BDGP Sequence Production Resources |
Search the DGRC for RE53107
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 531 |
Well: | 7 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG12817-RA |
Protein status: | RE53107.pep: validated full length |
Preliminary Size: | 507 |
Sequenced Size: | 1127 |
Gene | Date | Evidence |
---|---|---|
CG12817 | 2002-01-01 | Sim4 clustering to Release 2 |
CG12817 | 2002-01-03 | Blastp of sequenced clone |
CG12817 | 2003-01-01 | Sim4 clustering to Release 3 |
CG12817 | 2008-04-29 | Release 5.5 accounting |
CG12817 | 2008-08-15 | Release 5.9 accounting |
CG12817 | 2008-12-18 | 5.12 accounting |
1127 bp (1127 high quality bases) assembled on 2002-01-03
GenBank Submission: AY084179
> RE53107.complete GGAAATATACACAAAACCCGAACTCAACACACAACAATTTCCTGCAAAAT TCACTTCACAATGTATAGGATGTGCAATCTATCGAATCTGCTGAATTTCA TCATCTGCATAGCCAGCTTCAGCCAAAACTTCGATGCAACTCTGGCGGTC AAGAGGGGTCCACATCATCCGAGGGGCGAAACCAGGAGGGTGGACCAGCA TCTCACCCATGAGGAGCAGTAAGTGGGGGGCAGTAACGCAAATGTTGTAA AAATTTGAATAATATTTCTATATTTTAGTCGCATTGATGACGATTTGAAG GACATGGGCGTCCAGGCAAATTTAGATGATTTGAGTGAGGAGGAGAAAAT CTTCTATATGTTTAAGGCCCATGACAATGATAATAACAATGCACTGGACG GCCTCGAAATGATTCAGTCTGCCATGCATCATAACTATGACTATTTCAAA AACAACGAGCGGGATGCATACCTACAAAATGCCACCGATGAGCTGGAGCA CTTTATAGAGGCAATTGATAAATTTCTGCTGATTGCCGACGACAATAACG ATGGCCTGCTGCATTACCCGGAATTCGTGAAGGCAATTACCGGTGGCAAG GAGCAGCCGAATGTGGACAGGAATATCCTGCGCTAATCCCTCCAAGATCC CGACTAACAGTACTCAACCAAACAGCCGAAGTAGACACAATAATAGTCAT AGCATAGTTAAATTTTGTAGCAACTAATCTGATTTCCAAGCTGAACCATT TGAGACTGTAATACCGCAAGCAAAAGAAAACCAAGCACTTGACTGCACCC CGTTTGTAATACAACCTAATGATTTAATATACATTTTAATAGATACATAA ATAAGAGTGCATTTTGCTTTGGAATCTTTAAAGCAATCCGTCACAGGTCT GGGTCGTGTTGCAGGCCACTCCTCGGAAGCCATCGTAGGCGGCTCGCTCC ATCAGGACGATGAGGTCGTTGTAGCGCGGCTTCTCCAGCGGCACTCTGTG GATTAGTTAGAACCAGATTAATACTTAATATAACACAGCGATATCTCAAG TTATCACCTGTAATAGTTTTTAACAAATTTTTTTTAATAAAGTTTGCACT TATCAATTAGGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12817-RA | 1111 | CG12817-RA | 3..1111 | 3..1111 | 5530 | 99.9 | Plus |
CG12817.b | 1055 | CG12817.b | 223..1055 | 279..1111 | 4165 | 100 | Plus |
CG12817.a | 1219 | CG12817.a | 611..1219 | 503..1111 | 3030 | 99.8 | Plus |
CG12817.a | 1219 | CG12817.a | 3..508 | 3..508 | 2515 | 99.8 | Plus |
CG12817.b | 1055 | CG12817.b | 3..222 | 3..222 | 1085 | 99.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 6049170..6049778 | 1111..503 | 3030 | 99.8 | Minus |
chr3R | 27901430 | chr3R | 6050079..6050443 | 367..3 | 1810 | 99.7 | Minus |
chr3R | 27901430 | chr3R | 6049880..6050023 | 508..365 | 705 | 99.3 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 10223438..10224048 | 1113..503 | 3040 | 99.8 | Minus |
3R | 32079331 | 3R | 10224350..10224714 | 367..3 | 1810 | 99.7 | Minus |
3R | 32079331 | 3R | 10224151..10224294 | 508..365 | 720 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 9964269..9964879 | 1113..503 | 3040 | 99.8 | Minus |
3R | 31820162 | 3R | 9965181..9965545 | 367..3 | 1810 | 99.7 | Minus |
3R | 31820162 | 3R | 9964982..9965125 | 508..365 | 720 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 6049170..6049772 | 509..1111 | 100 | <- | Minus |
chr3R | 6049880..6050021 | 367..508 | 99 | <- | Minus |
chr3R | 6050080..6050445 | 1..366 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 159..516 | 279..636 | 100 | Plus | |
CG12817-RB | 1..158 | 61..218 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 1..158 | 61..218 | 99 | == | Plus |
CG12817-RB | 159..516 | 279..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 1..158 | 61..218 | 99 | == | Plus |
CG12817-RB | 159..516 | 279..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 1..158 | 61..218 | 99 | == | Plus |
