Clone RE52922 Report

Search the DGRC for RE52922

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:529
Well:22
Vector:pFlc-1
Associated Gene/TranscriptCG15345-RA
Protein status:RE52922.pep: gold
Preliminary Size:623
Sequenced Size:1067

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15345 2002-01-01 Sim4 clustering to Release 2
CG15345 2003-01-01 Sim4 clustering to Release 3
CG15345 2003-01-22 Blastp of sequenced clone
CG15345 2008-04-29 Release 5.5 accounting
CG15345 2008-08-15 Release 5.9 accounting
CG15345 2008-12-18 5.12 accounting

Clone Sequence Records

RE52922.complete Sequence

1067 bp (1067 high quality bases) assembled on 2003-01-22

GenBank Submission: AY089636

> RE52922.complete
ATTTGTTGATTTGCTTTTGGAATATGTTGTAATATTATATTAAAATGACA
AAGTCGAGAATTTGCCGCACTTGCTTGGAAAGTCCGGAAGTCATGGTCAA
TTCATTTGATGTTCCACAAAATTTGGGATATAATATAATATTACCATATA
ATATATATCTTATCCCAGTGCATACAATATCCATTTTATAAAGGGGATTT
CCTACCCGAAACCATTTGTCTGCCGCGCCTAAAGGATGCCAAAAGTGCCT
TTAAGATAATTACAAAATGCAGAAGGAGTCACCAATTTCTCAAGGAATCT
GAAATAAAAGGTTGGTCGGATGAAAGGAAACGTTTGATCCACACTTCCAC
TTAGCCGCTAGCAATGAGCAGCAATTCCAAGTCGAGATGGAGGAGTTTGA
AACTAGTTTATCAATTTGAAAGTAGCAACGATTTCGGAACAGAAAGAGAT
GCAGAAGTCGACACCGGAGAAGGAGAGAATTCAAACCATGAGACTGAAGT
GCATCAGCCAGAGCAAGAGTCCACCGAGGATGAGCGATTCCAATGCCACG
TCAAGAATGAGTCCATCAACGAAGATCTCTCAGAGGAAGAAGATTACAGC
GAACTGAGCACATTAAGACTGGAGGACATTGAAGAGAATGTCCTCGAAGG
TACTCCTCGAATCGTTGAGATGCAGGATGACAGCAAAGTGCAACCAAACC
ACAAATACGTCAATGTAAAAATGTTTATTTTATATACATATAAATAAGGA
AATTAAGGATGTTATCTATGAAGATGTATTTTGATTTGTAAAGATCTATT
TGATAGTATTGTATGAGCTTGTGTTATGATACTAACAAGTGCTAGCAGAA
AAGTGATTTAAAATATTTAAAGAATAAGTGTAACTGCTCATGTCTGCGAT
TATTACTGACTTCTTTCTGTGAAACAAACTCGTAATGATGTATATATTTA
AGTGAACTAATGAAGTAGTTTGTTTTGAACTCGCATCGAAACGACTATTG
TAGCTACTTAACTCTGCTTTTCGAGGAATAAAACTGAGTGAAACTGCTGC
TAAAAAAAAAAAAAAAA

RE52922.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-RA 1173 CG15345-RA 80..1130 1..1051 5255 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:20:57
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 8288895..8289900 1051..47 4815 98.8 Minus
chrX 22417052 chrX 8289957..8290003 47..1 220 97.9 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:01:56 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 8397154..8398162 1051..43 5030 99.9 Minus
X 23542271 X 8398215..8398261 47..1 235 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 8405252..8406260 1051..43 5030 99.9 Minus
X 23527363 X 8406313..8406359 47..1 235 100 Minus
Blast to na_te.dros performed on 2019-03-16 19:20:56 has no hits.

RE52922.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:21:57 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 8288895..8289900 47..1051 98 <- Minus
chrX 8289958..8290003 1..46 97   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:17 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 364..747 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:54:29 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 364..747 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:07 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 364..747 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:45:34 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 364..747 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:27:48 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..384 364..747 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 20:09:28 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:54:29 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:07 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 38..1085 1..1048 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:45:34 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 1..1049 1..1049 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:27:48 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
CG15345-RA 38..1085 1..1048 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:57 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
X 8397154..8398158 47..1051 100 <- Minus
X 8398216..8398261 1..46 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:57 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
X 8397154..8398158 47..1051 100 <- Minus
X 8398216..8398261 1..46 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:57 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
X 8397154..8398158 47..1051 100 <- Minus
X 8398216..8398261 1..46 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:07 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 8291187..8292191 47..1051 100 <- Minus
arm_X 8292249..8292294 1..46 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 14:16:33 Download gff for RE52922.complete
Subject Subject Range Query Range Percent Splice Strand
X 8405252..8406256 47..1051 100 <- Minus
X 8406314..8406359 1..46 100   Minus

RE52922.hyp Sequence

Translation from 363 to 746

> RE52922.hyp
MSSNSKSRWRSLKLVYQFESSNDFGTERDAEVDTGEGENSNHETEVHQPE
QESTEDERFQCHVKNESINEDLSEEEDYSELSTLRLEDIEENVLEGTPRI
VEMQDDSKVQPNHKYVNVKMFILYTYK*

RE52922.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:55:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG15345-PA 127 CG15345-PA 1..127 1..127 663 100 Plus

RE52922.pep Sequence

Translation from 363 to 746

> RE52922.pep
MSSNSKSRWRSLKLVYQFESSNDFGTERDAEVDTGEGENSNHETEVHQPE
QESTEDERFQCHVKNESINEDLSEEEDYSELSTLRLEDIEENVLEGTPRI
VEMQDDSKVQPNHKYVNVKMFILYTYK*

RE52922.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 08:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17969-PA 433 GG17969-PA 127..236 18..115 262 50 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 08:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17460-PA 428 GE17460-PA 126..234 17..115 201 47.7 Plus