BDGP Sequence Production Resources |
Search the DGRC for RE53130
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 531 |
Well: | 30 |
Vector: | pFlc-1 |
Associated Gene/Transcript | L-RA |
Protein status: | RE53130.pep: gold |
Preliminary Size: | 2067 |
Sequenced Size: | 2627 |
Gene | Date | Evidence |
---|---|---|
CG10109 | 2002-01-01 | Sim4 clustering to Release 2 |
CG10109 | 2002-03-20 | Blastp of sequenced clone |
CG10109 | 2003-01-01 | Sim4 clustering to Release 3 |
L | 2008-04-29 | Release 5.5 accounting |
L | 2008-08-15 | Release 5.9 accounting |
L | 2008-12-18 | 5.12 accounting |
2627 bp (2627 high quality bases) assembled on 2002-03-20
GenBank Submission: AY094886
> RE53130.complete ATGAGGCAAACAACCTCCTGATATCGGAGACAGTCGACAAAAAAATTGAA CGGTTGTGGGTGTATGCTATGTTCGATTGTTTTCGGTCACCAGAAGAAAA CTCGTAAAATCTCGGAATACCCGCAAATGCCCGTCGACTTCTGACTCGAG GGGTTCTTGAATTGCACTCGAAGTATCGAACAACATTGAGCGGGAAAGTG ATTTAAAGGACTCGTTGTTAGTTATTATCAAGCGCTGCAAGATATAAATT AGGAAGAGGAAGAAGAACATCGAAGTGTTTTGCTAGTGAAGTGAGAAGAA ATATAGAAAGAGAGAGAGAGAAAGAGAGCAACGCATCAATTACCGTTATC AGCTAACCGGCAATAACAAAATCATGTTGATCTCGTGCAAATGCTCGAAT TTCGTTGCTTCGACTTCGAAATTGCAGCGCAGCAACAGCAGCAGCGGCGC AGGGGGCCGCGTGGGCGGTGCAGAGGTCGCCAGCGGCGAGGTACCCACCG CGATCCTCCTGTCGCAGGTGTTCCAGCAGAAGTATCCTCTGGACTTCGTC TTCTACAGCCATATCATGGAGTTCTTTAAGCACGCCTATGGTCCCATTCC AGACCTCACCGTGGCTGTGATTAATCAGCGGGAGCTGTTGTATGGTCTCA CCCTGGAAGCCGCTGGCCAGAGTTGGCAGCTGAGCCTGTGCATCAACTGC AAGGAGGTGCTATGCGCCAAGCGATTGACGGCGGGCGCCGGGGCCACGCC CACTCTCTACCTCATCAACTGCACGCTGTTGACCAGCAGCGAGGAGCTGG CTCAACGGAAGTCCAACAAAGCCTTCTCGGAGACCTTCGAGCTGCTGATC ATGGATCACACAGGCAGTGACTCTGGATCCACTCGACCCACCAGTGGACT ATCCAACTCCGCATCGAGTCTAAGCATCGGATCCCTGTCTTCGAATCCCA CTGATGCCAGGGTGCAGAGATTGAGAATGATACAAGCGCACCAGCAGGCG CGATTGCAGGAGGAGATTGTGGAGACAAATGAGAGAATCGAGCGGTATAC GCGCACTCAGTTCCAGTTACTAAACAGTTTCCGGGAGAAATCGGATCAGG ACTGCGCGTTGCTATTCAAAGTTATTCGTGCGTTGCCCGAGCAGGCCTCG GAGCTACTCGATCGTGCCATGCTCCCTGCCCTTGATGTGGCGGCCAATCA GCCGCAGAGTGCGACTGCCCGGCGCAGGAACACCATCAGCAGCCGGCGGG AGTTGAATGGTGGACCCACCACACCCACTACTACGTTGACACATCCGCCC AACTTCCTATCGCTGAACCAGCAGCCGCAGCAACAGTTGCTGGCGCAGCA ACAGCAGCAACAGTTGCAGGCGCAACAGCAGCAGCAGCAGCAGGCCCCGC AGAGTGTCTCGATGGCCAGGAAGATGTCGCACTTTGACACACCGCCCGCC ACCCCAGAAGCCACGCCCATGAGCGTGGGCAACAGCCCCACCTTCCGGCA GCAATCAGCAGCCGGCGGTGCTGGTGGTCCACCCACCCAGACGTTGACCC CAAATGGAGTGGGTCAGTCCAGTGTTAACGAAGATGCAGATGACTGCCTG TTCGATCTGGAGGATGTGGATGCTCCGGTTCCGGTTCAGTCCGTGCCTGT GCCTAGCTACACGCGTAGCCTGATCTACCAGCAGCAGCCTCAGCACAATC CCTTCCAGCAGCTGAGCCAACAAAATGGCCTACGAAGTGTCCTAGATGAC GAAGCTGCGGATGAAGCTGAAGATGCTCTGGACCCGGATAGCTCCATTTC CATACCAGTGCGAGGCGGAGGGCGTCCTAGCCATGCGCAGTTGATGAACT TCGCCCGGAGTCTGCCCATCGAGATAGCAAACACCACGCTGGCCGAGAGA GCTGCTGTGGCCAACAACAATAACTTCGGGCAGGGCTGCGAGGAGGGAAT GGACAACATCGACATAGCGGCAAGCATCCAAGCGCTGACCAGAAGTGTCC ATGGCGAGGCTGTTTTTGGGGACTTGCCACGGCCCCGCCTGCGATCTCAG ATCGAGGGCTAGCTAAGCTGGCAGGGATTTTGGAGTCACCACTACGTACA CATAAATATATCAGCTCGCAATCTGCATAATTTGTTTGCCTGTCGCCTAG CCGCCGCCTTCAAAATTGTTTTCGCTATTTGAACTAAATTAGTTGCTCAA