BDGP Sequence Production Resources |
Search the DGRC for RE52852
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 528 |
Well: | 52 |
Vector: | pFlc-1 |
Associated Gene/Transcript | RpL28-RA |
Protein status: | RE52852.pep: gold |
Sequenced Size: | 561 |
Gene | Date | Evidence |
---|---|---|
CG12740 | 2001-12-14 | Blastp of sequenced clone |
CG12740 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12740 | 2003-01-01 | Sim4 clustering to Release 3 |
RpL28 | 2008-04-29 | Release 5.5 accounting |
RpL28 | 2008-08-15 | Release 5.9 accounting |
RpL28 | 2008-12-18 | 5.12 accounting |
561 bp (561 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071444
> RE52852.complete CTTTTTTCCTTCTTGTATTTCAACGAGAAAAGACGTGAGATGGCAACCTC TTCGCACCTCAATTGGTTGATCATTCGCAACAACAACGCCTTCTTGTTGA AGAAGCGCGATGTGAAGAAGCCCTTCAGCACAGAGCCAAACAACTTGGCC AGCGTGAGCTCGTACCGCTACAGCGGCATCGTGCACAAGAAGACCCTGGG AGTCGTGCCAGCTGCCGACAAGAAGGGCTTCACCGCCGTGCTGAAGAAGG GCAAGTATGCCCAGCGCCCCGCCAAGAACACCGTGCGTGTTGACTTCAAG GCCGGTCCCCGCCGTTCCCTGAAGAAGCTGAAGAACCTGCTTATCGGCTC CAAGTACCGCAAGGACCTGACACAGGCTGCCCTCCGCCGCGCTTCCGCTG TCCTGCGCTCCCAGAAGCCCGCCCCCGTCAAGGGAAAGAAGGCCGAGTTT GCTAAGGGAAAGAAGCCCGAATAAACTGTACCAGATTGGGGCTATGCGGA GCTGTTTTCTACTCGAGAATAAAGAAAAAATATTAAAAACACCCTAAAAA AAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL28-RF | 827 | RpL28-RF | 110..626 | 31..547 | 2570 | 99.8 | Plus |
RpL28-RB | 973 | RpL28-RB | 170..686 | 31..547 | 2570 | 99.8 | Plus |
RpL28-RC | 1156 | RpL28-RC | 170..515 | 31..376 | 1730 | 100 | Plus |
RpL28-RC | 1156 | RpL28-RC | 696..869 | 374..547 | 855 | 99.4 | Plus |
RpL28-RC | 1156 | RpL28-RC | 5..32 | 5..32 | 140 | 100 | Plus |
RpL28-RF | 827 | RpL28-RF | 5..32 | 5..32 | 140 | 100 | Plus |
RpL28-RB | 973 | RpL28-RB | 5..32 | 5..32 | 140 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 3220870..3221113 | 376..133 | 1220 | 100 | Minus |
chr3L | 24539361 | chr3L | 3220520..3220689 | 543..374 | 820 | 98.8 | Minus |
chr3L | 24539361 | chr3L | 3221285..3221387 | 133..31 | 515 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 3221466..3221709 | 376..133 | 1220 | 100 | Minus |
3L | 28103327 | 3L | 3221112..3221285 | 547..374 | 855 | 99.4 | Minus |
3L | 28103327 | 3L | 3221881..3221983 | 133..31 | 515 | 100 | Minus |
3L | 28103327 | 3L | 3222927..3222954 | 32..5 | 140 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 3220518..3220687 | 376..545 | 98 | <- | Minus |
chr3L | 3220871..3221113 | 133..375 | 100 | <- | Minus |
chr3L | 3221286..3221385 | 33..132 | 100 | <- | Minus |
chr3L | 3222331..3222361 | 1..32 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 40..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 40..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RE | 1..435 | 40..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RD | 1..435 | 40..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RE | 1..435 | 40..474 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RA | 1..545 | 2..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RB | 1..32 | 2..32 | 96 | -> | Plus |
RpL28-RB | 172..684 | 33..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RA | 2..547 | 1..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RA | 1..545 | 2..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
RpL28-RA | 2..547 | 1..545 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3221114..3221283 | 376..545 | 99 | <- | Minus |
3L | 3221467..3221709 | 133..375 | 100 | <- | Minus |
3L | 3221882..3221981 | 33..132 | 100 | <- | Minus |
3L | 3222927..3222957 | 1..32 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3221114..3221283 | 376..545 | 99 | <- | Minus |
3L | 3221467..3221709 | 133..375 | 100 | <- | Minus |
3L | 3221882..3221981 | 33..132 | 100 | <- | Minus |
3L | 3222927..3222957 | 1..32 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3221114..3221283 | 376..545 | 99 | <- | Minus |
3L | 3221467..3221709 | 133..375 | 100 | <- | Minus |
3L | 3221882..3221981 | 33..132 | 100 | <- | Minus |
3L | 3222927..3222957 | 1..32 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 3221114..3221283 | 376..545 | 99 | <- | Minus |
arm_3L | 3221467..3221709 | 133..375 | 100 | <- | Minus |
arm_3L | 3221882..3221981 | 33..132 | 100 | <- | Minus |
arm_3L | 3222927..3222957 | 1..32 | 93 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 3221467..3221709 | 133..375 | 100 | <- | Minus |
3L | 3221882..3221981 | 33..132 | 100 | <- | Minus |
3L | 3222927..3222957 | 1..32 | 93 | Minus | |
3L | 3221114..3221283 | 376..545 | 99 | <- | Minus |
Translation from 3 to 473
> RE52852.hyp LSFLYFNEKRREMATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLAS VSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKA GPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFA KGKKPE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL28-PG | 144 | CG12740-PG | 1..144 | 13..156 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 13..156 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 13..156 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 13..156 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 13..156 | 726 | 100 | Plus |
Translation from 39 to 473
> RE52852.pep MATSSHLNWLIIRNNNAFLLKKRDVKKPFSTEPNNLASVSSYRYSGIVHK KTLGVVPAADKKGFTAVLKKGKYAQRPAKNTVRVDFKAGPRRSLKKLKNL LIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKPE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24379-PA | 144 | GF24379-PA | 1..144 | 1..144 | 718 | 97.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG14270-PA | 144 | GG14270-PA | 1..144 | 1..144 | 727 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH15706-PA | 144 | GH15706-PA | 1..144 | 1..144 | 623 | 83.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
RpL28-PG | 144 | CG12740-PG | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PF | 144 | CG12740-PF | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PE | 144 | CG12740-PE | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PD | 144 | CG12740-PD | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PA | 144 | CG12740-PA | 1..144 | 1..144 | 726 | 100 | Plus |
RpL28-PB | 144 | CG12740-PB | 1..144 | 1..144 | 726 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI12761-PA | 144 | GI12761-PA | 1..144 | 1..144 | 654 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21281-PA | 144 | GL21281-PA | 1..144 | 1..144 | 706 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA11782-PA | 144 | GA11782-PA | 1..144 | 1..144 | 706 | 95.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM14063-PA | 144 | GM14063-PA | 1..144 | 1..144 | 734 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD13338-PA | 144 | GD13338-PA | 1..144 | 1..144 | 728 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15527-PA | 144 | GJ15527-PA | 1..144 | 1..144 | 645 | 88.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK16691-PA | 134 | GK16691-PA | 1..132 | 1..132 | 645 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20698-PA | 144 | GE20698-PA | 1..144 | 1..144 | 727 | 99.3 | Plus |