Clone RE53130 Report

Search the DGRC for RE53130

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:531
Well:30
Vector:pFlc-1
Associated Gene/TranscriptL-RA
Protein status:RE53130.pep: gold
Preliminary Size:2067
Sequenced Size:2627

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG10109 2002-01-01 Sim4 clustering to Release 2
CG10109 2002-03-20 Blastp of sequenced clone
CG10109 2003-01-01 Sim4 clustering to Release 3
L 2008-04-29 Release 5.5 accounting
L 2008-08-15 Release 5.9 accounting
L 2008-12-18 5.12 accounting

Clone Sequence Records

RE53130.complete Sequence

2627 bp (2627 high quality bases) assembled on 2002-03-20

GenBank Submission: AY094886

> RE53130.complete
ATGAGGCAAACAACCTCCTGATATCGGAGACAGTCGACAAAAAAATTGAA
CGGTTGTGGGTGTATGCTATGTTCGATTGTTTTCGGTCACCAGAAGAAAA
CTCGTAAAATCTCGGAATACCCGCAAATGCCCGTCGACTTCTGACTCGAG
GGGTTCTTGAATTGCACTCGAAGTATCGAACAACATTGAGCGGGAAAGTG
ATTTAAAGGACTCGTTGTTAGTTATTATCAAGCGCTGCAAGATATAAATT
AGGAAGAGGAAGAAGAACATCGAAGTGTTTTGCTAGTGAAGTGAGAAGAA
ATATAGAAAGAGAGAGAGAGAAAGAGAGCAACGCATCAATTACCGTTATC
AGCTAACCGGCAATAACAAAATCATGTTGATCTCGTGCAAATGCTCGAAT
TTCGTTGCTTCGACTTCGAAATTGCAGCGCAGCAACAGCAGCAGCGGCGC
AGGGGGCCGCGTGGGCGGTGCAGAGGTCGCCAGCGGCGAGGTACCCACCG
CGATCCTCCTGTCGCAGGTGTTCCAGCAGAAGTATCCTCTGGACTTCGTC
TTCTACAGCCATATCATGGAGTTCTTTAAGCACGCCTATGGTCCCATTCC
AGACCTCACCGTGGCTGTGATTAATCAGCGGGAGCTGTTGTATGGTCTCA
CCCTGGAAGCCGCTGGCCAGAGTTGGCAGCTGAGCCTGTGCATCAACTGC
AAGGAGGTGCTATGCGCCAAGCGATTGACGGCGGGCGCCGGGGCCACGCC
CACTCTCTACCTCATCAACTGCACGCTGTTGACCAGCAGCGAGGAGCTGG
CTCAACGGAAGTCCAACAAAGCCTTCTCGGAGACCTTCGAGCTGCTGATC
ATGGATCACACAGGCAGTGACTCTGGATCCACTCGACCCACCAGTGGACT
ATCCAACTCCGCATCGAGTCTAAGCATCGGATCCCTGTCTTCGAATCCCA
