BDGP Sequence Production Resources |
Search the DGRC for RE53469
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 534 |
Well: | 69 |
Vector: | pFlc-1 |
Associated Gene/Transcript | nos-RA |
Protein status: | RE53469.pep: gold |
Sequenced Size: | 2342 |
Gene | Date | Evidence |
---|---|---|
nos | 2011-08-29 | Manual selection by Sue Celniker |
2342 bp assembled on 2011-10-19
GenBank Submission: BT132708.1
> RE53469.complete AAAATTCCTGGAATTGCCGTACGCTTCGCAGTTGTTTCAAGTTGTCTAAG GGACATACGATTTTTTTTGCCTCTGCGTCACGATTTTAACCCAAAAGCGA GTTTAGTTACATGTACATTATTATTAGATAAAGAAGTATCGCGAATACTT CAGTTGAATAAACTGTGCTTGGTTTTTGGGTGAGGATTTGTGGAAAGTAG AGTGCGCGATAACCGTAACTTTCGACCCGGATTTTCGCCATGTTCCGCAG CAACTTGGAGGGCAGTGGCGCAGCAGCAGTAGGTGTTGCAAATCCCCCCT CGTTGGCTCAGTCTGGAAAGATTTTCCAATTGCAGGATAACTTTTCTGCT TTTCACGCCAGAGGAGGGCTCAACATTCTGGGCCTGCAGGACATGTATTT GGATACCAGTGGGGCCAACTCGTCGGCCACTTTGAGTCCGCCCATTACGC CGGTGACCCCTGACCCGTCGACGTCTGCGCAGTCGACGCACTTCCCTTTT CTGGCCGACAGCGCAGCCACCGCCAATTCGCTCCTTATGCAGCGACAGTA CCACTACCACTTGCTGCTCCAGCAGCAGCAGCAACTGGCCATGGCGCAGC ACCAATTGGCGCTGGCTGCATCAGCGGCAGCGGCTAGTGCGAGTCACCAG CAAACGGACGAGATTGCGCGATCCTTGAAAATCTTTGCGCAGGTGACGAC GGGCGCAGCAGAAAATGCGGCTGGCTCGATGCAGGATGTGATGCAGGAGT TCGCGACCAATGGCTATGCCAGCGATGATCTCGGTCGCATGTCCTACGGG AGTGCTCCGCCACAGGTGCAAATGCCACCGCAGCAGCAGCATCAGCAACA GCAGGGGCTGCACCTGCCACTGGGCCGCAATCCTGCCCAGCTGCAGACCA ATGGCGGCAACTTAATGCCCATTCCACTCGCCACCCACTGGCTGAACAAC TACCGGGAGCATCTGAACAACGTGTGGCGAAACATGTCGTATATACCAGC CGCTCCCAATACAATGGGTTTGCAGGCCCAAACAGCGGCCACTGTGTCCA CCAATCTCGGCGTGGGAATGGGTCTGGGATTGCCCGTGCAGGGCGAACAG CTGCGCGGAGCTTCCAATTCCAGTAACAATAATAACAACAACAACAAGGT GTACAAGCGTTACAACAGCAAGGCCAAAGAGATCAGCCGCCACTGCGTCT TTTGTGAGAATAACAACGAACCAGAGGCGGTTATCAATAGCCACTCAGTG CGAGATAACTTTAACCGAGTGCTGTGCCCCAAACTACGCACCTACGTGTG CCCCATCTGCGGGGCATCTGGGGACTCGGCGCACACGATTAAGTACTGCC CCAAGAAGCCGATCATCACCATGGAGGATGCGATCAAGGCGGAATCGTTC CGCCTAGCCAAGAGCAGTTACTACAAGCAACAGATGAAGGTTTAGAGAGG GCGAATCCAGCTCTGGAGCAGAGGCTCTGGCAGCTTTTGCAGCGTTTATA TAACATGAAATATATATACGCATTCCGATCAAAGCTGGGTTAACCAGATA GATAGATAGTAACGTTTAAATAGCGCCTGGCGCGTTCGATTTTAAAGAGA TTTAGAGCGTTATCCCGTGCCTATAGATCTTATAGTATAGACAACGAACG ATCACTCAAATCCAAGTCAATAATTCAAGAATTTATGTCTGTTTCTGTGA AAGGGAAACTAATTTTGTTAAAGAAGACTTACAATATCGTAATACTTGTT CAATCGTCGTGGCCGATAGAAATATCTTACAATCCGAAAGTTGATGAATG GAATTGGTCTGCAACTGGTCGCCTTCATTTCGTAAAATGTTCGCTTGCGG CCGAAAAATTTCGATATATCTACAATTGATCTACAATCTTTACTAAATTT TGAAAAAGGAACACTTTGAATTTCGAACTGTCAATCGTATCATTAGAATT TAATCTAAATTTAAATCTTGCTAAAGGAAATAGCAAGGAACACTTTCGTC GTCGGCTACGCATTCATTGTAAAATTTTAAATTTTGACATTCCGCACTTT TTGATAGATAAGCGAAGAGTATTTTTATTACATGTATCGCAAGTATTCAT TTCAACACACATATCTATATATATATATATATATATATATATATATATAT ATATATATATGTTATATATTTATTCAATTTTGTTTACCATTGATCAATTT TTCACACATGAAACAACCGCCAGCATTATATAATTTTTTTATTTTTTTAA AAAATGTGTACACATATTCTGAAAATGAAAAATTCAATGGCTCGAGTGCC AAATAAAGAAATGGTTACAATTTAAAGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3R | 27901430 | chr3R | 14983016..14984160 | 1180..2325 | 5620 | 99.7 | Plus |
chr3R | 27901430 | chr3R | 14981218..14981928 | 1..711 | 3555 | 100 | Plus |
chr3R | 27901430 | chr3R | 14982472..14982944 | 709..1181 | 2365 | 100 | Plus |
chr2R | 21145070 | chr2R | 14230563..14230619 | 2160..2104 | 240 | 94.7 | Minus |
chr2R | 21145070 | chr2R | 9878884..9878927 | 2147..2104 | 190 | 95.5 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 32079331 | 3R | 19159057..19160209 | 1180..2334 | 5680 | 99.7 | Plus |
3R | 32079331 | 3R | 19157262..19157972 | 1..711 | 3555 | 100 | Plus |