CGAAACAAGGATACACGAAGCGCCTTCCACAGACACCCACAAATACCCAC ATGTCCTTCATATAACACATGAAACACATGAACACCACATACGCACCACC TACAAACTACCAAGTACCAATTAAGCAGACAGTTTGCAATTTCTTTAATT ATACATCGCCTATAAGTTTTCTTTCATTTTTTCGGATGATCTTCGATTGG AAATGTGTATTTTCTTCGTTCGACGAGTGTACGCCTATCATCGGCTGTTG CACATTGAGTTAACTAACTGATACTGATACTGATGATGTTGTTAGTTTAT ACAATGAATAATCTAGTATACATATACATTATATATATTATAAAATACAT AAAGAATGCCATCAGCTTCAGCTGTGACACAGGCAAGACGCATCACAAAA GCGTCCAATTTAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 10382455..10383643 | 584..1772 | 5945 | 100 | Plus |
chr2R | 21145070 | chr2R | 10383948..10384615 | 1944..2611 | 3340 | 100 | Plus |
chr2R | 21145070 | chr2R | 10368517..10369097 | 4..584 | 2905 | 100 | Plus |
chr2R | 21145070 | chr2R | 10383708..10383883 | 1771..1946 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 14495152..14496340 | 584..1772 | 5945 | 100 | Plus |
2R | 25286936 | 2R | 14496645..14497313 | 1944..2612 | 3345 | 100 | Plus |
2R | 25286936 | 2R | 14481211..14481791 | 4..584 | 2905 | 100 | Plus |
2R | 25286936 | 2R | 14496405..14496580 | 1771..1946 | 880 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 14496351..14497539 | 584..1772 | 5945 | 100 | Plus |
2R | 25260384 | 2R | 14497844..14498512 | 1944..2612 | 3345 | 100 | Plus |
2R | 25260384 | 2R | 14482410..14482990 | 4..584 | 2905 | 100 | Plus |
2R | 25260384 | 2R | 14497604..14497779 | 1771..1946 | 880 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 10368514..10369096 | 1..583 | 99 | -> | Plus |
chr2R | 10382455..10383190 | 584..1319 | 100 | == | Plus |
chr2R | 10383265..10383643 | 1394..1772 | 100 | -> | Plus |
chr2R | 10383710..10383882 | 1773..1945 | 100 | -> | Plus |
chr2R | 10383950..10384615 | 1946..2611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 1..1689 | 374..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 1..1689 | 374..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 1..1689 | 374..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 1..1689 | 374..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 1..1689 | 374..2062 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 6..2616 | 1..2611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 6..2616 | 1..2611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 22..2632 | 1..2611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 6..2616 | 1..2611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
L-RA | 22..2632 | 1..2611 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14481208..14481790 | 1..583 | 99 | -> | Plus |
2R | 14495152..14496340 | 584..1772 | 100 | -> | Plus |
2R | 14496407..14496579 | 1773..1945 | 100 | -> | Plus |
2R | 14496647..14497312 | 1946..2611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14481208..14481790 | 1..583 | 99 | -> | Plus |
2R | 14495152..14496340 | 584..1772 | 100 | -> | Plus |
2R | 14496407..14496579 | 1773..1945 | 100 | -> | Plus |
