Clone RE53469 Report

Search the DGRC for RE53469

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:534
Well:69
Vector:pFlc-1
Associated Gene/Transcriptnos-RA
Protein status:RE53469.pep: gold
Sequenced Size:2342

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
nos 2011-08-29 Manual selection by Sue Celniker

Clone Sequence Records

RE53469.complete Sequence

2342 bp assembled on 2011-10-19

GenBank Submission: BT132708.1

> RE53469.complete
AAAATTCCTGGAATTGCCGTACGCTTCGCAGTTGTTTCAAGTTGTCTAAG
GGACATACGATTTTTTTTGCCTCTGCGTCACGATTTTAACCCAAAAGCGA
GTTTAGTTACATGTACATTATTATTAGATAAAGAAGTATCGCGAATACTT
CAGTTGAATAAACTGTGCTTGGTTTTTGGGTGAGGATTTGTGGAAAGTAG
AGTGCGCGATAACCGTAACTTTCGACCCGGATTTTCGCCATGTTCCGCAG
CAACTTGGAGGGCAGTGGCGCAGCAGCAGTAGGTGTTGCAAATCCCCCCT
CGTTGGCTCAGTCTGGAAAGATTTTCCAATTGCAGGATAACTTTTCTGCT
TTTCACGCCAGAGGAGGGCTCAACATTCTGGGCCTGCAGGACATGTATTT
GGATACCAGTGGGGCCAACTCGTCGGCCACTTTGAGTCCGCCCATTACGC
CGGTGACCCCTGACCCGTCGACGTCTGCGCAGTCGACGCACTTCCCTTTT
CTGGCCGACAGCGCAGCCACCGCCAATTCGCTCCTTATGCAGCGACAGTA
CCACTACCACTTGCTGCTCCAGCAGCAGCAGCAACTGGCCATGGCGCAGC
ACCAATTGGCGCTGGCTGCATCAGCGGCAGCGGCTAGTGCGAGTCACCAG
CAAACGGACGAGATTGCGCGATCCTTGAAAATCTTTGCGCAGGTGACGAC
GGGCGCAGCAGAAAATGCGGCTGGCTCGATGCAGGATGTGATGCAGGAGT
TCGCGACCAATGGCTATGCCAGCGATGATCTCGGTCGCATGTCCTACGGG
AGTGCTCCGCCACAGGTGCAAATGCCACCGCAGCAGCAGCATCAGCAACA
GCAGGGGCTGCACCTGCCACTGGGCCGCAATCCTGCCCAGCTGCAGACCA
ATGGCGGCAACTTAATGCCCATTCCACTCGCCACCCACTGGCTGAACAAC
TACCGGGAGCATCTGAACAACGTGTGGCGAAACATGTCGTATATACCAGC
CGCTCCCAATACAATGGGTTTGCAGGCCCAAACAGCGGCCACTGTGTCCA
CCAATCTCGGCGTGGGAATGGGTCTGGGATTGCCCGTGCAGGGCGAACAG
CTGCGCGGAGCTTCCAATTCCAGTAACAATAATAACAACAACAACAAGGT
GTACAAGCGTTACAACAGCAAGGCCAAAGAGATCAGCCGCCACTGCGTCT
TTTGTGAGAATAACAACGAACCAGAGGCGGTTATCAATAGCCACTCAGTG
CGAGATAACTTTAACCGAGTGCTGTGCCCCAAACTACGCACCTACGTGTG
CCCCATCTGCGGGGCATCTGGGGACTCGGCGCACACGATTAAGTACTGCC
CCAAGAAGCCGATCATCACCATGGAGGATGCGATCAAGGCGGAATCGTTC
CGCCTAGCCAAGAGCAGTTACTACAAGCAACAGATGAAGGTTTAGAGAGG
GCGAATCCAGCTCTGGAGCAGAGGCTCTGGCAGCTTTTGCAGCGTTTATA
TAACATGAAATATATATACGCATTCCGATCAAAGCTGGGTTAACCAGATA
GATAGATAGTAACGTTTAAATAGCGCCTGGCGCGTTCGATTTTAAAGAGA
TTTAGAGCGTTATCCCGTGCCTATAGATCTTATAGTATAGACAACGAACG
ATCACTCAAATCCAAGTCAATAATTCAAGAATTTATGTCTGTTTCTGTGA
AAGGGAAACTAATTTTGTTAAAGAAGACTTACAATATCGTAATACTTGTT
CAATCGTCGTGGCCGATAGAAATATCTTACAATCCGAAAGTTGATGAATG
GAATTGGTCTGCAACTGGTCGCCTTCATTTCGTAAAATGTTCGCTTGCGG
CCGAAAAATTTCGATATATCTACAATTGATCTACAATCTTTACTAAATTT
TGAAAAAGGAACACTTTGAATTTCGAACTGTCAATCGTATCATTAGAATT
TAATCTAAATTTAAATCTTGCTAAAGGAAATAGCAAGGAACACTTTCGTC
GTCGGCTACGCATTCATTGTAAAATTTTAAATTTTGACATTCCGCACTTT
TTGATAGATAAGCGAAGAGTATTTTTATTACATGTATCGCAAGTATTCAT
TTCAACACACATATCTATATATATATATATATATATATATATATATATAT
ATATATATATGTTATATATTTATTCAATTTTGTTTACCATTGATCAATTT
TTCACACATGAAACAACCGCCAGCATTATATAATTTTTTTATTTTTTTAA
AAAATGTGTACACATATTCTGAAAATGAAAAATTCAATGGCTCGAGTGCC
AAATAAAGAAATGGTTACAATTTAAAGAAAAAAAAAAAAAAA

