Clone RE53262 Report

Search the DGRC for RE53262

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:532
Well:62
Vector:pFlc-1
Associated Gene/TranscriptCG6024-RC
Protein status:RE53262.pep: gold
Sequenced Size:3139

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG6024 2003-01-01 Sim4 clustering to Release 3
CG6024 2008-04-29 Release 5.5 accounting
CG6024 2008-08-15 Release 5.9 accounting
CG6024 2008-12-18 5.12 accounting

Clone Sequence Records

RE53262.complete Sequence

3139 bp (3139 high quality bases) assembled on 2004-12-16

GenBank Submission: BT021262

> RE53262.complete
AGTTCGCCGTCAACTTCGCTCCGTTCCGGTTACCACGATGTTTCGATTGG
AAAAGATGTGCCTAGCCAGTGCGATAAAAATATAAACAAATACAACGAAA
CTCAAAACCGCATTTAATGCGCTGATTTCGCAGTGTTAATTACGCGAACA
ATTAACATTTCCATTCGCAAAGTCAAAAATCCAAGCTGACCACCCTTTTT
TTTGAGTCTCTGTGGAGCTACATTGCCGTCTCACTTGCACACGGCTTGGC
AATCGATAAGCCTAACAGCGGGGCTGTCCACTTGCTGACAGCTGTTAACT
GTAGCTGTAAGCTAGCGGCGAGTGCTTGAAGAGTGAAATTGGAACACTGG
CCGAAACCCGTTAATCTCCGATGAGGCGACACATTCGGGTGAAGGAAAAT
TCATAAATGAAAGCTTCTAATTGCCGGAGAATGACAAACGCGACAAGAAA
TCATCGCGAGCGAACAAAAGCGAAGCCAACTTTTTAGGCACCCCGACGGC
AGCAGTAGCGAAAGCCACGAAAATTGAGCCACCGAAGCTTCGGCGATGCT
GTTGATGCCCACATCCTGTGGGCCGGGTCCACCCAACGACCACGGCCCCA
TGTCCTTGCCCACTTCCTCCCCCTCCTGCTCCAAACGCGCCCGCATACCC
ACGCGAGCGGCAGATGATGATGAGCCGTTGCGGCGGTCAGGGACCCTAAC
CCAAAGGCAAAGTTCGGGGTCGGGCATTCCCCAATGGCTGCTAATCCTCA
TCGGACTCCTCGCCATTCTCGCCCAGACACCAGGCAGCCAGGTGGCCGCC
GAGAAGAGTAAACACTATTACATGCAGTCGCTGTGCAAGAACCACTTCCT
CCAGCAGCTGTACCGAAAGATCGATGGAGCGGTGCTCTGGTCACAGAACG
AGCGGAATCTGGACTGCATTATCACCTTCCAGACGCACTCGGTGCTGCAG
CGCTTCATGCTCCGCTTCGACATGCTGCAGTTGGACTGCAACGATCACCT
GCTGGTTTACGATGGCGCCCACGCCGTCGCCACGCCCAAGATTGACATCT
CCTGTCGGAACACAAAGAACACCGTCAACGCGCTCCTGACGCGCACGAAC
TTTGTGACACTGAAGTACGTGACCGATGGCTGGGGAACGGATGCGAACGG
CTTCAAGCTGGTGATTACGTCGGTGAAGGATCCCAAGCACACCTGCAAGG
ACTTCACCTGCGCCACCCGCGAGTTCTGCATCCATCCCGATCTCCTCTGC
GATGGCATCAACCACTGCGGCGACAACTCCGACGAATCCGTGCAGAATCT
GTGCCAGAATGAGACGAGCAGCACGGTTTTTGGCCTGGACATGACCTGGT
TCGTCCTCATTGTCGTCGGTGTGCTGCTCGTCCTGAGCGCGCTCATCGTG
GCAGTGGCCATTTGTGTGTGCCGGCGACAGGATGAGAATGCCGCCAACCA
GAACACCGCGCTCCAAGTGCACCATACGGCCGACACGAACGGGTCGTCGA
AACATCTGCACTACCACGGCATCAGTGTCGGCGGGACACTGACGCGGGAG
CACACCCAACTGCCGACGTCGGGAAACTGGCATCACCCTGCGGGACCATC
CGGGTACCACCGCACTCCACACAACTACTTGAAGATGGCCACCAAAGTCC
GTCCCATTTGGTGCTTGGCAAATTCCGTCAATTAGGTCAAGATCTTTCCC
ACAATACCGCCGGGCTCAGCCAGACGAACATCGCCGGAACCGGACATCCC
AATGCCAACGCCGTCGGCGCTGCGCAAAAGGACGAGTGGTTCGTCTAGAG
CCAGGCAACACTGTGGAAGGACCGATTGACTTGAGCACAATAATCTGTAC
TTTATTAAGTAAATTTATGGATATTTGCAGAGCATTAAATGAAGACTATA
AGACTATAATTAACAACAATTAGTGTGGACATCACCGCGCAGGGTGTATT
ATATAGAGATCTCTACTCGTACCCAAGCAGAATCTCGAACGCATTGGGCA
GAACCAGCCTGTTCTGTCGGATAACCAATGCACTTGTAAATAGTTTATAA
ATATATCATTTTTATTTAACTGATTAATACAACAAGCTGGCTACACAAGA
TCCCACAATCCAAATATCCTCTAAAAACGATATGTAATACAGAAGATTTC
CCCCCCTCAAGTATCATAATTTTGTGCAAGTATGTTGGCATTTATTTAGA
GAATTACATATGTTTAGATGGCAATTAGATTTGAATTAATGCTCTTCGAT
TAAACACTTGTGTTAGGTTTGCATAGCACGGATTAAGATACCCCAAAGTA
ATTGTATAACGAATCAGATGTAGTCGCCGATTCTGAGAGGTAAACTAACA
TTTGAGCGAAACAATCGTAAGCATTTAATTGAATTGTGAACAGAAACCGA
AAGAAGTATTAAAGCTCAACAAGAATAACCGATAACTGTCATTAATATAC
AACTTCCGAAACTTACAAATTTGAGATACACAACTGGCAGTGCTGTTGGC
CAGGGCGTTTTTACAAAAACTTAAGCTGAATTCTAATCACAAAATGGACA
CAAGAAGATCAACAAAAACAAGGGATGTACATAAGTAGTCGACAATATAC
TTACCAAAATAATAATACAAACAAGCAAACGAACAAAATCGAAACTTCAA
ATGCAACTGTCATCATCTATACAATTTCACCTACCACCACTCACCATTGT
CGTCCACTTGGAAGTCTGCACTTGCCGGATGATCAGCTTTGGATCATCTG
GGGATTATCCAGAATCTCCGATAGAAGCAAACATTTCACCGAGAGACTCA
TTTCCTCATCAAAGAACCGAAAAAACCAATGCTAAACGGGAATATTCTGA
GACATTAAGGACAATACAGTGAAATCTTTTGCTTTTGATACAACTAAATT
GAGAAGGTGTCGTGGCATGCATTTTAACCTACTAAAGAAGTGTCCGAAAT
ACAATTTTCTACAATCAACCAAATGGAATTCTACACAAAATTGAACAACC
TAAAAGAAATACATAAACAGAGTTGAAACATTTTGCTACAAAATCGAATG
ATAACGATCATATTATTATTATATATTGACGACGATGTGTGTGAGGAAAC
ATGATATGTACGAGTAACTTGAGAAAAAAAAAAAAAAAA