CG12817-RB | 159..516 | 279..636 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 159..516 | 279..636 | 100 | Plus | |
CG12817-RB | 1..158 | 61..218 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RA | 1..1111 | 2..1111 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 1..212 | 7..218 | 99 | == | Plus |
CG12817-RB | 213..785 | 279..851 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 10..227 | 1..218 | 99 | == | Plus |
CG12817-RB | 228..1060 | 279..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RA | 1..1111 | 2..1111 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG12817-RB | 10..227 | 1..218 | 99 | == | Plus |
CG12817-RB | 228..1060 | 279..1111 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10224151..10224292 | 367..508 | 100 | <- | Minus |
3R | 10223440..10224042 | 509..1111 | 100 | <- | Minus |
3R | 10224351..10224716 | 1..366 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10224151..10224292 | 367..508 | 100 | <- | Minus |
3R | 10223440..10224042 | 509..1111 | 100 | <- | Minus |
3R | 10224351..10224716 | 1..366 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 10224151..10224292 | 367..508 | 100 | <- | Minus |
3R | 10223440..10224042 | 509..1111 | 100 | <- | Minus |
3R | 10224351..10224716 | 1..366 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 6049162..6049764 | 509..1111 | 100 | <- | Minus |
arm_3R | 6049873..6050014 | 367..508 | 100 | <- | Minus |
arm_3R | 6050073..6050438 | 1..366 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 9964271..9964873 | 509..1111 | 100 | <- | Minus |
3R | 9964982..9965123 | 367..508 | 100 | <- | Minus |
3R | 9965182..9965547 | 1..366 | 99 | Minus |
Translation from 303 to 635
> RE53107.pep MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE QPNVDRNILR*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17532-PA | 168 | GF17532-PA | 59..168 | 1..110 | 537 | 92.7 | Plus |
Dana\GF18309-PA | 280 | GF18309-PA | 155..248 | 1..92 | 139 | 36.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17293-PA | 171 | GG17293-PA | 62..171 | 1..110 | 563 | 98.2 | Plus |
Dere\GG15114-PA | 280 | GG15114-PA | 156..251 | 1..94 | 152 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH18456-PA | 168 | GH18456-PA | 59..168 | 1..110 | 504 | 84.5 | Plus |
Dgri\GH15949-PA | 278 | GH15949-PA | 157..252 | 1..94 | 152 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG12817-PB | 171 | CG12817-PB | 62..171 | 1..110 | 584 | 100 | Plus |
CG17271-PA | 281 | CG17271-PA | 155..250 | 1..94 | 162 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI24033-PA | 168 | GI24033-PA | 59..168 | 1..110 | 493 | 82.7 | Plus |
Dmoj\GI22155-PA | 259 | GI22155-PA | 141..236 | 1..94 | 152 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23837-PA | 186 | GL23837-PA | 59..162 | 1..104 | 517 | 94.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA27071-PA | 168 | GA27071-PA | 59..168 | 1..110 | 547 | 94.5 | Plus |
Dpse\GA30097-PB | 266 | GA30097-PB | 142..237 | 1..94 | 151 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM26177-PA | 171 | GM26177-PA | 62..171 | 1..110 | 565 | 99.1 | Plus |
Dsec\GM23156-PA | 279 | GM23156-PA | 156..251 | 1..94 | 153 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20031-PA | 276 | GD20031-PA | 153..248 | 1..94 | 153 | 37.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ23663-PA | 168 | GJ23663-PA | 59..168 | 1..110 | 502 | 85.5 | Plus |
Dvir\GJ24273-PA | 270 | GJ24273-PA | 148..243 | 1..94 | 151 | 37.5 | Plus |
Translation from 303 to 635
> RE53107.hyp MGVQANLDDLSEEEKIFYMFKAHDNDNNNALDGLEMIQSAMHHNYDYFKN NERDAYLQNATDELEHFIEAIDKFLLIADDNNDGLLHYPEFVKAITGGKE QPNVDRNILR*