RE53469.complete Blast Records

Blast to d_melanogaster_OreR.fa performed 2019-03-15 11:29:34
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 14983016..14984160 1180..2325 5620 99.7 Plus
chr3R 27901430 chr3R 14981218..14981928 1..711 3555 100 Plus
chr3R 27901430 chr3R 14982472..14982944 709..1181 2365 100 Plus
chr2R 21145070 chr2R 14230563..14230619 2160..2104 240 94.7 Minus
chr2R 21145070 chr2R 9878884..9878927 2147..2104 190 95.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 11:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19159057..19160209 1180..2334 5680 99.7 Plus
3R 32079331 3R 19157262..19157972 1..711 3555 100 Plus
3R 32079331 3R 19158513..19158985 709..1181 2365 100 Plus
2R 25286936 2R 13991566..13991609 2147..2104 205 97.7 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 18:16:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 18899888..18901040 1180..2334 5690 99.6 Plus
3R 31820162 3R 18898093..18898803 1..711 3555 100 Plus
3R 31820162 3R 18899344..18899816 709..1181 2365 100 Plus
2R 25260384 2R 13992765..13992808 2147..2104 205 97.7 Minus
Blast to na_te.dros performed 2019-03-15 11:29:32
Subject Length Description Subject Range Query Range Score Percent Strand
roo 9092 roo DM_ROO 9092bp 1185..1389 2094..2289 182 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6758..6898 813..955 161 58 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2325..2495 807..973 160 59 Plus
gypsy5 7369 gypsy5 GYPSY5 7369bp 386..687 1973..2280 159 54.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6794 813..870 155 74.1 Plus
roo 9092 roo DM_ROO 9092bp 1061..1124 807..870 140 68.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6731..6873 506..652 138 60.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6886 540..653 138 61.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6773 824..870 136 76.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6725..6829 807..910 135 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6767..6856 807..896 134 63.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2343..2397 810..864 131 70.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6797..6912 540..652 131 59.5 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 103..228 488..612 131 61.2 Plus
TART-B 10654 TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). 9133..9258 488..612 131 61.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6779..6819 813..853 124 78 Plus
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3261..3371 540..654 124 59.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2810..2857 539..586 123 72.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6739..6859 539..653 122 59.5 Plus
roo 9092 roo DM_ROO 9092bp 1105..1157 818..870 121 69.8 Plus
roo 9092 roo DM_ROO 9092bp 1073..1147 807..880 120 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6782..6893 807..911 118 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6814..6860 539..585 118 72.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1587 810..858 117 75 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6781..6892 539..653 117 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2397..2448 819..870 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2439..2490 813..864 116 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6826 540..642 115 58.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6880..6938 806..864 115 66.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6769 820..872 114 70.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6841 539..653 114 58.8 Plus