RE53262.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6024.b 5045 CG6024.b 1..3133 1..3133 15650 99.9 Plus
CG6024-RC 3439 CG6024-RC 34..3166 1..3133 15650 99.9 Plus
CG6024.a 4742 CG6024.a 1..3133 1..3133 15650 99.9 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 19:55:54
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 11726421..11727649 3123..1894 6025 99.5 Minus
chr3L 24539361 chr3L 11750511..11751001 816..326 2425 99.6 Minus
chr3L 24539361 chr3L 11727741..11728169 1894..1466 2085 99.1 Minus
chr3L 24539361 chr3L 11756750..11757080 331..1 1625 99.4 Minus
chr3L 24539361 chr3L 11734677..11734900 1040..817 1090 99.1 Minus
chr3L 24539361 chr3L 11728233..11728391 1467..1309 765 98.7 Minus
chr3L 24539361 chr3L 11728669..11728815 1185..1039 735 100 Minus
chr3L 24539361 chr3L 11728465..11728592 1313..1186 610 98.4 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:11 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 19:55:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11735526..11736765 3133..1894 6185 99.9 Minus
3L 28110227 3L 11759626..11760116 816..326 2440 99.8 Minus
3L 28110227 3L 11736857..11737285 1894..1466 2145 100 Minus
3L 28110227 3L 11765852..11766182 331..1 1655 100 Minus
3L 28110227 3L 11743806..11744029 1040..817 1120 100 Minus
3L 28110227 3L 11737349..11737507 1467..1309 795 100 Minus
3L 28110227 3L 11737785..11737931 1185..1039 735 100 Minus
3L 28110227 3L 11737581..11737708 1313..1186 625 99.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 11728626..11729865 3133..1894 6185 99.9 Minus
3L 28103327 3L 11752726..11753216 816..326 2440 99.7 Minus
3L 28103327 3L 11729957..11730385 1894..1466 2145 100 Minus
3L 28103327 3L 11758952..11759282 331..1 1655 100 Minus
3L 28103327 3L 11736906..11737129 1040..817 1120 100 Minus
3L 28103327 3L 11730449..11730607 1467..1309 795 100 Minus
3L 28103327 3L 11730885..11731031 1185..1039 735 100 Minus
3L 28103327 3L 11730681..11730808 1313..1186 625 99.2 Minus
Blast to na_te.dros performed 2019-03-15 19:55:53
Subject Length Description Subject Range Query Range Score Percent Strand
HMS-Beagle 7062 HMS-Beagle Beagle 7062bp 972..1116 2935..3079 123 57 Plus