3R | 32079331 | 3R | 19158513..19158985 | 709..1181 | 2365 | 100 | Plus |
2R | 25286936 | 2R | 13991566..13991609 | 2147..2104 | 205 | 97.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3R | 31820162 | 3R | 18899888..18901040 | 1180..2334 | 5690 | 99.6 | Plus |
3R | 31820162 | 3R | 18898093..18898803 | 1..711 | 3555 | 100 | Plus |
3R | 31820162 | 3R | 18899344..18899816 | 709..1181 | 2365 | 100 | Plus |
2R | 25260384 | 2R | 13992765..13992808 | 2147..2104 | 205 | 97.7 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
roo | 9092 | roo DM_ROO 9092bp | 1185..1389 | 2094..2289 | 182 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6898 | 813..955 | 161 | 58 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2495 | 807..973 | 160 | 59 | Plus |
gypsy5 | 7369 | gypsy5 GYPSY5 7369bp | 386..687 | 1973..2280 | 159 | 54.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6794 | 813..870 | 155 | 74.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1061..1124 | 807..870 | 140 | 68.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6873 | 506..652 | 138 | 60.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6886 | 540..653 | 138 | 61.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6773 | 824..870 | 136 | 76.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6725..6829 | 807..910 | 135 | 60 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6856 | 807..896 | 134 | 63.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2343..2397 | 810..864 | 131 | 70.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6912 | 540..652 | 131 | 59.5 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 103..228 | 488..612 | 131 | 61.2 | Plus |
TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9133..9258 | 488..612 | 131 | 61.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6819 | 813..853 | 124 | 78 | Plus |
Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3261..3371 | 540..654 | 124 | 59.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2857 | 539..586 | 123 | 72.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6739..6859 | 539..653 | 122 | 59.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1105..1157 | 818..870 | 121 | 69.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1073..1147 | 807..880 | 120 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6893 | 807..911 | 118 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6814..6860 | 539..585 | 118 | 72.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1536..1587 | 810..858 | 117 | 75 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6781..6892 | 539..653 | 117 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2397..2448 | 819..870 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2490 | 813..864 | 116 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6826 | 540..642 | 115 | 58.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6880..6938 | 806..864 | 115 | 66.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6769 | 820..872 | 114 | 70.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6841 | 539..653 | 114 | 58.8 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 14981218..14981928 | 1..711 | 100 | -> | Plus |
chr3R | 14982475..14982944 | 712..1181 | 100 | -> | Plus |
chr3R | 14983018..14983946 | 1182..2110 | 100 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 1..1206 | 240..1445 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 1..1206 | 240..1445 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 1..1206 | 240..1445 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 23..2346 | 1..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 25..2348 | 1..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
