703311..5703417 | 1..107 | 535 | 100 | Plus |
2R | 25260384 | 2R | 5705485..5705583 | 1287..1385 | 495 | 100 | Plus |
2R | 25260384 | 2R | 5704065..5704146 | 105..186 | 410 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 3831..3967 | 2161..2300 | 143 | 57.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5601..5673 | 551..623 | 122 | 63 | Plus |
HeT-A | 6083 | HeT-A DM06920 6083bp Derived from U06920.2 (Rel. 67, Last updated, Version 14). | 303..403 | 2265..2167 | 122 | 59.4 | Minus |
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 1854..1960 | 1259..1153 | 120 | 60.6 | Minus |
mdg1 | 7480 | mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). | 1289..1338 | 2295..2245 | 117 | 72.5 | Minus |
Tabor | 7345 | Tabor TABOR 7345bp | 6718..6823 | 2173..2275 | 116 | 60.4 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 1589485..1589593 | 1..111 | 97 | -> | Plus |
chr2R | 1590246..1590320 | 112..186 | 100 | -> | Plus |
chr2R | 1591808..1592788 | 1384..2364 | 99 | Plus | |
chr2R | 1590424..1590777 | 187..540 | 100 | -> | Plus |
chr2R | 1590844..1591589 | 541..1286 | 100 | -> | Plus |
chr2R | 1591659..1591755 | 1287..1383 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..1752 | 117..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..1752 | 117..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..1752 | 117..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..1752 | 117..1868 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 6..2367 | 1..2364 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 6..2369 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..2364 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
vlc-RB | 1..2364 | 1..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702112..5702220 | 1..111 | 97 | -> | Plus |
2R | 5702873..5702947 | 112..186 | 100 | -> | Plus |
2R | 5703051..5703404 | 187..540 | 100 | -> | Plus |
2R | 5703471..5704216 | 541..1286 | 100 | -> | Plus |
2R | 5704286..5704382 | 1287..1383 | 100 | -> | Plus |
2R | 5704435..5705415 | 1384..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702112..5702220 | 1..111 | 97 | -> | Plus |
2R | 5702873..5702947 | 112..186 | 100 | -> | Plus |
2R | 5703051..5703404 | 187..540 | 100 | -> | Plus |
2R | 5703471..5704216 | 541..1286 | 100 | -> | Plus |
2R | 5704286..5704382 | 1287..1383 | 100 | -> | Plus |
2R | 5704435..5705415 | 1384..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5702112..5702220 | 1..111 | 97 | -> | Plus |
2R | 5702873..5702947 | 112..186 | 100 | -> | Plus |
2R | 5703051..5703404 | 187..540 | 100 | -> | Plus |
2R | 5703471..5704216 | 541..1286 | 100 | -> | Plus |
2R | 5704286..5704382 | 1287..1383 | 100 | -> | Plus |
2R | 5704435..5705415 | 1384..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 1589617..1589725 | 1..111 | 97 | -> | Plus |
arm_2R | 1590378..1590452 | 112..186 | 100 | -> | Plus |
arm_2R | 1590556..1590909 | 187..540 | 100 | -> | Plus |
arm_2R | 1590976..1591721 | 541..1286 | 100 | -> | Plus |
arm_2R | 1591791..1591887 | 1287..1383 | 100 | -> | Plus |
arm_2R | 1591940..1592920 | 1384..2364 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 5704250..5704603 | 187..540 | 100 | -> | Plus |
2R | 5704670..5705415 | 541..1286 | 100 | -> | Plus |
2R | 5705485..5705581 | 1287..1383 | 100 | -> | Plus |
2R | 5705634..5706614 | 1384..2364 | 100 | Plus | |
2R | 5703311..5703419 | 1..111 | 97 | -> | Plus |
2R | 5704072..5704146 | 112..186 | 100 | -> | Plus |
Translation from 116 to 1867
> RE52822.pep MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSPTPTLHSMP SPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVERLYGPGALA QGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGE FRKKMQKKCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQEFRAQLPTVS PKRGAPRSCMAPDVLLVDNESSPDHGPTDEVDHESTKMDKLASEEYISTS NISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADALSTNPDISEDTF GLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDM VYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKTIKPSKVG VSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQRKLLLEMKRQRREAMT AAAKLNPINVDADPDVPGIIGDSCANPSVSNGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11028-PA | 521 | GF11028-PA | 1..516 | 1..476 | 1466 | 62.9 | Plus |