RE53262.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 19:56:33 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 11734677..11734900 817..1040 99 <- Minus
chr3L 11726421..11727649 1894..3123 99 <- Minus
chr3L 11727742..11728167 1468..1893 99 <- Minus
chr3L 11728233..11728391 1309..1467 98 <- Minus
chr3L 11728470..11728592 1186..1308 99 <- Minus
chr3L 11728669..11728813 1041..1185 100 <- Minus
chr3L 11750511..11750995 332..816 99 <- Minus
chr3L 11756750..11757080 1..331 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2010-07-28 17:24:55 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..1140 546..1685 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:22:02 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..1140 546..1685 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 03:00:52 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..1140 546..1685 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:05:59 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..1140 546..1685 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:26:36 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..1140 546..1685 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:24:55 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..3123 1..3123 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:22:02 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..3123 1..3123 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:00:52 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..3123 1..3123 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:05:59 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..3123 1..3123 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:26:36 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
CG6024-RC 1..3123 1..3123 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:33 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11735536..11736765 1894..3123 99 <- Minus
3L 11736858..11737283 1468..1893 100 <- Minus
3L 11737349..11737507 1309..1467 100 <- Minus
3L 11737586..11737708 1186..1308 100 <- Minus
3L 11737785..11737929 1041..1185 100 <- Minus
3L 11743806..11744029 817..1040 100 <- Minus
3L 11759626..11760110 332..816 100 <- Minus
3L 11765852..11766182 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:33 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11735536..11736765 1894..3123 99 <- Minus
3L 11736858..11737283 1468..1893 100 <- Minus
3L 11737349..11737507 1309..1467 100 <- Minus
3L 11737586..11737708 1186..1308 100 <- Minus
3L 11737785..11737929 1041..1185 100 <- Minus
3L 11743806..11744029 817..1040 100 <- Minus
3L 11759626..11760110 332..816 100 <- Minus
3L 11765852..11766182 1..331 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 19:56:33 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11735536..11736765 1894..3123 99 <- Minus
3L 11736858..11737283 1468..1893 100 <- Minus
3L 11737349..11737507 1309..1467 100 <- Minus
3L 11737586..11737708 1186..1308 100 <- Minus
3L 11737785..11737929 1041..1185 100 <- Minus
3L 11743806..11744029 817..1040 100 <- Minus
3L 11759626..11760110 332..816 100 <- Minus
3L 11765852..11766182 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:00:52 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11730885..11731029 1041..1185 100 <- Minus
arm_3L 11736906..11737129 817..1040 100 <- Minus
arm_3L 11728636..11729865 1894..3123 99 <- Minus
arm_3L 11729958..11730383 1468..1893 100 <- Minus
arm_3L 11730449..11730607 1309..1467 100 <- Minus
arm_3L 11730686..11730808 1186..1308 100 <- Minus
arm_3L 11752726..11753210 332..816 100 <- Minus
arm_3L 11758952..11759282 1..331 100   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:42:22 Download gff for RE53262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 11728636..11729865 1894..3123 99 <- Minus
3L 11729958..11730383 1468..1893 100 <- Minus
3L 11730449..11730607 1309..1467 100 <- Minus
3L 11730686..11730808 1186..1308 100 <- Minus
3L 11730885..11731029 1041..1185 100 <- Minus
3L 11736906..11737129 817..1040 100 <- Minus
3L 11752726..11753210 332..816 100 <- Minus
3L 11758952..11759282 1..331 100   Minus

