BDGP Sequence Production Resources |
Search the DGRC for RE53262
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 532 |
Well: | 62 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG6024-RC |
Protein status: | RE53262.pep: gold |
Sequenced Size: | 3139 |
Gene | Date | Evidence |
---|---|---|
CG6024 | 2003-01-01 | Sim4 clustering to Release 3 |
CG6024 | 2008-04-29 | Release 5.5 accounting |
CG6024 | 2008-08-15 | Release 5.9 accounting |
CG6024 | 2008-12-18 | 5.12 accounting |
3139 bp (3139 high quality bases) assembled on 2004-12-16
GenBank Submission: BT021262
> RE53262.complete AGTTCGCCGTCAACTTCGCTCCGTTCCGGTTACCACGATGTTTCGATTGG AAAAGATGTGCCTAGCCAGTGCGATAAAAATATAAACAAATACAACGAAA CTCAAAACCGCATTTAATGCGCTGATTTCGCAGTGTTAATTACGCGAACA ATTAACATTTCCATTCGCAAAGTCAAAAATCCAAGCTGACCACCCTTTTT TTTGAGTCTCTGTGGAGCTACATTGCCGTCTCACTTGCACACGGCTTGGC AATCGATAAGCCTAACAGCGGGGCTGTCCACTTGCTGACAGCTGTTAACT GTAGCTGTAAGCTAGCGGCGAGTGCTTGAAGAGTGAAATTGGAACACTGG CCGAAACCCGTTAATCTCCGATGAGGCGACACATTCGGGTGAAGGAAAAT TCATAAATGAAAGCTTCTAATTGCCGGAGAATGACAAACGCGACAAGAAA TCATCGCGAGCGAACAAAAGCGAAGCCAACTTTTTAGGCACCCCGACGGC AGCAGTAGCGAAAGCCACGAAAATTGAGCCACCGAAGCTTCGGCGATGCT GTTGATGCCCACATCCTGTGGGCCGGGTCCACCCAACGACCACGGCCCCA TGTCCTTGCCCACTTCCTCCCCCTCCTGCTCCAAACGCGCCCGCATACCC ACGCGAGCGGCAGATGATGATGAGCCGTTGCGGCGGTCAGGGACCCTAAC CCAAAGGCAAAGTTCGGGGTCGGGCATTCCCCAATGGCTGCTAATCCTCA TCGGACTCCTCGCCATTCTCGCCCAGACACCAGGCAGCCAGGTGGCCGCC GAGAAGAGTAAACACTATTACATGCAGTCGCTGTGCAAGAACCACTTCCT CCAGCAGCTGTACCGAAAGATCGATGGAGCGGTGCTCTGGTCACAGAACG AGCGGAATCTGGACTGCATTATCACCTTCCAGACGCACTCGGTGCTGCAG CGCTTCATGCTCCGCTTCGACATGCTGCAGTTGGACTGCAACGATCACCT GCTGGTTTACGATGGCGCCCACGCCGTCGCCACGCCCAAGATTGACATCT CCTGTCGGAACACAAAGAACACCGTCAACGCGCTCCTGACGCGCACGAAC TTTGTGACACTGAAGTACGTGACCGATGGCTGGGGAACGGATGCGAACGG CTTCAAGCTGGTGATTACGTCGGTGAAGGATCCCAAGCACACCTGCAAGG ACTTCACCTGCGCCACCCGCGAGTTCTGCATCCATCCCGATCTCCTCTGC GATGGCATCAACCACTGCGGCGACAACTCCGACGAATCCGTGCAGAATCT GTGCCAGAATGAGACGAGCAGCACGGTTTTTGGCCTGGACATGACCTGGT TCGTCCTCATTGTCGTCGGTGTGCTGCTCGTCCTGAGCGCGCTCATCGTG GCAGTGGCCATTTGTGTGTGCCGGCGACAGGATGAGAATGCCGCCAACCA GAACACCGCGCTCCAAGTGCACCATACGGCCGACACGAACGGGTCGTCGA AACATCTGCACTACCACGGCATCAGTGTCGGCGGGACACTGACGCGGGAG CACACCCAACTGCCGACGTCGGGAAACTGGCATCACCCTGCGGGACCATC CGGGTACCACCGCACTCCACACAACTACTTGAAGATGGCCACCAAAGTCC GTCCCATTTGGTGCTTGGCAAATTCCGTCAATTAGGTCAAGATCTTTCCC ACAATACCGCCGGGCTCAGCCAGACGAACATCGCCGGAACCGGACATCCC AATGCCAACGCCGTCGGCGCTGCGCAAAAGGACGAGTGGTTCGTCTAGAG CCAGGCAACACTGTGGAAGGACCGATTGACTTGAGCACAATAATCTGTAC TTTATTAAGTAAATTTATGGATATTTGCAGAGCATTAAATGAAGACTATA AGACTATAATTAACAACAATTAGTGTGGACATCACCGCGCAGGGTGTATT ATATAGAGATCTCTACTCGTACCCAAGCAGAATCTCGAACGCATTGGGCA GAACCAGCCTGTTCTGTCGGATAACCAATGCACTTGTAAATAGTTTATAA ATATATCATTTTTATTTAACTGATTAATACAACAAGCTGGCTACACAAGA TCCCACAATCCAAATATCCTCTAAAAACGATATGTAATACAGAAGATTTC CCCCCCTCAAGTATCATAATTTTGTGCAAGTATGTTGGCATTTATTTAGA GAATTACATATGTTTAGATGGCAATTAGATTTGAATTAATGCTCTTCGAT TAAACACTTGTGTTAGGTTTGCATAGCACGGATTAAGATACCCCAAAGTA ATTGTATAACGAATCAGATGTAGTCGCCGATTCTGAGAGGTAAACTAACA