nos-RA | 25..2348 | 1..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19157262..19157972 | 1..711 | 100 | -> | Plus |
3R | 19158516..19158985 | 712..1181 | 100 | -> | Plus |
3R | 19159059..19160201 | 1182..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19157262..19157972 | 1..711 | 100 | -> | Plus |
3R | 19158516..19158985 | 712..1181 | 100 | -> | Plus |
3R | 19159059..19160201 | 1182..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 19157262..19157972 | 1..711 | 100 | -> | Plus |
3R | 19158516..19158985 | 712..1181 | 100 | -> | Plus |
3R | 19159059..19160201 | 1182..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 14982984..14983694 | 1..711 | 100 | -> | Plus |
arm_3R | 14984238..14984707 | 712..1181 | 100 | -> | Plus |
arm_3R | 14984781..14985923 | 1182..2327 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 18898093..18898803 | 1..711 | 100 | -> | Plus |
3R | 18899347..18899816 | 712..1181 | 100 | -> | Plus |
3R | 18899890..18901032 | 1182..2327 | 99 | Plus |
Translation from 239 to 1444
> RE53469.hyp MFRSNLEGSGAAAVGVANPPSLAQSGKIFQLQDNFSAFHARGGLNILGLQ DMYLDTSGANSSATLSPPITPVTPDPSTSAQSTHFPFLADSAATANSLLM QRQYHYHLLLQQQQQLAMAQHQLALAASAAAASASHQQTDEIARSLKIFA QVTTGAAENAAGSMQDVMQEFATNGYASDDLGRMSYGSAPPQVQMPPQQQ HQQQQGLHLPLGRNPAQLQTNGGNLMPIPLATHWLNNYREHLNNVWRNMS YIPAAPNTMGLQAQTAATVSTNLGVGMGLGLPVQGEQLRGASNSSNNNNN NNKVYKRYNSKAKEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLR TYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAESFRLAKSSYYKQQMK V*
Translation from 239 to 1444
> RE53469.pep MFRSNLEGSGAAAVGVANPPSLAQSGKIFQLQDNFSAFHARGGLNILGLQ DMYLDTSGANSSATLSPPITPVTPDPSTSAQSTHFPFLADSAATANSLLM QRQYHYHLLLQQQQQLAMAQHQLALAASAAAASASHQQTDEIARSLKIFA QVTTGAAENAAGSMQDVMQEFATNGYASDDLGRMSYGSAPPQVQMPPQQQ HQQQQGLHLPLGRNPAQLQTNGGNLMPIPLATHWLNNYREHLNNVWRNMS YIPAAPNTMGLQAQTAATVSTNLGVGMGLGLPVQGEQLRGASNSSNNNNN NNKVYKRYNSKAKEISRHCVFCENNNEPEAVINSHSVRDNFNRVLCPKLR TYVCPICGASGDSAHTIKYCPKKPIITMEDAIKAESFRLAKSSYYKQQMK V*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\nos-PA | 390 | GF16053-PA | 1..390 | 1..401 | 1127 | 62.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG23152-PA | 407 | GG23152-PA | 1..407 | 1..401 | 1506 | 81.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH19104-PA | 396 | GH19104-PA | 14..396 | 33..401 | 874 | 54.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
nos-PA | 401 | CG5637-PA | 1..401 | 1..401 | 2086 | 100 | Plus |
nos-PB | 382 | CG5637-PB | 1..382 | 1..401 | 1962 | 95.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI23557-PA | 373 | GI23557-PA | 15..373 | 33..401 | 805 | 53.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL23824-PA | 501 | GL23824-PA | 13..201 | 94..289 | 318 | 44.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19020-PB | 413 | GA19020-PB | 1..413 | 1..401 | 923 | 51.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\nos-PA | 404 | GM26825-PA | 1..404 | 1..401 | 1655 | 91.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\nos-PA | 385 | GD19274-PA | 1..385 | 1..401 | 1548 | 87.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\nos-PA | 380 | GJ23536-PA | 15..380 | 33..401 | 777 | 52.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK14056-PA | 407 | GK14056-PA | 1..387 | 1..401 | 875 | 53.6 | Plus |