Clone RE53127 Report

Search the DGRC for RE53127

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:531
Well:27
Vector:pFlc-1
Associated Gene/TranscriptCG15887-RA
Protein status:RE53127.pep: gold
Preliminary Size:414
Sequenced Size:876

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG15887 2002-01-01 Sim4 clustering to Release 2
CG15887 2002-01-03 Blastp of sequenced clone
CG15887 2003-01-01 Sim4 clustering to Release 3
CG15887 2008-04-29 Release 5.5 accounting
CG15887 2008-08-15 Release 5.9 accounting
CG15887 2008-12-18 5.12 accounting

Clone Sequence Records

RE53127.complete Sequence

876 bp (876 high quality bases) assembled on 2002-01-03

GenBank Submission: AY075504

> RE53127.complete
CTTCAATTGTTAGCCAGCGTCGGAGTCGAGCAGTGCAGTGTCGAGCGGAT
TACCAGATACTCATCCTCAAGGAATCAAATCACCAACAGTCAAATCAAAT
CGAAATGGCCGCCAACCAGAAGATTGTGTTCGCCCTCGTCTGCCTCTTTT
TGGCATGTGATTTGGTGCTGGGTCAGCAGCAGGCGGCCAACAGCTCGGAT
TCGGATTCGGATGTGGCGGAAAGTCGTACTTTTGGCCATCATTTCCTGCG
GCGCATCAGCTTCGCCTTGGTGCCCGGCGCCTTTGTCGTGGGCGTGATCA
CCACCCTGCTGGCGGCCTTGACCGTCGTCTCCATCAAGGGACTGGGCGTG
GGTGTCATCCTGCTGGTGCTGGCCATCGGACAAATGCTGTCCCGTGCTCT
TCCCGTCCAGGCAGCCGCCGCCTATGCCGCAGCACCCGTTCCCGTCCAGG
CACCCGTGCCGGTGGTCTACTCCCACTCGCACACCCAGCAGCCCGTCTGG
TTGGAGAAGGAGTGGTAGATGATTTGTTTCGGTTTTGGCTGACCAGGATG
AGAATGCAAGACCAGGGATAACGGCGAGCTGGTAGCGAGTCAGGATTCAG
ATTTACCTCAGCCTCAGCGAGCGTTCAACCAAATAATAATTTAAGTATAG
TTTAAATTATTTATTTAACTTATTTATTTATTACAAGTCAAGGATGGCAA
AGAGAAAGACATTTAGCAGAGAATTTGTACTATGAAATTATTATACAAAT
TAGTCTGCTGAATGAAGACAAAACATGTTAAAATATTATAAAGAATTTGG
GAAACGAAAAGCTCTAATGAAAAAAAAAAAATACCTATAATAAAAGCACA
TTTAAACATCAAAAAAAAAAAAAAAA

RE53127.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 20:48:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG15887-RA 1072 CG15887-RA 198..1061 2..865 4275 99.6 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 02:18:53
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 9112818..9113461 860..219 3110 99.2 Minus
chr3R 27901430 chr3R 9113757..9113974 219..2 1075 99.5 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:04 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 02:18:52
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 13287650..13288296 865..219 3205 99.7 Minus
3R 32079331 3R 13288592..13288809 219..2 1075 99.5 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 22:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 13028481..13029127 865..219 3205 99.6 Minus
3R 31820162 3R 13029423..13029640 219..2 1075 99.5 Minus
Blast to na_te.dros performed on 2019-03-16 02:18:52 has no hits.

RE53127.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 02:19:47 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 9112818..9112996 684..860 98 == Minus
chr3R 9113050..9113460 220..630 99 <- Minus
chr3R 9113757..9113974 1..219 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:25 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 1..414 105..518 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 20:43:15 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 1..414 105..518 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:19:23 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 1..414 105..518 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:22:19 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 1..414 105..518 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 05:05:05 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 1..414 105..518 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 00:50:43 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 2..860 2..860 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 20:43:15 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 2..860 2..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:19:23 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 3..863 1..860 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:22:19 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 2..860 2..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 05:05:05 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
CG15887-RA 3..863 1..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:47 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13287655..13288295 220..860 99 <- Minus
3R 13288592..13288809 1..219 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:47 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13287655..13288295 220..860 99 <- Minus
3R 13288592..13288809 1..219 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 02:19:47 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13287655..13288295 220..860 99 <- Minus
3R 13288592..13288809 1..219 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:19:23 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 9113377..9114017 220..860 99 <- Minus
arm_3R 9114314..9114531 1..219 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 17:56:56 Download gff for RE53127.complete
Subject Subject Range Query Range Percent Splice Strand
3R 13028486..13029126 220..860 99 <- Minus
3R 13029423..13029640 1..219 99   Minus

RE53127.hyp Sequence

Translation from 2 to 517

> RE53127.hyp
SIVSQRRSRAVQCRTDYQILILKESNHQQSNQIEMAANQKIVFALVCLFL
ACDLVLGQQQAANSSDSDSDVAESRTFGHHFLRRISFALVPGAFVVGVIT
TLLAALTVVSIKGLGVGVILLVLAIGQMLSRALPVQAAAAYAAAPVPVQA
PVPVVYSHSHTQQPVWLEKEW*

RE53127.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:48:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG15887-PA 137 CG15887-PA 1..137 35..171 681 100 Plus

RE53127.pep Sequence

Translation from 104 to 517

> RE53127.pep
MAANQKIVFALVCLFLACDLVLGQQQAANSSDSDSDVAESRTFGHHFLRR
ISFALVPGAFVVGVITTLLAALTVVSIKGLGVGVILLVLAIGQMLSRALP
VQAAAAYAAAPVPVQAPVPVVYSHSHTQQPVWLEKEW*

RE53127.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 22:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF17395-PA 135 GF17395-PA 1..135 1..137 537 87.6 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG17066-PA 137 GG17066-PA 1..137 1..137 690 98.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19147-PA 131 GH19147-PA 1..131 1..137 419 78.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG15887-PA 137 CG15887-PA 1..137 1..137 681 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 22:25:06
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23255-PA 128 GI23255-PA 24..128 25..137 410 89.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23073-PA 134 GL23073-PA 1..134 1..137 500 88.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 22:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14005-PA 134 GA14005-PA 1..134 1..137 500 88.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 22:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM20676-PA 137 GM20676-PA 1..137 1..137 693 99.3 Plus
Dsec\GM25951-PA 137 GM25951-PA 1..137 1..137 693 99.3 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 22:25:08
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD20510-PA 137 GD20510-PA 1..137 1..137 693 99.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 22:25:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ10751-PA 129 GJ10751-PA 1..129 1..137 462 77.4 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 22:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK13359-PA 135 GK13359-PA 1..135 1..137 506 84.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 22:25:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE24456-PA 137 GE24456-PA 1..137 1..137 686 97.8 Plus