TTTGAGCGAAACAATCGTAAGCATTTAATTGAATTGTGAACAGAAACCGA AAGAAGTATTAAAGCTCAACAAGAATAACCGATAACTGTCATTAATATAC AACTTCCGAAACTTACAAATTTGAGATACACAACTGGCAGTGCTGTTGGC CAGGGCGTTTTTACAAAAACTTAAGCTGAATTCTAATCACAAAATGGACA CAAGAAGATCAACAAAAACAAGGGATGTACATAAGTAGTCGACAATATAC TTACCAAAATAATAATACAAACAAGCAAACGAACAAAATCGAAACTTCAA ATGCAACTGTCATCATCTATACAATTTCACCTACCACCACTCACCATTGT CGTCCACTTGGAAGTCTGCACTTGCCGGATGATCAGCTTTGGATCATCTG GGGATTATCCAGAATCTCCGATAGAAGCAAACATTTCACCGAGAGACTCA TTTCCTCATCAAAGAACCGAAAAAACCAATGCTAAACGGGAATATTCTGA GACATTAAGGACAATACAGTGAAATCTTTTGCTTTTGATACAACTAAATT GAGAAGGTGTCGTGGCATGCATTTTAACCTACTAAAGAAGTGTCCGAAAT ACAATTTTCTACAATCAACCAAATGGAATTCTACACAAAATTGAACAACC TAAAAGAAATACATAAACAGAGTTGAAACATTTTGCTACAAAATCGAATG ATAACGATCATATTATTATTATATATTGACGACGATGTGTGTGAGGAAAC ATGATATGTACGAGTAACTTGAGAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 11726421..11727649 | 3123..1894 | 6025 | 99.5 | Minus |
chr3L | 24539361 | chr3L | 11750511..11751001 | 816..326 | 2425 | 99.6 | Minus |
chr3L | 24539361 | chr3L | 11727741..11728169 | 1894..1466 | 2085 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 11756750..11757080 | 331..1 | 1625 | 99.4 | Minus |
chr3L | 24539361 | chr3L | 11734677..11734900 | 1040..817 | 1090 | 99.1 | Minus |
chr3L | 24539361 | chr3L | 11728233..11728391 | 1467..1309 | 765 | 98.7 | Minus |
chr3L | 24539361 | chr3L | 11728669..11728815 | 1185..1039 | 735 | 100 | Minus |
chr3L | 24539361 | chr3L | 11728465..11728592 | 1313..1186 | 610 | 98.4 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 11735526..11736765 | 3133..1894 | 6185 | 99.9 | Minus |
3L | 28110227 | 3L | 11759626..11760116 | 816..326 | 2440 | 99.8 | Minus |
3L | 28110227 | 3L | 11736857..11737285 | 1894..1466 | 2145 | 100 | Minus |
3L | 28110227 | 3L | 11765852..11766182 | 331..1 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 11743806..11744029 | 1040..817 | 1120 | 100 | Minus |
3L | 28110227 | 3L | 11737349..11737507 | 1467..1309 | 795 | 100 | Minus |
3L | 28110227 | 3L | 11737785..11737931 | 1185..1039 | 735 | 100 | Minus |
3L | 28110227 | 3L | 11737581..11737708 | 1313..1186 | 625 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 11728626..11729865 | 3133..1894 | 6185 | 99.9 | Minus |
3L | 28103327 | 3L | 11752726..11753216 | 816..326 | 2440 | 99.7 | Minus |
3L | 28103327 | 3L | 11729957..11730385 | 1894..1466 | 2145 | 100 | Minus |
3L | 28103327 | 3L | 11758952..11759282 | 331..1 | 1655 | 100 | Minus |
3L | 28103327 | 3L | 11736906..11737129 | 1040..817 | 1120 | 100 | Minus |
3L | 28103327 | 3L | 11730449..11730607 | 1467..1309 | 795 | 100 | Minus |
3L | 28103327 | 3L | 11730885..11731031 | 1185..1039 | 735 | 100 | Minus |
3L | 28103327 | 3L | 11730681..11730808 | 1313..1186 | 625 | 99.2 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 972..1116 | 2935..3079 | 123 | 57 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 11734677..11734900 | 817..1040 | 99 | <- | Minus |
chr3L | 11726421..11727649 | 1894..3123 | 99 | <- | Minus |
