BDGP Sequence Production Resources |
Search the DGRC for RE53127
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 531 |
Well: | 27 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG15887-RA |
Protein status: | RE53127.pep: gold |
Preliminary Size: | 414 |
Sequenced Size: | 876 |
Gene | Date | Evidence |
---|---|---|
CG15887 | 2002-01-01 | Sim4 clustering to Release 2 |
CG15887 | 2002-01-03 | Blastp of sequenced clone |
CG15887 | 2003-01-01 | Sim4 clustering to Release 3 |
CG15887 | 2008-04-29 | Release 5.5 accounting |
CG15887 | 2008-08-15 | Release 5.9 accounting |
CG15887 | 2008-12-18 | 5.12 accounting |
876 bp (876 high quality bases) assembled on 2002-01-03
GenBank Submission: AY075504
> RE53127.complete CTTCAATTGTTAGCCAGCGTCGGAGTCGAGCAGTGCAGTGTCGAGCGGAT TACCAGATACTCATCCTCAAGGAATCAAATCACCAACAGTCAAATCAAAT CGAAATGGCCGCCAACCAGAAGATTGTGTTCGCCCTCGTCTGCCTCTTTT TGGCATGTGATTTGGTGCTGGGTCAGCAGCAGGCGGCCAACAGCTCGGAT TCGGATTCGGATGTGGCGGAAAGTCGTACTTTTGGCCATCATTTCCTGCG GCGCATCAGCTTCGCCTTGGTGCCCGGCGCCTTTGTCGTGGGCGTGATCA CCACCCTGCTGGCGGCCTTGACCGTCGTCTCCATCAAGGGACTGGGCGTG GGTGTCATCCTGCTGGTGCTGGCCATCGGACAAATGCTGTCCCGTGCTCT TCCCGTCCAGGCAGCCGCCGCCTATGCCGCAGCACCCGTTCCCGTCCAGG CACCCGTGCCGGTGGTCTACTCCCACTCGCACACCCAGCAGCCCGTCTGG TTGGAGAAGGAGTGGTAGATGATTTGTTTCGGTTTTGGCTGACCAGGATG AGAATGCAAGACCAGGGATAACGGCGAGCTGGTAGCGAGTCAGGATTCAG ATTTACCTCAGCCTCAGCGAGCGTTCAACCAAATAATAATTTAAGTATAG TTTAAATTATTTATTTAACTTATTTATTTATTACAAGTCAAGGATGGCAA AGAGAAAGACATTTAGCAGAGAATTTGTACTATGAAATTATTATACAAAT TAGTCTGCTGAATGAAGACAAAACATGTTAAAATATTATAAAGAATTTGG GAAACGAAAAGCTCTAATGAAAAAAAAAAAATACCTATAATAAAAGCACA TTTAAACATCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15887-RA | 1072 | CG15887-RA | 198..1061 | 2..865 | 4275 | 99.6 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 9112818..9112996 | 684..860 | 98 | == | Minus |
chr3R | 9113050..9113460 | 220..630 | 99 | <- | Minus |
chr3R | 9113757..9113974 | 1..219 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 1..414 | 105..518 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 1..414 | 105..518 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 1..414 | 105..518 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 1..414 | 105..518 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 1..414 | 105..518 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 2..860 | 2..860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 2..860 | 2..860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 3..863 | 1..860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 2..860 | 2..860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG15887-RA | 3..863 | 1..860 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13287655..13288295 | 220..860 | 99 | <- | Minus |
3R | 13288592..13288809 | 1..219 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13287655..13288295 | 220..860 | 99 | <- | Minus |
3R | 13288592..13288809 | 1..219 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13287655..13288295 | 220..860 | 99 | <- | Minus |
3R | 13288592..13288809 | 1..219 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 9113377..9114017 | 220..860 | 99 | <- | Minus |
arm_3R | 9114314..9114531 | 1..219 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 13028486..13029126 | 220..860 | 99 | <- | Minus |
3R | 13029423..13029640 | 1..219 | 99 | Minus |
Translation from 2 to 517
> RE53127.hyp SIVSQRRSRAVQCRTDYQILILKESNHQQSNQIEMAANQKIVFALVCLFL ACDLVLGQQQAANSSDSDSDVAESRTFGHHFLRRISFALVPGAFVVGVIT TLLAALTVVSIKGLGVGVILLVLAIGQMLSRALPVQAAAAYAAAPVPVQA PVPVVYSHSHTQQPVWLEKEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15887-PA | 137 | CG15887-PA | 1..137 | 35..171 | 681 | 100 | Plus |
Translation from 104 to 517
> RE53127.pep MAANQKIVFALVCLFLACDLVLGQQQAANSSDSDSDVAESRTFGHHFLRR ISFALVPGAFVVGVITTLLAALTVVSIKGLGVGVILLVLAIGQMLSRALP VQAAAAYAAAPVPVQAPVPVVYSHSHTQQPVWLEKEW*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF17395-PA | 135 | GF17395-PA | 1..135 | 1..137 | 537 | 87.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG17066-PA | 137 | GG17066-PA | 1..137 | 1..137 | 690 | 98.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19147-PA | 131 | GH19147-PA | 1..131 | 1..137 | 419 | 78.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG15887-PA | 137 | CG15887-PA | 1..137 | 1..137 | 681 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23255-PA | 128 | GI23255-PA | 24..128 | 25..137 | 410 | 89.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23073-PA | 134 | GL23073-PA | 1..134 | 1..137 | 500 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14005-PA | 134 | GA14005-PA | 1..134 | 1..137 | 500 | 88.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM20676-PA | 137 | GM20676-PA | 1..137 | 1..137 | 693 | 99.3 | Plus |
Dsec\GM25951-PA | 137 | GM25951-PA | 1..137 | 1..137 | 693 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD20510-PA | 137 | GD20510-PA | 1..137 | 1..137 | 693 | 99.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ10751-PA | 129 | GJ10751-PA | 1..129 | 1..137 | 462 | 77.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK13359-PA | 135 | GK13359-PA | 1..135 | 1..137 | 506 | 84.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE24456-PA | 137 | GE24456-PA | 1..137 | 1..137 | 686 | 97.8 | Plus |