CTGATGCCAGGGTGCAGAGATTGAGAATGATACAAGCGCACCAGCAGGCG
CGATTGCAGGAGGAGATTGTGGAGACAAATGAGAGAATCGAGCGGTATAC
GCGCACTCAGTTCCAGTTACTAAACAGTTTCCGGGAGAAATCGGATCAGG
ACTGCGCGTTGCTATTCAAAGTTATTCGTGCGTTGCCCGAGCAGGCCTCG
GAGCTACTCGATCGTGCCATGCTCCCTGCCCTTGATGTGGCGGCCAATCA
GCCGCAGAGTGCGACTGCCCGGCGCAGGAACACCATCAGCAGCCGGCGGG
AGTTGAATGGTGGACCCACCACACCCACTACTACGTTGACACATCCGCCC
AACTTCCTATCGCTGAACCAGCAGCCGCAGCAACAGTTGCTGGCGCAGCA
ACAGCAGCAACAGTTGCAGGCGCAACAGCAGCAGCAGCAGCAGGCCCCGC
AGAGTGTCTCGATGGCCAGGAAGATGTCGCACTTTGACACACCGCCCGCC
ACCCCAGAAGCCACGCCCATGAGCGTGGGCAACAGCCCCACCTTCCGGCA
GCAATCAGCAGCCGGCGGTGCTGGTGGTCCACCCACCCAGACGTTGACCC
CAAATGGAGTGGGTCAGTCCAGTGTTAACGAAGATGCAGATGACTGCCTG
TTCGATCTGGAGGATGTGGATGCTCCGGTTCCGGTTCAGTCCGTGCCTGT
GCCTAGCTACACGCGTAGCCTGATCTACCAGCAGCAGCCTCAGCACAATC
CCTTCCAGCAGCTGAGCCAACAAAATGGCCTACGAAGTGTCCTAGATGAC
GAAGCTGCGGATGAAGCTGAAGATGCTCTGGACCCGGATAGCTCCATTTC
CATACCAGTGCGAGGCGGAGGGCGTCCTAGCCATGCGCAGTTGATGAACT
TCGCCCGGAGTCTGCCCATCGAGATAGCAAACACCACGCTGGCCGAGAGA
GCTGCTGTGGCCAACAACAATAACTTCGGGCAGGGCTGCGAGGAGGGAAT
GGACAACATCGACATAGCGGCAAGCATCCAAGCGCTGACCAGAAGTGTCC
ATGGCGAGGCTGTTTTTGGGGACTTGCCACGGCCCCGCCTGCGATCTCAG
ATCGAGGGCTAGCTAAGCTGGCAGGGATTTTGGAGTCACCACTACGTACA
CATAAATATATCAGCTCGCAATCTGCATAATTTGTTTGCCTGTCGCCTAG
CCGCCGCCTTCAAAATTGTTTTCGCTATTTGAACTAAATTAGTTGCTCAA
CGAAACAAGGATACACGAAGCGCCTTCCACAGACACCCACAAATACCCAC
ATGTCCTTCATATAACACATGAAACACATGAACACCACATACGCACCACC
TACAAACTACCAAGTACCAATTAAGCAGACAGTTTGCAATTTCTTTAATT
ATACATCGCCTATAAGTTTTCTTTCATTTTTTCGGATGATCTTCGATTGG
AAATGTGTATTTTCTTCGTTCGACGAGTGTACGCCTATCATCGGCTGTTG
CACATTGAGTTAACTAACTGATACTGATACTGATGATGTTGTTAGTTTAT
ACAATGAATAATCTAGTATACATATACATTATATATATTATAAAATACAT
AAAGAATGCCATCAGCTTCAGCTGTGACACAGGCAAGACGCATCACAAAA
GCGTCCAATTTAAAAAAAAAAAAAAAA

