BDGP Sequence Production Resources |
Search the DGRC for RE53512
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 535 |
Well: | 12 |
Vector: | pFlc-1 |
Associated Gene/Transcript | jp-RC |
Protein status: | RE53512.pep: gold |
Sequenced Size: | 2193 |
Gene | Date | Evidence |
---|---|---|
CG13115 | 2002-01-01 | Sim4 clustering to Release 2 |
CG4405 | 2004-07-15 | Blastp of sequenced clone |
jp | 2008-04-29 | Release 5.5 accounting |
jp | 2008-08-15 | Release 5.9 accounting |
jp | 2008-12-18 | 5.12 accounting |
2193 bp (2193 high quality bases) assembled on 2004-07-15
GenBank Submission: BT015212
> RE53512.complete AGTAGCAAACGACGCGTCGGCCCCAACGGATTACCAATTGAATTTGTAGA AAAAACGCTAGCTGACGTCGAGTGGCAATATAATTATATATATATATATA TATATATTCATTCAGAACAAAAAAAAAAAACACATAGGAATTCTGAAAGC AATTTTGTGCGAAGAGTCAGCGACAATATCCGTTGTTGTTTTGGCCCCGT GCCGTCGTGGCGGGTTGTGGCACTATTTTTGGCTTCCCAACGGACGCAGT GACTCTACGTGTCCGTATATCGACGCTCGGTGTTCAGTAAAGACGGAACG CCATGTCCAACTCGTTTACAAGTTGGAACCGTCTGTAGAAGAAAGATTAC ACAAATTGTCCAACGTTATGCAAGCAGCTAATTAGCTGTAGCTTCAGTCA TAGAACTTTTTCGCCTGAAAGTAGAAAATCAGCGAGCATGGACTGGTATC CGGAGGAGGATGAGGAGGACCTCATGTTCTCACCGGCTTTGTTGGCCAGA AGAGCCAGCGAAAGCTGGATCGTTGAGCCCCCCGTCGAGTCGGTGCCCAT CAATGTGACGCTGCAGCGAAAGAAGTCCATGCCCGATTTCCAGGAACTGC CGCGAGCCACGGAGGCCATGAGCCGGGAGGAGGTGTCCGCCTTGGGTTCC GCCCGACGGGAGGCAGTGCGTCGCCAGATCGAGGTCAACGAGCGGCTCAA GGCAAATCCCTTGCTGTATTTGGTCAGTCCACAGGTTAAGGACTGGTTTG TGCGCCAGCAGCTGATGCTGCTCGTCCTGATTTTCAACGTGGCGTTGGCG CTTCTATTTGTCTACATGCTCACCTAGCGCCGGAGGATGCACAGGACGAC GCGGAACAGGGACGGATTCGGATTGGGTGACTCGGGGCAGCGACTGGCTT TGAGCCACAGTGCGTTTGGCAGCCACCGATAGTTCGGGATTCGCCGTTGG ACCTGGGAATTTTATGGTCATATTGGATGGCCCACAACCAGTGTCGTGGT GAGGGCTAATAAGTTTTTAGCATTTGCAGTGATGAGTTGATATAAAGCAG AACTTATATAAGTATCTAAAGTACCATAAATGTATATCATATGTTTAACA TGAGGAAACACGCTAGAGATGGGAAAAAGAAATCGAATTACAAGTCTAGA CTGCAGCCAAATAATGGATAATTAAATTAACTAAATAGCGCAGAACTGCA ATGCACAAATCGTAGCAAAACTAAATACATACTTAAATCGCGTGGCTGTG CAGCCAATCATTTAATTTGTCGAGCCAATTAAACTTTGTATTTGTGGCTA ACCAGGTGAGCTGGAGGTGAGATCGAATAACTATATGCAAATCAATTTAA CGAATTTTTCTACACATTTAATGTAAAGATAAAGGCAAAATGAAACAAAA AGAGAAACAAACAACAACAACTTAACCTAATCAATGTTTAATCATGATAA ATAAACGCGTAATATATTTAATCTACGGCTACTTAATGTAATACATAATA CGAAAGCAAAACTAGGCAAATGCAAGGCATCCAAAAACCGAAAACCAAAA AAACCAAGAAACTTTTCCTATTTGCAATTGAAAATGCATTAGTCAGCAAA CTTAATCAAAACAAAAAGGCAACCGAATAATACAAGTACTCATATTTATA TATTTAAAGTGTAACAATGCGACACATATATTTGTATAATTAGCAAAATT TTGTGGGACCGAAAACAGCACCAACAACTAAAGGAGCAACTGCAATGTAT CTACAAGATATCAGGTATCTTGGGCTCTGTTTTTGGTTTACCAGTTGAAC ATTTTCGAAACGAAATTGAATACGGAAAGGTTTAAGGAGATTTATGGAAT CCGAAAATTATATTCTTTAAAGCAACGGATCGAGATTGTTAATGAATGAA GCTGTATATATACATTTTAAAATATCGTATAACTATAACTATATTTTCTT CTCGATAATTTACGTTTAAATTCATAGCTGGGACGACGTCATTATTTCAA AGTGTTGCAATTTATCGTTTTTAGTTTCACTTCATTTACAATGTACGAAT ATGTTCTAAATATTATGGTTTCACTTTTTTATTTGTTATTTTATATGCAA ACATTATTGAAAATAAATAAAACCGCACATTCGCATCTTTGCAAGTGTAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2L | 23010047 | chr2L | 9547096..9548505 | 2148..739 | 6990 | 99.7 | Minus |
chr2L | 23010047 | chr2L | 9549317..9549855 | 539..1 | 2650 | 99.4 | Minus |
