BDGP Sequence Production Resources |
Search the DGRC for RE53486
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 534 |
Well: | 86 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Sap30-RA |
Protein status: | RE53486.pep: gold |
Preliminary Size: | 707 |
Sequenced Size: | 1681 |
Gene | Date | Evidence |
---|---|---|
CG4756 | 2001-12-14 | Blastp of sequenced clone |
CG4756 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4756 | 2003-01-01 | Sim4 clustering to Release 3 |
CG4756 | 2008-04-29 | Release 5.5 accounting |
CG4756 | 2008-08-15 | Release 5.9 accounting |
CG4756 | 2008-12-18 | 5.12 accounting |
1681 bp (1681 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071452
> RE53486.complete GGTTTGGTCACATCGCGCTGTCGAAAGAAAATTTTTTTCTTGCAAAGAGA AACAAAGCAAAGCAATAGTCGAAAGTGAGAAAGACGAAAGAGGAGACAAA GGAGCGAAACGGAGAAAATCAGAGAAGCAGCAAGCAGAGCAGGAAGGGGG ATTGGATAGGAACTCGAAAGCAATCGGCCAGGATCGGGAACAGGATGAAC AACGGATTCAGCACCGGCGAGGAGGACAGTCGCGGGCACACGGACCAAAC GTGCTGCCTAATCGACGACATGGAGCGGTGTCGCAACCAGGCTGGCTACG CCAGCTACTCCAAGCGCATCCAGAAGACGGTGGCCCAAAAGCGGCTCAAG CTCAGCAGCGATCCGGCCGCGCAGCACATTTACATCTGTGACCACCACAA GGAGCGCATCCAGTCGGTGCGCACCAAGCGTCGGCGCAAGGACAGCGAGG ACGACAGCAACGAGACGGACACGGACCTGCACGAGTTCCCCGATCTCTAC CAGCTGGGCGTGAGCACGCTGCGACGCTACAAGCGCCACTTCAAGGTCCA AACGAGGCAGGGCATGAAGCGGGCGCAGCTGGCGGATACAATTATGAAAC ACTTCAAGACAATACCTATCAAGGAGAAGGAGATCATCACATTCTTCGTG TACATGGTGAAGATGGGCTCGAATAAGCTGGACCAGAAGAACGGCCTTGG CAACGACACCACCTGAAGGCGCGTCGGCGGGCGGAGGGAGGAGGAGGACG CCGACGACGTCTACTCCTTTTAACGCTGGCCAACTGCCGATCAAAAGAAA TTAACAACCAAACTTCTCACATTGTTGCTGCATTTGCTGGACGTCGGCAT TGTTGACCAGAATAGGGATGAACGAGAATATTGATAGTGCAATGGCTCAT CCTCATCCGTGTGACCCCCAAGAAACCCAATCCTATACCCATAAGCCACC ACTGCCCAAACCCTTAAGCCTTTCCCCCGACTCCCCGGAACACAAGTAAT ATGCGAAAAGTAAAACAGCAATGAAAGAACGTAAGGAAGAAGGCAACTGG TGCTCCCACGAAAAACAAAACAAACAAAAATTAAAAATAAATAAACTAGT ATGTTGCGAAAGTGAGTCTAATATTAAAAAAGAAATTTACAAAAACTATT TGTAGCCTTGGTCCGTTGTTAATAGCTCTTTATACACGCACTACATTAAA TAAACTATGTAAATTTACAAGAGAATTAACAGAAAACACAACACACTCAA TCAAATAGCAATTCGTATTCTTAGGCTTAAAGACATGTTTATTTGATCGT TTGTATTATACATCATGTTAAGTGAAGTGGGGCTCTGGCTAGACATCAGT TAGTAGTAACCAGCTACTTTAAGCGAATCAAAACACAATTAGACTTCAAT GTGAAAGCAAATTGAATCCGGAAGCCAATACCAATTATCGCTACAAACAG AGAAATAACGAACGAAATAATTTGCAATATTTAAACTAAAACATCGTGTC GTTTGCCCCGGCGGTTTGGAGATATATTTAGAGCTCTAGTTTAAGCCTAA CTTAGACGAACATCGGTTCCACAAATCAATTGGAATTACGCATTAAACGA TTTATGTTAAAGCCTAGACTGATTTTAGCCATACATATAAGCCTAAATAA AACTTAATAGAAAGCAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sap30-RA | 1740 | Sap30-RA | 67..1731 | 2..1666 | 8295 | 99.8 | Plus |
Sap30.a | 1690 | Sap30.a | 615..1690 | 588..1663 | 5350 | 99.8 | Plus |
Sap30.a | 1690 | Sap30.a | 2..587 | 2..587 | 2930 | 100 | Plus |
Rrp45-RA | 1628 | Rrp45-RA | 1388..1628 | 1666..1426 | 1205 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chrX | 16677390..16677976 | 1..587 | 99 | -> | Plus |
chrX | 16678201..16679278 | 588..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4756-RA | 1..522 | 195..716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 1..522 | 195..716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 1..522 | 195..716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4756-RA | 1..522 | 195..716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 1..522 | 195..716 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4756-RA | 2..1663 | 2..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 2..1663 | 2..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 2..1665 | 2..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG4756-RA | 2..1663 | 2..1663 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Sap30-RA | 5..1669 | 1..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16787756..16788342 | 1..587 | 99 | -> | Plus |
X | 16788567..16789644 | 588..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16787756..16788342 | 1..587 | 99 | -> | Plus |
X | 16788567..16789644 | 588..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16787756..16788342 | 1..587 | 99 | -> | Plus |
X | 16788567..16789644 | 588..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_X | 16681789..16682375 | 1..587 | 99 | -> | Plus |
arm_X | 16682600..16683677 | 588..1665 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
X | 16795854..16796440 | 1..587 | 99 | -> | Plus |
X | 16796665..16797742 | 588..1665 | 99 | Plus |
Translation from 194 to 715
> RE53486.pep MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF FVYMVKMGSNKLDQKNGLGNDTT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF22381-PA | 173 | GF22381-PA | 1..173 | 1..173 | 925 | 98.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19078-PA | 173 | GG19078-PA | 1..173 | 1..173 | 931 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH24080-PA | 174 | GH24080-PA | 1..174 | 1..173 | 881 | 94.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Sap30-PB | 173 | CG4756-PB | 1..173 | 1..173 | 913 | 100 | Plus |
Sap30-PA | 173 | CG4756-PA | 1..173 | 1..173 | 913 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI15444-PA | 175 | GI15444-PA | 1..175 | 1..173 | 852 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL26763-PA | 161 | GL26763-PA | 1..161 | 1..173 | 821 | 89.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18408-PA | 173 | GA18408-PA | 1..173 | 1..173 | 909 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM13466-PA | 173 | GM13466-PA | 1..173 | 1..173 | 931 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD17307-PA | 65 | GD17307-PA | 1..49 | 1..49 | 268 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ18815-PA | 174 | GJ18815-PA | 1..174 | 1..173 | 897 | 97.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK18357-PA | 173 | GK18357-PA | 1..173 | 1..173 | 820 | 89.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE17624-PA | 173 | GE17624-PA | 1..173 | 1..173 | 906 | 97.1 | Plus |
Translation from 194 to 715
> RE53486.hyp MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF FVYMVKMGSNKLDQKNGLGNDTT*