RE53130.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
L-RA 2643 L-RA 36..2643 4..2611 13040 100 Plus
L.a 2097 L.a 70..2097 584..2611 10140 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 21:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 10382455..10383643 584..1772 5945 100 Plus
chr2R 21145070 chr2R 10383948..10384615 1944..2611 3340 100 Plus
chr2R 21145070 chr2R 10368517..10369097 4..584 2905 100 Plus
chr2R 21145070 chr2R 10383708..10383883 1771..1946 880 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:05 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 21:16:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 14495152..14496340 584..1772 5945 100 Plus
2R 25286936 2R 14496645..14497313 1944..2612 3345 100 Plus
2R 25286936 2R 14481211..14481791 4..584 2905 100 Plus
2R 25286936 2R 14496405..14496580 1771..1946 880 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:49:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 14496351..14497539 584..1772 5945 100 Plus
2R 25260384 2R 14497844..14498512 1944..2612 3345 100 Plus
2R 25260384 2R 14482410..14482990 4..584 2905 100 Plus
2R 25260384 2R 14497604..14497779 1771..1946 880 100 Plus
Blast to na_te.dros performed on 2019-03-16 21:16:51 has no hits.

RE53130.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 21:18:01 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 10368514..10369096 1..583 99 -> Plus
chr2R 10382455..10383190 584..1319 100 == Plus
chr2R 10383265..10383643 1394..1772 100 -> Plus
chr2R 10383710..10383882 1773..1945 100 -> Plus
chr2R 10383950..10384615 1946..2611 100   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:52:46 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 1..1689 374..2062 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:26:12 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 1..1689 374..2062 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:36:12 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 1..1689 374..2062 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:01:27 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 1..1689 374..2062 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:03 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 1..1689 374..2062 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:52:46 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 6..2616 1..2611 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:26:12 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 6..2616 1..2611 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:36:12 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 22..2632 1..2611 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:01:27 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 6..2616 1..2611 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:03 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
L-RA 22..2632 1..2611 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:01 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14481208..14481790 1..583 99 -> Plus
2R 14495152..14496340 584..1772 100 -> Plus
2R 14496407..14496579 1773..1945 100 -> Plus
2R 14496647..14497312 1946..2611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:01 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14481208..14481790 1..583 99 -> Plus
2R 14495152..14496340 584..1772 100 -> Plus
2R 14496407..14496579 1773..1945 100 -> Plus
2R 14496647..14497312 1946..2611 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 21:18:01 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14481208..14481790 1..583 99 -> Plus
2R 14495152..14496340 584..1772 100 -> Plus
2R 14496407..14496579 1773..1945 100 -> Plus
2R 14496647..14497312 1946..2611 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:36:12 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 10368713..10369295 1..583 99 -> Plus
arm_2R 10382657..10383845 584..1772 100 -> Plus
arm_2R 10383912..10384084 1773..1945 100 -> Plus
arm_2R 10384152..10384817 1946..2611 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:34:37 Download gff for RE53130.complete
Subject Subject Range Query Range Percent Splice Strand
2R 14482407..14482989 1..583 99 -> Plus
2R 14496351..14497539 584..1772 100 -> Plus
2R 14497606..14497778 1773..1945 100 -> Plus
2R 14497846..14498511 1946..2611 100   Plus

RE53130.pep Sequence

Translation from 373 to 2061

> RE53130.pep
MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF
QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS
WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA
FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL
RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV
IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT
PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK
MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS
VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ
NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE
IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD
LPRPRLRSQIEG*

RE53130.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:51:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF13508-PA 548 GF13508-PA 1..548 1..562 1690 66.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:51:59
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20461-PA 553 GG20461-PA 1..553 1..562 2523 93.8 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22784-PA 611 GH22784-PA 1..611 1..560 1071 49.4 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
PRAS40-PA 562 CG46146-PA 1..562 1..562 2855 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:52:05
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI20580-PA 546 GI20580-PA 3..546 4..560 842 42.2 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:52:07
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL11442-PA 570 GL11442-PA 1..570 1..562 1404 60.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:52:10
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA10079-PA 569 GA10079-PA 1..569 1..562 1408 60.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:52:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21551-PA 562 GM21551-PA 1..562 1..562 2910 97.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:52:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11057-PA 561 GD11057-PA 1..561 1..562 2896 97.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:52:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ20761-PA 582 GJ20761-PA 1..582 1..560 1243 51.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:52:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22939-PA 547 GK22939-PA 1..547 1..560 1030 50.5 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:52:19
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE13592-PA 558 GE13592-PA 1..558 1..562 2855 96.4 Plus

RE53130.hyp Sequence

Translation from 373 to 2061

> RE53130.hyp
MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF
QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS
WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA
FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL
RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV
IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT
PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK
MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS
VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ
NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE
IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD
LPRPRLRSQIEG*

RE53130.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:08:56
Subject Length Description Subject Range Query Range Score Percent Strand
L-PA 562 CG10109-PA 1..562 1..562 2855 100 Plus