RE53262.pep Sequence

Translation from 545 to 1684

> RE53262.pep
MLLMPTSCGPGPPNDHGPMSLPTSSPSCSKRARIPTRAADDDEPLRRSGT
LTQRQSSGSGIPQWLLILIGLLAILAQTPGSQVAAEKSKHYYMQSLCKNH
FLQQLYRKIDGAVLWSQNERNLDCIITFQTHSVLQRFMLRFDMLQLDCND
HLLVYDGAHAVATPKIDISCRNTKNTVNALLTRTNFVTLKYVTDGWGTDA
NGFKLVITSVKDPKHTCKDFTCATREFCIHPDLLCDGINHCGDNSDESVQ
NLCQNETSSTVFGLDMTWFVLIVVGVLLVLSALIVAVAICVCRRQDENAA
NQNTALQVHHTADTNGSSKHLHYHGISVGGTLTREHTQLPTSGNWHHPAG
PSGYHRTPHNYLKMATKVRPIWCLANSVN*

RE53262.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 16:52:49
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF24517-PA 287 GF24517-PA 1..287 93..379 1507 96.2 Plus
Dana\GF24518-PA 136 GF24518-PA 56..136 35..126 153 44.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 16:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG13892-PA 419 GG13892-PA 1..374 1..371 1827 95.5 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 16:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16384-PA 397 GH16384-PA 1..369 1..371 1497 79.9 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:40:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG6024-PF 379 CG6024-PF 1..379 1..379 2045 100 Plus
CG6024-PC 379 CG6024-PC 1..379 1..379 2045 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 16:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI11577-PA 404 GI11577-PA 1..376 1..371 1495 80.9 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 16:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20827-PA 355 GL20827-PA 26..355 51..379 1569 91.5 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 16:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19305-PA 376 GA19305-PA 26..347 51..371 1525 91.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 16:52:52
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM24716-PA 452 GM24716-PA 1..407 1..371 1934 89.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 16:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD12779-PA 199 GD12779-PA 1..92 1..92 380 92.4 Plus
Dsim\GD12779-PA 199 GD12779-PA 90..158 307..376 347 92.9 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 16:52:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ11256-PA 394 GJ11256-PA 1..366 1..371 1515 82 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 16:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK12384-PA 392 GK12384-PA 1..360 1..371 1456 79.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 16:52:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20183-PA 416 GE20183-PA 1..371 1..371 1777 96.2 Plus

RE53262.hyp Sequence

Translation from 545 to 1684

> RE53262.hyp
MLLMPTSCGPGPPNDHGPMSLPTSSPSCSKRARIPTRAADDDEPLRRSGT
LTQRQSSGSGIPQWLLILIGLLAILAQTPGSQVAAEKSKHYYMQSLCKNH
FLQQLYRKIDGAVLWSQNERNLDCIITFQTHSVLQRFMLRFDMLQLDCND
HLLVYDGAHAVATPKIDISCRNTKNTVNALLTRTNFVTLKYVTDGWGTDA
NGFKLVITSVKDPKHTCKDFTCATREFCIHPDLLCDGINHCGDNSDESVQ
NLCQNETSSTVFGLDMTWFVLIVVGVLLVLSALIVAVAICVCRRQDENAA
NQNTALQVHHTADTNGSSKHLHYHGISVGGTLTREHTQLPTSGNWHHPAG
PSGYHRTPHNYLKMATKVRPIWCLANSVN*

RE53262.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6024-PF 379 CG6024-PF 1..379 1..379 2045 100 Plus
CG6024-PC 379 CG6024-PC 1..379 1..379 2045 100 Plus