chr3L | 11727742..11728167 | 1468..1893 | 99 | <- | Minus |
chr3L | 11728233..11728391 | 1309..1467 | 98 | <- | Minus |
chr3L | 11728470..11728592 | 1186..1308 | 99 | <- | Minus |
chr3L | 11728669..11728813 | 1041..1185 | 100 | <- | Minus |
chr3L | 11750511..11750995 | 332..816 | 99 | <- | Minus |
chr3L | 11756750..11757080 | 1..331 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..1140 | 546..1685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..1140 | 546..1685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..1140 | 546..1685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..1140 | 546..1685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..1140 | 546..1685 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..3123 | 1..3123 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..3123 | 1..3123 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..3123 | 1..3123 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..3123 | 1..3123 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG6024-RC | 1..3123 | 1..3123 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11735536..11736765 | 1894..3123 | 99 | <- | Minus |
3L | 11736858..11737283 | 1468..1893 | 100 | <- | Minus |
3L | 11737349..11737507 | 1309..1467 | 100 | <- | Minus |
3L | 11737586..11737708 | 1186..1308 | 100 | <- | Minus |
3L | 11737785..11737929 | 1041..1185 | 100 | <- | Minus |
3L | 11743806..11744029 | 817..1040 | 100 | <- | Minus |
3L | 11759626..11760110 | 332..816 | 100 | <- | Minus |
3L | 11765852..11766182 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11735536..11736765 | 1894..3123 | 99 | <- | Minus |
3L | 11736858..11737283 | 1468..1893 | 100 | <- | Minus |
3L | 11737349..11737507 | 1309..1467 | 100 | <- | Minus |
3L | 11737586..11737708 | 1186..1308 | 100 | <- | Minus |
3L | 11737785..11737929 | 1041..1185 | 100 | <- | Minus |
3L | 11743806..11744029 | 817..1040 | 100 | <- | Minus |
3L | 11759626..11760110 | 332..816 | 100 | <- | Minus |
3L | 11765852..11766182 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11735536..11736765 | 1894..3123 | 99 | <- | Minus |
3L | 11736858..11737283 | 1468..1893 | 100 | <- | Minus |
3L | 11737349..11737507 | 1309..1467 | 100 | <- | Minus |
3L | 11737586..11737708 | 1186..1308 | 100 | <- | Minus |
3L | 11737785..11737929 | 1041..1185 | 100 | <- | Minus |
3L | 11743806..11744029 | 817..1040 | 100 | <- | Minus |
3L | 11759626..11760110 | 332..816 | 100 | <- | Minus |
3L | 11765852..11766182 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 11730885..11731029 | 1041..1185 | 100 | <- | Minus |
arm_3L | 11736906..11737129 | 817..1040 | 100 | <- | Minus |
arm_3L | 11728636..11729865 | 1894..3123 | 99 | <- | Minus |
arm_3L | 11729958..11730383 | 1468..1893 | 100 | <- | Minus |
arm_3L | 11730449..11730607 | 1309..1467 | 100 | <- | Minus |
arm_3L | 11730686..11730808 | 1186..1308 | 100 | <- | Minus |
arm_3L | 11752726..11753210 | 332..816 | 100 | <- | Minus |
