Clone RE53486 Report

Search the DGRC for RE53486

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:534
Well:86
Vector:pFlc-1
Associated Gene/TranscriptSap30-RA
Protein status:RE53486.pep: gold
Preliminary Size:707
Sequenced Size:1681

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG4756 2001-12-14 Blastp of sequenced clone
CG4756 2002-01-01 Sim4 clustering to Release 2
CG4756 2003-01-01 Sim4 clustering to Release 3
CG4756 2008-04-29 Release 5.5 accounting
CG4756 2008-08-15 Release 5.9 accounting
CG4756 2008-12-18 5.12 accounting

Clone Sequence Records

RE53486.complete Sequence

1681 bp (1681 high quality bases) assembled on 2001-12-14

GenBank Submission: AY071452

> RE53486.complete
GGTTTGGTCACATCGCGCTGTCGAAAGAAAATTTTTTTCTTGCAAAGAGA
AACAAAGCAAAGCAATAGTCGAAAGTGAGAAAGACGAAAGAGGAGACAAA
GGAGCGAAACGGAGAAAATCAGAGAAGCAGCAAGCAGAGCAGGAAGGGGG
ATTGGATAGGAACTCGAAAGCAATCGGCCAGGATCGGGAACAGGATGAAC
AACGGATTCAGCACCGGCGAGGAGGACAGTCGCGGGCACACGGACCAAAC
GTGCTGCCTAATCGACGACATGGAGCGGTGTCGCAACCAGGCTGGCTACG
CCAGCTACTCCAAGCGCATCCAGAAGACGGTGGCCCAAAAGCGGCTCAAG
CTCAGCAGCGATCCGGCCGCGCAGCACATTTACATCTGTGACCACCACAA
GGAGCGCATCCAGTCGGTGCGCACCAAGCGTCGGCGCAAGGACAGCGAGG
ACGACAGCAACGAGACGGACACGGACCTGCACGAGTTCCCCGATCTCTAC
CAGCTGGGCGTGAGCACGCTGCGACGCTACAAGCGCCACTTCAAGGTCCA
AACGAGGCAGGGCATGAAGCGGGCGCAGCTGGCGGATACAATTATGAAAC
ACTTCAAGACAATACCTATCAAGGAGAAGGAGATCATCACATTCTTCGTG
TACATGGTGAAGATGGGCTCGAATAAGCTGGACCAGAAGAACGGCCTTGG
CAACGACACCACCTGAAGGCGCGTCGGCGGGCGGAGGGAGGAGGAGGACG
CCGACGACGTCTACTCCTTTTAACGCTGGCCAACTGCCGATCAAAAGAAA
TTAACAACCAAACTTCTCACATTGTTGCTGCATTTGCTGGACGTCGGCAT
TGTTGACCAGAATAGGGATGAACGAGAATATTGATAGTGCAATGGCTCAT
CCTCATCCGTGTGACCCCCAAGAAACCCAATCCTATACCCATAAGCCACC
ACTGCCCAAACCCTTAAGCCTTTCCCCCGACTCCCCGGAACACAAGTAAT
ATGCGAAAAGTAAAACAGCAATGAAAGAACGTAAGGAAGAAGGCAACTGG
TGCTCCCACGAAAAACAAAACAAACAAAAATTAAAAATAAATAAACTAGT
ATGTTGCGAAAGTGAGTCTAATATTAAAAAAGAAATTTACAAAAACTATT
TGTAGCCTTGGTCCGTTGTTAATAGCTCTTTATACACGCACTACATTAAA
TAAACTATGTAAATTTACAAGAGAATTAACAGAAAACACAACACACTCAA
TCAAATAGCAATTCGTATTCTTAGGCTTAAAGACATGTTTATTTGATCGT
TTGTATTATACATCATGTTAAGTGAAGTGGGGCTCTGGCTAGACATCAGT
TAGTAGTAACCAGCTACTTTAAGCGAATCAAAACACAATTAGACTTCAAT
GTGAAAGCAAATTGAATCCGGAAGCCAATACCAATTATCGCTACAAACAG
AGAAATAACGAACGAAATAATTTGCAATATTTAAACTAAAACATCGTGTC
GTTTGCCCCGGCGGTTTGGAGATATATTTAGAGCTCTAGTTTAAGCCTAA
CTTAGACGAACATCGGTTCCACAAATCAATTGGAATTACGCATTAAACGA
TTTATGTTAAAGCCTAGACTGATTTTAGCCATACATATAAGCCTAAATAA
AACTTAATAGAAAGCAAAAAAAAAAAAAAAA