Dana\GF13697-PA | 959 | GF13697-PA | 600..730 | 352..473 | 171 | 33.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23178-PA | 582 | GG23178-PA | 1..582 | 1..583 | 2676 | 88.7 | Plus |
Dere\GG19263-PA | 169 | GG19263-PA | 1..166 | 338..516 | 390 | 50.3 | Plus |
Dere\GG20384-PA | 909 | GG20384-PA | 547..684 | 341..473 | 184 | 34.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21456-PA | 647 | GH21456-PA | 1..636 | 1..582 | 1547 | 53.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc-PB | 583 | CG8390-PB | 1..583 | 1..583 | 3016 | 100 | Plus |
vlc-PI | 605 | CG8390-PI | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PH | 605 | CG8390-PH | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PG | 605 | CG8390-PG | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PF | 605 | CG8390-PF | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PE | 605 | CG8390-PE | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PC | 605 | CG8390-PC | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PA | 605 | CG8390-PA | 1..605 | 1..583 | 2975 | 96.2 | Plus |
mars-PD | 921 | CG17064-PD | 557..704 | 341..484 | 170 | 32.1 | Plus |
mars-PC | 921 | CG17064-PC | 557..704 | 341..484 | 170 | 32.1 | Plus |
mars-PB | 921 | CG17064-PB | 557..704 | 341..484 | 170 | 32.1 | Plus |
mars-PA | 921 | CG17064-PA | 557..704 | 341..484 | 170 | 32.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19933-PA | 628 | GI19933-PA | 1..596 | 1..549 | 1422 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17527-PA | 628 | GL17527-PA | 1..628 | 1..583 | 1616 | 57.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA21040-PB | 597 | GA21040-PB | 1..597 | 1..583 | 1620 | 59.7 | Plus |
Dpse\GA21040-PA | 628 | GA21040-PA | 1..628 | 1..583 | 1616 | 57.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM16518-PA | 586 | GM16518-PA | 1..586 | 1..583 | 2755 | 95.2 | Plus |
Dsec\GM21472-PA | 929 | GM21472-PA | 564..712 | 346..484 | 183 | 34 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD10382-PA | 1053 | GD10382-PA | 469..1053 | 1..583 | 2748 | 95.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\vlc-PA | 632 | GJ15100-PA | 1..611 | 1..554 | 1495 | 53.5 | Plus |
Dvir\GJ19758-PA | 636 | GJ19758-PA | 328..425 | 402..500 | 159 | 37.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\vlc-PA | 624 | GK10764-PA | 1..613 | 1..573 | 1598 | 55.3 | Plus |
Dwil\GK15960-PA | 957 | GK15960-PA | 579..739 | 352..512 | 186 | 33.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20549-PA | 620 | GE20549-PA | 41..620 | 1..583 | 2633 | 87.5 | Plus |
Dyak\GE15882-PA | 124 | GE15882-PA | 11..124 | 361..474 | 389 | 66.7 | Plus |
Dyak\GE12546-PA | 923 | GE12546-PA | 566..708 | 350..484 | 178 | 34 | Plus |
Translation from 116 to 1867
> RE52822.hyp MDRSLDSIGSCSLDVDADSSDISDTSGSLNFPTPVSVRDITREFTANLRE RCVPNLPPQPQHKTPAYVESRSSELEHMVLSPAIVECDQEPSSNDFDETS AENSQEAPEKKPSYLNLACCVNGYSNLTTYDSKIRQDINKSPTPTLHSMP SPATKCKPIEPNNNSNDSSGNFSSGSGHSNGNGSFIKQRVERLYGPGALA QGFYSPKKHGQSPSNAAGRSERGQVEIDSLQGSELARKFKQLSPSKDYGE FRKKMQKKCSQSTTARIDEPLHSPGLNGDLDLPVFRHLSQEFRAQLPTVS PKRGAPRSCMAPDVLLVDNESSPDHGPTDEVDHESTKMDKLASEEYISTS NISVEAVVKDGNFFLKILKEEQSRLLVLAALAEKYADALSTNPDISEDTF GLLRSASGKARLLVSQKMKQFEGLCHNNLNRSPEDKFPTTLDDLQGFWDM VYLQVEHVDSIFADIEKLKSNDWKVKAQSVADQPDLHTIPTKTIKPSKVG VSQVKTVGKASSVRVNGSAPPPPNSAAALKREAQRKLLLEMKRQRREAMT AAAKLNPINVDADPDVPGIIGDSCANPSVSNGS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
vlc-PB | 583 | CG8390-PB | 1..583 | 1..583 | 3016 | 100 | Plus |
vlc-PI | 605 | CG8390-PI | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PH | 605 | CG8390-PH | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PG | 605 | CG8390-PG | 1..605 | 1..583 | 2975 | 96.2 | Plus |
vlc-PF | 605 | CG8390-PF | 1..605 | 1..583 | 2975 | 96.2 | Plus |