Clone RE53512 Report

Search the DGRC for RE53512

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:535
Well:12
Vector:pFlc-1
Associated Gene/Transcriptjp-RC
Protein status:RE53512.pep: gold
Sequenced Size:2193

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG13115 2002-01-01 Sim4 clustering to Release 2
CG4405 2004-07-15 Blastp of sequenced clone
jp 2008-04-29 Release 5.5 accounting
jp 2008-08-15 Release 5.9 accounting
jp 2008-12-18 5.12 accounting

Clone Sequence Records

RE53512.complete Sequence

2193 bp (2193 high quality bases) assembled on 2004-07-15

GenBank Submission: BT015212

> RE53512.complete
AGTAGCAAACGACGCGTCGGCCCCAACGGATTACCAATTGAATTTGTAGA
AAAAACGCTAGCTGACGTCGAGTGGCAATATAATTATATATATATATATA
TATATATTCATTCAGAACAAAAAAAAAAAACACATAGGAATTCTGAAAGC
AATTTTGTGCGAAGAGTCAGCGACAATATCCGTTGTTGTTTTGGCCCCGT
GCCGTCGTGGCGGGTTGTGGCACTATTTTTGGCTTCCCAACGGACGCAGT
GACTCTACGTGTCCGTATATCGACGCTCGGTGTTCAGTAAAGACGGAACG
CCATGTCCAACTCGTTTACAAGTTGGAACCGTCTGTAGAAGAAAGATTAC
ACAAATTGTCCAACGTTATGCAAGCAGCTAATTAGCTGTAGCTTCAGTCA
TAGAACTTTTTCGCCTGAAAGTAGAAAATCAGCGAGCATGGACTGGTATC
CGGAGGAGGATGAGGAGGACCTCATGTTCTCACCGGCTTTGTTGGCCAGA
AGAGCCAGCGAAAGCTGGATCGTTGAGCCCCCCGTCGAGTCGGTGCCCAT
CAATGTGACGCTGCAGCGAAAGAAGTCCATGCCCGATTTCCAGGAACTGC
CGCGAGCCACGGAGGCCATGAGCCGGGAGGAGGTGTCCGCCTTGGGTTCC
GCCCGACGGGAGGCAGTGCGTCGCCAGATCGAGGTCAACGAGCGGCTCAA
GGCAAATCCCTTGCTGTATTTGGTCAGTCCACAGGTTAAGGACTGGTTTG
TGCGCCAGCAGCTGATGCTGCTCGTCCTGATTTTCAACGTGGCGTTGGCG
CTTCTATTTGTCTACATGCTCACCTAGCGCCGGAGGATGCACAGGACGAC
GCGGAACAGGGACGGATTCGGATTGGGTGACTCGGGGCAGCGACTGGCTT
TGAGCCACAGTGCGTTTGGCAGCCACCGATAGTTCGGGATTCGCCGTTGG
ACCTGGGAATTTTATGGTCATATTGGATGGCCCACAACCAGTGTCGTGGT
GAGGGCTAATAAGTTTTTAGCATTTGCAGTGATGAGTTGATATAAAGCAG
AACTTATATAAGTATCTAAAGTACCATAAATGTATATCATATGTTTAACA
TGAGGAAACACGCTAGAGATGGGAAAAAGAAATCGAATTACAAGTCTAGA
CTGCAGCCAAATAATGGATAATTAAATTAACTAAATAGCGCAGAACTGCA
ATGCACAAATCGTAGCAAAACTAAATACATACTTAAATCGCGTGGCTGTG
CAGCCAATCATTTAATTTGTCGAGCCAATTAAACTTTGTATTTGTGGCTA
ACCAGGTGAGCTGGAGGTGAGATCGAATAACTATATGCAAATCAATTTAA
CGAATTTTTCTACACATTTAATGTAAAGATAAAGGCAAAATGAAACAAAA
AGAGAAACAAACAACAACAACTTAACCTAATCAATGTTTAATCATGATAA
ATAAACGCGTAATATATTTAATCTACGGCTACTTAATGTAATACATAATA
CGAAAGCAAAACTAGGCAAATGCAAGGCATCCAAAAACCGAAAACCAAAA
AAACCAAGAAACTTTTCCTATTTGCAATTGAAAATGCATTAGTCAGCAAA
CTTAATCAAAACAAAAAGGCAACCGAATAATACAAGTACTCATATTTATA
TATTTAAAGTGTAACAATGCGACACATATATTTGTATAATTAGCAAAATT
TTGTGGGACCGAAAACAGCACCAACAACTAAAGGAGCAACTGCAATGTAT
CTACAAGATATCAGGTATCTTGGGCTCTGTTTTTGGTTTACCAGTTGAAC
ATTTTCGAAACGAAATTGAATACGGAAAGGTTTAAGGAGATTTATGGAAT
CCGAAAATTATATTCTTTAAAGCAACGGATCGAGATTGTTAATGAATGAA
GCTGTATATATACATTTTAAAATATCGTATAACTATAACTATATTTTCTT
CTCGATAATTTACGTTTAAATTCATAGCTGGGACGACGTCATTATTTCAA
AGTGTTGCAATTTATCGTTTTTAGTTTCACTTCATTTACAATGTACGAAT
ATGTTCTAAATATTATGGTTTCACTTTTTTATTTGTTATTTTATATGCAA
ACATTATTGAAAATAAATAAAACCGCACATTCGCATCTTTGCAAGTGTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