2R | 14496647..14497312 | 1946..2611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14481208..14481790 | 1..583 | 99 | -> | Plus |
2R | 14495152..14496340 | 584..1772 | 100 | -> | Plus |
2R | 14496407..14496579 | 1773..1945 | 100 | -> | Plus |
2R | 14496647..14497312 | 1946..2611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 10368713..10369295 | 1..583 | 99 | -> | Plus |
arm_2R | 10382657..10383845 | 584..1772 | 100 | -> | Plus |
arm_2R | 10383912..10384084 | 1773..1945 | 100 | -> | Plus |
arm_2R | 10384152..10384817 | 1946..2611 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 14482407..14482989 | 1..583 | 99 | -> | Plus |
2R | 14496351..14497539 | 584..1772 | 100 | -> | Plus |
2R | 14497606..14497778 | 1773..1945 | 100 | -> | Plus |
2R | 14497846..14498511 | 1946..2611 | 100 | Plus |
Translation from 373 to 2061
> RE53130.pep MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD LPRPRLRSQIEG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF13508-PA | 548 | GF13508-PA | 1..548 | 1..562 | 1690 | 66.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG20461-PA | 553 | GG20461-PA | 1..553 | 1..562 | 2523 | 93.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH22784-PA | 611 | GH22784-PA | 1..611 | 1..560 | 1071 | 49.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
PRAS40-PA | 562 | CG46146-PA | 1..562 | 1..562 | 2855 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI20580-PA | 546 | GI20580-PA | 3..546 | 4..560 | 842 | 42.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL11442-PA | 570 | GL11442-PA | 1..570 | 1..562 | 1404 | 60.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA10079-PA | 569 | GA10079-PA | 1..569 | 1..562 | 1408 | 60.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM21551-PA | 562 | GM21551-PA | 1..562 | 1..562 | 2910 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD11057-PA | 561 | GD11057-PA | 1..561 | 1..562 | 2896 | 97.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ20761-PA | 582 | GJ20761-PA | 1..582 | 1..560 | 1243 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK22939-PA | 547 | GK22939-PA | 1..547 | 1..560 | 1030 | 50.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE13592-PA | 558 | GE13592-PA | 1..558 | 1..562 | 2855 | 96.4 | Plus |
Translation from 373 to 2061
> RE53130.hyp MLISCKCSNFVASTSKLQRSNSSSGAGGRVGGAEVASGEVPTAILLSQVF QQKYPLDFVFYSHIMEFFKHAYGPIPDLTVAVINQRELLYGLTLEAAGQS WQLSLCINCKEVLCAKRLTAGAGATPTLYLINCTLLTSSEELAQRKSNKA FSETFELLIMDHTGSDSGSTRPTSGLSNSASSLSIGSLSSNPTDARVQRL RMIQAHQQARLQEEIVETNERIERYTRTQFQLLNSFREKSDQDCALLFKV IRALPEQASELLDRAMLPALDVAANQPQSATARRRNTISSRRELNGGPTT PTTTLTHPPNFLSLNQQPQQQLLAQQQQQQLQAQQQQQQQAPQSVSMARK MSHFDTPPATPEATPMSVGNSPTFRQQSAAGGAGGPPTQTLTPNGVGQSS VNEDADDCLFDLEDVDAPVPVQSVPVPSYTRSLIYQQQPQHNPFQQLSQQ NGLRSVLDDEAADEAEDALDPDSSISIPVRGGGRPSHAQLMNFARSLPIE IANTTLAERAAVANNNNFGQGCEEGMDNIDIAASIQALTRSVHGEAVFGD LPRPRLRSQIEG*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
L-PA | 562 | CG10109-PA | 1..562 | 1..562 | 2855 | 100 | Plus |