RE53486.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:43:07
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-RA 1740 Sap30-RA 67..1731 2..1666 8295 99.8 Plus
Sap30.a 1690 Sap30.a 615..1690 588..1663 5350 99.8 Plus
Sap30.a 1690 Sap30.a 2..587 2..587 2930 100 Plus
Rrp45-RA 1628 Rrp45-RA 1388..1628 1666..1426 1205 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 07:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
chrX 22417052 chrX 16678201..16679278 588..1665 5345 99.7 Plus
chrX 22417052 chrX 16677391..16677976 2..587 2930 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:22 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 07:39:08
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16788567..16789645 588..1666 5365 99.8 Plus
X 23542271 X 16787757..16788342 2..587 2930 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:10:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23527363 X 16796665..16797743 588..1666 5365 99.8 Plus
X 23527363 X 16795855..16796440 2..587 2930 100 Plus
Blast to na_te.dros performed on 2019-03-16 07:39:08 has no hits.

RE53486.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 07:40:12 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
chrX 16677390..16677976 1..587 99 -> Plus
chrX 16678201..16679278 588..1665 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:40 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 1..522 195..716 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 19:09:08 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 1..522 195..716 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 07:33:52 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 1..522 195..716 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:33:22 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 1..522 195..716 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:38:57 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 1..522 195..716 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:38:23 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 2..1663 2..1663 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 19:09:08 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 2..1663 2..1663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:52 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 2..1665 2..1665 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:33:22 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
CG4756-RA 2..1663 2..1663 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:38:57 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
Sap30-RA 5..1669 1..1665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:12 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
X 16787756..16788342 1..587 99 -> Plus
X 16788567..16789644 588..1665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:12 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
X 16787756..16788342 1..587 99 -> Plus
X 16788567..16789644 588..1665 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 07:40:12 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
X 16787756..16788342 1..587 99 -> Plus
X 16788567..16789644 588..1665 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:52 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16681789..16682375 1..587 99 -> Plus
arm_X 16682600..16683677 588..1665 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 16:10:26 Download gff for RE53486.complete
Subject Subject Range Query Range Percent Splice Strand
X 16795854..16796440 1..587 99 -> Plus
X 16796665..16797742 588..1665 99   Plus

RE53486.pep Sequence

Translation from 194 to 715

> RE53486.pep
MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR
LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD
LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF
FVYMVKMGSNKLDQKNGLGNDTT*

RE53486.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 21:07:32
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF22381-PA 173 GF22381-PA 1..173 1..173 925 98.8 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 21:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG19078-PA 173 GG19078-PA 1..173 1..173 931 100 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 21:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH24080-PA 174 GH24080-PA 1..174 1..173 881 94.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:26:31
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-PB 173 CG4756-PB 1..173 1..173 913 100 Plus
Sap30-PA 173 CG4756-PA 1..173 1..173 913 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 21:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI15444-PA 175 GI15444-PA 1..175 1..173 852 92.6 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 21:07:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL26763-PA 161 GL26763-PA 1..161 1..173 821 89.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 21:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18408-PA 173 GA18408-PA 1..173 1..173 909 96.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 21:07:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM13466-PA 173 GM13466-PA 1..173 1..173 931 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 21:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD17307-PA 65 GD17307-PA 1..49 1..49 268 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 21:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ18815-PA 174 GJ18815-PA 1..174 1..173 897 97.1 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 21:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK18357-PA 173 GK18357-PA 1..173 1..173 820 89.7 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 21:07:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE17624-PA 173 GE17624-PA 1..173 1..173 906 97.1 Plus

RE53486.hyp Sequence

Translation from 194 to 715

> RE53486.hyp
MNNGFSTGEEDSRGHTDQTCCLIDDMERCRNQAGYASYSKRIQKTVAQKR
LKLSSDPAAQHIYICDHHKERIQSVRTKRRRKDSEDDSNETDTDLHEFPD
LYQLGVSTLRRYKRHFKVQTRQGMKRAQLADTIMKHFKTIPIKEKEIITF
FVYMVKMGSNKLDQKNGLGNDTT*

RE53486.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:01:25
Subject Length Description Subject Range Query Range Score Percent Strand
Sap30-PB 173 CG4756-PB 1..173 1..173 913 100 Plus
Sap30-PA 173 CG4756-PA 1..173 1..173 913 100 Plus