RE53469.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 11:30:18 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 14981218..14981928 1..711 100 -> Plus
chr3R 14982475..14982944 712..1181 100 -> Plus
chr3R 14983018..14983946 1182..2110 100 == Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-10-19 14:57:42 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 1..1206 240..1445 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-03 21:45:30 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 1..1206 240..1445 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-26 17:36:27 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 1..1206 240..1445 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-19 14:57:41 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 23..2346 1..2327 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 21:45:30 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 25..2348 1..2327 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:36:27 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
nos-RA 25..2348 1..2327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:30:18 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19157262..19157972 1..711 100 -> Plus
3R 19158516..19158985 712..1181 100 -> Plus
3R 19159059..19160201 1182..2327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:30:18 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19157262..19157972 1..711 100 -> Plus
3R 19158516..19158985 712..1181 100 -> Plus
3R 19159059..19160201 1182..2327 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 11:30:18 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19157262..19157972 1..711 100 -> Plus
3R 19158516..19158985 712..1181 100 -> Plus
3R 19159059..19160201 1182..2327 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 21:45:30 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14982984..14983694 1..711 100 -> Plus
arm_3R 14984238..14984707 712..1181 100 -> Plus
arm_3R 14984781..14985923 1182..2327 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 11:37:28 Download gff for RE53469.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18898093..18898803 1..711 100 -> Plus
3R 18899347..18899816 712..1181 100 -> Plus
3R 18899890..18901032 1182..2327 99   Plus

RE53469.hyp Sequence

Translation from 239 to 1444

> RE53469.hyp
MFRSNLEGSGAAAVGVANPPSLAQSGKIFQLQDNFSAFHARGGLNILGLQ
DMYLDTSGANSSATLSPPITPVTPDPSTSAQSTHFPFLADSAATANSLLM
QRQYHYHLLLQQQQQLAMAQHQLALAASAAAASASHQQTDEIARSLKIFA
QVTTGAAENAAGSMQDVMQEFATNGYASDDLGRMSYGSAPPQVQMPPQQQ
HQQQQGLHLPLGRNPAQLQTNGGNLMPIPLATHWLNNYREHLNNVWRNMS
YIPAAPNTMGLQAQTAATVSTNLGVGMGLGLPVQGEQLRGASNSSNNNNN
NNKVYKRYNSKAKEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLR
TYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAESFRLAKSSYYKQQMK
V*

RE53469.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 17:33:26
Subject Length Description Subject Range Query Range Score Percent Strand
nos-PA 401 CG5637-PA 1..401 1..401 2086 100 Plus
nos-PB 382 CG5637-PB 1..382 1..401 1962 95.3 Plus

RE53469.pep Sequence

Translation from 239 to 1444

> RE53469.pep
MFRSNLEGSGAAAVGVANPPSLAQSGKIFQLQDNFSAFHARGGLNILGLQ
DMYLDTSGANSSATLSPPITPVTPDPSTSAQSTHFPFLADSAATANSLLM
QRQYHYHLLLQQQQQLAMAQHQLALAASAAAASASHQQTDEIARSLKIFA
QVTTGAAENAAGSMQDVMQEFATNGYASDDLGRMSYGSAPPQVQMPPQQQ
HQQQQGLHLPLGRNPAQLQTNGGNLMPIPLATHWLNNYREHLNNVWRNMS
YIPAAPNTMGLQAQTAATVSTNLGVGMGLGLPVQGEQLRGASNSSNNNNN
NNKVYKRYNSKAKEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLR
TYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAESFRLAKSSYYKQQMK
V*

RE53469.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 23:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\nos-PA 390 GF16053-PA 1..390 1..401 1127 62.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 23:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG23152-PA 407 GG23152-PA 1..407 1..401 1506 81.7 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 23:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH19104-PA 396 GH19104-PA 14..396 33..401 874 54.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:11:29
Subject Length Description Subject Range Query Range Score Percent Strand
nos-PA 401 CG5637-PA 1..401 1..401 2086 100 Plus
nos-PB 382 CG5637-PB 1..382 1..401 1962 95.3 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 23:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI23557-PA 373 GI23557-PA 15..373 33..401 805 53.7 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 23:22:41
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL23824-PA 501 GL23824-PA 13..201 94..289 318 44.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 23:22:42
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA19020-PB 413 GA19020-PB 1..413 1..401 923 51.7 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 23:22:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\nos-PA 404 GM26825-PA 1..404 1..401 1655 91.9 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 23:22:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\nos-PA 385 GD19274-PA 1..385 1..401 1548 87.2 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 23:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\nos-PA 380 GJ23536-PA 15..380 33..401 777 52.3 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 23:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK14056-PA 407 GK14056-PA 1..387 1..401 875 53.6 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 23:22:47
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25585-PA 406 GE25585-PA 1..406 1..401 1522 79.8 Plus
Dyak\GE14621-PA 235 GE14621-PA 1..235 168..401 974 81.7 Plus