RE53512.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 17:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
jp-RC 2213 jp-RC 1..2149 1..2149 10685 99.8 Plus
jp.d 2601 jp.d 1..2149 1..2149 10685 99.8 Plus
jp.a 5876 jp.a 3725..5336 538..2149 8030 99.8 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 19:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
chr2L 23010047 chr2L 9547096..9548505 2148..739 6990 99.7 Minus
chr2L 23010047 chr2L 9549317..9549855 539..1 2650 99.4 Minus
chr2L 23010047 chr2L 9549041..9549244 741..538 1020 100 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:24 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 19:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9548257..9549667 2149..739 7025 99.9 Minus
2L 23513712 2L 9550479..9551017 539..1 2665 99.6 Minus
2L 23513712 2L 9550203..9550406 741..538 1020 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 19:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9548257..9549667 2149..739 7025 99.8 Minus
2L 23513712 2L 9550479..9551017 539..1 2665 99.6 Minus
2L 23513712 2L 9550203..9550406 741..538 1020 100 Minus
Blast to na_te.dros performed 2019-03-16 19:21:24
Subject Length Description Subject Range Query Range Score Percent Strand
297 6995 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). 567..760 1480..1678 145 58.3 Plus
Max-element 8556 Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). 1031..1184 1899..2057 143 59 Plus
Bari1 1728 Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). 1369..1483 2137..2022 126 61 Minus
McClintock 6450 McClintock McCLINTOCK 6450bp 1074..1180 2096..1989 122 63.1 Minus
roo 9092 roo DM_ROO 9092bp 8359..8578 2119..1903 121 54 Minus

RE53512.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 19:22:13 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
chr2L 9547096..9548503 741..2148 99 <- Minus
chr2L 9549042..9549242 540..740 100 <- Minus
chr2L 9549317..9549855 1..539 95   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:42 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..390 438..827 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 16:34:10 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..390 438..827 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:27:21 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..390 438..827 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 17:18:04 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..390 438..827 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:18 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..390 438..827 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 19:40:19 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..2148 1..2148 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 16:34:10 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..2148 1..2148 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:27:21 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..2148 1..2148 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 17:18:04 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..2148 1..2148 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:18 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
jp-RC 1..2148 1..2148 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:13 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9548258..9549665 741..2148 99 <- Minus
2L 9550204..9550404 540..740 100 <- Minus
2L 9550479..9551017 1..539 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:13 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9548258..9549665 741..2148 99 <- Minus
2L 9550204..9550404 540..740 100 <- Minus
2L 9550479..9551017 1..539 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 19:22:13 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9548258..9549665 741..2148 99 <- Minus
2L 9550204..9550404 540..740 100 <- Minus
2L 9550479..9551017 1..539 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:27:21 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9548258..9549665 741..2148 99 <- Minus
arm_2L 9550204..9550404 540..740 100 <- Minus
arm_2L 9550479..9551017 1..539 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 13:55:11 Download gff for RE53512.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9548258..9549665 741..2148 99 <- Minus
2L 9550204..9550404 540..740 100 <- Minus
2L 9550479..9551017 1..539 99   Minus

RE53512.hyp Sequence

Translation from 437 to 826

> RE53512.hyp
MDWYPEEDEEDLMFSPALLARRASESWIVEPPVESVPINVTLQRKKSMPD
FQELPRATEAMSREEVSALGSARREAVRRQIEVNERLKANPLLYLVSPQV
KDWFVRQQLMLLVLIFNVALALLFVYMLT*

RE53512.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 14:18:44
Subject Length Description Subject Range Query Range Score Percent Strand
jp-PC 129 CG4405-PC 1..129 1..129 647 100 Plus
jp-PE 1054 CG4405-PE 958..1054 33..129 465 97.9 Plus
jp-PD 1054 CG4405-PD 958..1054 33..129 465 97.9 Plus
jp-PA 1054 CG4405-PA 958..1054 33..129 465 97.9 Plus
jp-PB 1054 CG4405-PB 958..1054 33..129 465 97.9 Plus

RE53512.pep Sequence

Translation from 437 to 826

> RE53512.pep
MDWYPEEDEEDLMFSPALLARRASESWIVEPPVESVPINVTLQRKKSMPD
FQELPRATEAMSREEVSALGSARREAVRRQIEVNERLKANPLLYLVSPQV
KDWFVRQQLMLLVLIFNVALALLFVYMLT*

RE53512.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 19:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF21962-PA 1077 GF21962-PA 983..1077 35..129 475 94.7 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 19:35:20
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG24023-PA 1067 GG24023-PA 971..1067 33..129 481 97.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 19:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH11059-PA 1083 GH11059-PA 989..1083 35..129 385 92.6 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
jp-PC 129 CG4405-PC 1..129 1..129 647 100 Plus
jp-PE 1054 CG4405-PE 958..1054 33..129 465 97.9 Plus
jp-PD 1054 CG4405-PD 958..1054 33..129 465 97.9 Plus
jp-PA 1054 CG4405-PA 958..1054 33..129 465 97.9 Plus
jp-PB 1054 CG4405-PB 958..1054 33..129 465 97.9 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 19:35:21
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17576-PA 1074 GI17576-PA 980..1074 35..129 450 90.5 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 19:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL19220-PA 958 GL19220-PA 864..958 35..129 466 94.7 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 19:35:22
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA18162-PA 1114 GA18162-PA 974..1114 1..129 627 87.9 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM12430-PA 129 GM12430-PA 1..129 1..129 654 100 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 19:35:23
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD22353-PA 129 GD22353-PA 1..129 1..129 654 100 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 19:35:24
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ17918-PA 1129 GJ17918-PA 1001..1129 1..129 625 90.7 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK15576-PA 1087 GK15576-PA 995..1087 37..129 469 96.8 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 19:35:25
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE10489-PA 1075 GE10489-PA 979..1075 33..129 482 97.9 Plus