BDGP Sequence Production Resources |
Search the DGRC for RE53210
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 532 |
Well: | 10 |
Vector: | pFlc-1 |
Associated Gene/Transcript | squ-RA |
Protein status: | RE53210.pep: gold |
Sequenced Size: | 1051 |
Gene | Date | Evidence |
---|---|---|
squ | 2009-06-08 | Manual selection by Joe Carlson |
1051 bp assembled on 2009-08-05
GenBank Submission: BT089046.1
> RE53210.complete AGTCTCAGATTCTGAGAACTTGTTGACAGTGTAGCTGTTCAATTGTTTTC ATGGCGAGTTCTCGGAGTATTTTTTGTTAGACAACGCACGATCATGGCAT GGGTTCCCAATTCGCAGTTCGAGGATGATCTGGTCGACATGGAGCCGGAT TTCAATTTTGTCCATGGTCAACTGGCCTACGACATGAAGAAGCAAGGGGA GTTTTGGCCGCGACCGAAATGCACATATGAATATCTGAAGTCCCGGGAAA AGAGGAATTCCGAGCTCGAAAATATCCATGGAAGCAGAGGCGGAACTGGT CGTGATATTCGGCAAAGCCTTCAGCTAATGGAGAACATACAGAAGATAGC AGGCACAAGGCCGCTGGGCGAGCACGCCACTATGAAAGATTGGGAGGATG AAAGCACAAATGAGCTAGAGGCGTTAGCCATGATGCGTCACTTCGGAATG ATGTCCATGGCAACAGATTCGCTGCCCGTTCTGCCCGAAGTAAAACCACC AGAAGGACCCATTAAAATTATAAGAAACGGACGGAAACAATTTCCCCTCA TCACAGACCCCGAATTTTTTAAACCACGCAAGATTCCCCGAACGAAGAAT TCCAGTTCCAGTAGTTCGTATCATACTGCCAATAGTTCAATCAGTTCCTT CAGCCTTTATGAATCTGCCGCTTCAGATTTGGACAGCAGCAAGAAGCAGG GCGAGATCAAGGCGTCAAAGTCGGAGAAATACCTCGAAGTACCTTACAAA CAGCTTGCGGAGAGTTACGACCAGGAAGTGGAATCACCAGTCCAATTTGG AAACCAATTCAATGAATGAAGGAGGAACCAACGGGGAATGCAATTATTAG AACCAAAAAATCAATCACTTTTTATATATAAGCTTCTGTAACATGTAAAT AAACGGCTTAAACGTCGTTTAGAAAACCGAATTTATATTGGATGCAGTTC TACAAATAGAAAGAAAAATACTTGATATCATAGGGTAAACAAAATATTTA TCTATTTTAATAAATTAAATGCGAAAGGAAAAAACAAAAAAAAAAAAAAA A
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
squ-RA | 1407 | squ-RA | 348..1377 | 1..1030 | 5150 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 3245..3428 | 842..1032 | 137 | 58.7 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 16679268..16679347 | 1..80 | 100 | -> | Plus |
chr2L | 16679403..16680306 | 81..984 | 100 | -> | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 1..726 | 94..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 1..726 | 94..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 1..726 | 94..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 1..726 | 94..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 343..1161 | 1..819 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 343..1370 | 1..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 345..1372 | 1..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
squ-RA | 345..1372 | 1..1028 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16680571..16680650 | 1..80 | 100 | -> | Plus |
2L | 16680706..16681655 | 81..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16680571..16680650 | 1..80 | 100 | -> | Plus |
2L | 16680706..16681655 | 81..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16680571..16680650 | 1..80 | 100 | -> | Plus |
2L | 16680706..16681655 | 81..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 16680571..16680650 | 1..80 | 100 | -> | Plus |
arm_2L | 16680706..16681655 | 81..1030 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 16680706..16681655 | 81..1030 | 100 | Plus | |
2L | 16680571..16680650 | 1..80 | 100 | -> | Plus |
Translation from 93 to 818
> RE53210.pep MAWVPNSQFEDDLVDMEPDFNFVHGQLAYDMKKQGEFWPRPKCTYEYLKS REKRNSELENIHGSRGGTGRDIRQSLQLMENIQKIAGTRPLGEHATMKDW EDESTNELEALAMMRHFGMMSMATDSLPVLPEVKPPEGPIKIIRNGRKQF PLITDPEFFKPRKIPRTKNSSSSSSYHTANSSISSFSLYESAASDLDSSK KQGEIKASKSEKYLEVPYKQLAESYDQEVESPVQFGNQFNE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF14004-PA | 282 | GF14004-PA | 1..246 | 1..229 | 637 | 52.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG22758-PA | 271 | GG22758-PA | 1..247 | 1..240 | 987 | 76.5 | Plus |
Dere\GG10241-PA | 237 | GG10241-PA | 1..192 | 1..191 | 500 | 51.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH25198-PA | 206 | GH25198-PA | 1..160 | 1..161 | 521 | 57.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
squ-PC | 241 | CG4711-PC | 1..241 | 1..241 | 1264 | 100 | Plus |
squ-PB | 241 | CG4711-PB | 1..241 | 1..241 | 1264 | 100 | Plus |
squ-PA | 241 | CG4711-PA | 1..241 | 1..241 | 1264 | 100 | Plus |
CG15484-PA | 206 | CG15484-PA | 1..182 | 1..181 | 457 | 49.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17267-PA | 232 | GI17267-PA | 1..213 | 1..228 | 562 | 49.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12351-PA | 278 | GL12351-PA | 1..209 | 1..199 | 526 | 48.8 | Plus |
Dper\GL19649-PA | 149 | GL19649-PA | 1..149 | 1..147 | 437 | 53 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA13764-PA | 278 | GA13764-PA | 1..209 | 1..199 | 527 | 47.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM17192-PA | 242 | GM17192-PA | 1..212 | 1..205 | 933 | 87.3 | Plus |
Dsec\GM26009-PA | 125 | GM26009-PA | 1..111 | 1..133 | 283 | 45.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24068-PA | 242 | GD24068-PA | 1..212 | 1..205 | 937 | 87.3 | Plus |
Dsim\GD22100-PA | 143 | GD22100-PA | 1..129 | 1..133 | 359 | 51.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ22736-PA | 260 | GJ22736-PA | 1..230 | 1..232 | 544 | 46.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18923-PA | 266 | GK18923-PA | 1..234 | 1..224 | 569 | 49.8 | Plus |
Translation from 93 to 818
> RE53210.hyp MAWVPNSQFEDDLVDMEPDFNFVHGQLAYDMKKQGEFWPRPKCTYEYLKS REKRNSELENIHGSRGGTGRDIRQSLQLMENIQKIAGTRPLGEHATMKDW EDESTNELEALAMMRHFGMMSMATDSLPVLPEVKPPEGPIKIIRNGRKQF PLITDPEFFKPRKIPRTKNSSSSSSYHTANSSISSFSLYESAASDLDSSK KQGEIKASKSEKYLEVPYKQLAESYDQEVESPVQFGNQFNE*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
squ-PC | 241 | CG4711-PC | 1..241 | 1..241 | 1264 | 100 | Plus |
squ-PB | 241 | CG4711-PB | 1..241 | 1..241 | 1264 | 100 | Plus |
squ-PA | 241 | CG4711-PA | 1..241 | 1..241 | 1264 | 100 | Plus |
CG15484-PA | 206 | CG15484-PA | 1..182 | 1..181 | 457 | 49.7 | Plus |