arm_3L | 11758952..11759282 | 1..331 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 11728636..11729865 | 1894..3123 | 99 | <- | Minus |
3L | 11729958..11730383 | 1468..1893 | 100 | <- | Minus |
3L | 11730449..11730607 | 1309..1467 | 100 | <- | Minus |
3L | 11730686..11730808 | 1186..1308 | 100 | <- | Minus |
3L | 11730885..11731029 | 1041..1185 | 100 | <- | Minus |
3L | 11736906..11737129 | 817..1040 | 100 | <- | Minus |
3L | 11752726..11753210 | 332..816 | 100 | <- | Minus |
3L | 11758952..11759282 | 1..331 | 100 | Minus |
Translation from 545 to 1684
> RE53262.pep MLLMPTSCGPGPPNDHGPMSLPTSSPSCSKRARIPTRAADDDEPLRRSGT LTQRQSSGSGIPQWLLILIGLLAILAQTPGSQVAAEKSKHYYMQSLCKNH FLQQLYRKIDGAVLWSQNERNLDCIITFQTHSVLQRFMLRFDMLQLDCND HLLVYDGAHAVATPKIDISCRNTKNTVNALLTRTNFVTLKYVTDGWGTDA NGFKLVITSVKDPKHTCKDFTCATREFCIHPDLLCDGINHCGDNSDESVQ NLCQNETSSTVFGLDMTWFVLIVVGVLLVLSALIVAVAICVCRRQDENAA NQNTALQVHHTADTNGSSKHLHYHGISVGGTLTREHTQLPTSGNWHHPAG PSGYHRTPHNYLKMATKVRPIWCLANSVN*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF24517-PA | 287 | GF24517-PA | 1..287 | 93..379 | 1507 | 96.2 | Plus |
Dana\GF24518-PA | 136 | GF24518-PA | 56..136 | 35..126 | 153 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13892-PA | 419 | GG13892-PA | 1..374 | 1..371 | 1827 | 95.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH16384-PA | 397 | GH16384-PA | 1..369 | 1..371 | 1497 | 79.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG6024-PF | 379 | CG6024-PF | 1..379 | 1..379 | 2045 | 100 | Plus |
CG6024-PC | 379 | CG6024-PC | 1..379 | 1..379 | 2045 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI11577-PA | 404 | GI11577-PA | 1..376 | 1..371 | 1495 | 80.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL20827-PA | 355 | GL20827-PA | 26..355 | 51..379 | 1569 | 91.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19305-PA | 376 | GA19305-PA | 26..347 | 51..371 | 1525 | 91.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24716-PA | 452 | GM24716-PA | 1..407 | 1..371 | 1934 | 89.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12779-PA | 199 | GD12779-PA | 1..92 | 1..92 | 380 | 92.4 | Plus |
Dsim\GD12779-PA | 199 | GD12779-PA | 90..158 | 307..376 | 347 | 92.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11256-PA | 394 | GJ11256-PA | 1..366 | 1..371 | 1515 | 82 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK12384-PA | 392 | GK12384-PA | 1..360 | 1..371 | 1456 | 79.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE20183-PA | 416 | GE20183-PA | 1..371 | 1..371 | 1777 | 96.2 | Plus |
Translation from 545 to 1684
> RE53262.hyp MLLMPTSCGPGPPNDHGPMSLPTSSPSCSKRARIPTRAADDDEPLRRSGT LTQRQSSGSGIPQWLLILIGLLAILAQTPGSQVAAEKSKHYYMQSLCKNH FLQQLYRKIDGAVLWSQNERNLDCIITFQTHSVLQRFMLRFDMLQLDCND HLLVYDGAHAVATPKIDISCRNTKNTVNALLTRTNFVTLKYVTDGWGTDA NGFKLVITSVKDPKHTCKDFTCATREFCIHPDLLCDGINHCGDNSDESVQ NLCQNETSSTVFGLDMTWFVLIVVGVLLVLSALIVAVAICVCRRQDENAA NQNTALQVHHTADTNGSSKHLHYHGISVGGTLTREHTQLPTSGNWHHPAG PSGYHRTPHNYLKMATKVRPIWCLANSVN*