chr2L | 23010047 | chr2L | 9549041..9549244 | 741..538 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9548257..9549667 | 2149..739 | 7025 | 99.9 | Minus |
2L | 23513712 | 2L | 9550479..9551017 | 539..1 | 2665 | 99.6 | Minus |
2L | 23513712 | 2L | 9550203..9550406 | 741..538 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2L | 23513712 | 2L | 9548257..9549667 | 2149..739 | 7025 | 99.8 | Minus |
2L | 23513712 | 2L | 9550479..9551017 | 539..1 | 2665 | 99.6 | Minus |
2L | 23513712 | 2L | 9550203..9550406 | 741..538 | 1020 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
297 | 6995 | 297 DMIS297 6995bp Derived from X03431 (g8146) (Rel. 36, Last updated, Version 2). | 567..760 | 1480..1678 | 145 | 58.3 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1031..1184 | 1899..2057 | 143 | 59 | Plus |
Bari1 | 1728 | Bari1 DMBARI1 1728bp AKA(S55767) Derived from X67681 (g7640) (Rel. 36, Last updated, Version 6). | 1369..1483 | 2137..2022 | 126 | 61 | Minus |
McClintock | 6450 | McClintock McCLINTOCK 6450bp | 1074..1180 | 2096..1989 | 122 | 63.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 8359..8578 | 2119..1903 | 121 | 54 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2L | 9547096..9548503 | 741..2148 | 99 | <- | Minus |
chr2L | 9549042..9549242 | 540..740 | 100 | <- | Minus |
chr2L | 9549317..9549855 | 1..539 | 95 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..390 | 438..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..390 | 438..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..390 | 438..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..390 | 438..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..390 | 438..827 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..2148 | 1..2148 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..2148 | 1..2148 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..2148 | 1..2148 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..2148 | 1..2148 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
jp-RC | 1..2148 | 1..2148 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9548258..9549665 | 741..2148 | 99 | <- | Minus |
2L | 9550204..9550404 | 540..740 | 100 | <- | Minus |
2L | 9550479..9551017 | 1..539 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9548258..9549665 | 741..2148 | 99 | <- | Minus |
2L | 9550204..9550404 | 540..740 | 100 | <- | Minus |
2L | 9550479..9551017 | 1..539 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9548258..9549665 | 741..2148 | 99 | <- | Minus |
2L | 9550204..9550404 | 540..740 | 100 | <- | Minus |
2L | 9550479..9551017 | 1..539 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2L | 9548258..9549665 | 741..2148 | 99 | <- | Minus |
arm_2L | 9550204..9550404 | 540..740 | 100 | <- | Minus |
arm_2L | 9550479..9551017 | 1..539 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2L | 9548258..9549665 | 741..2148 | 99 | <- | Minus |
2L | 9550204..9550404 | 540..740 | 100 | <- | Minus |
2L | 9550479..9551017 | 1..539 | 99 | Minus |
Translation from 437 to 826
> RE53512.hyp MDWYPEEDEEDLMFSPALLARRASESWIVEPPVESVPINVTLQRKKSMPD FQELPRATEAMSREEVSALGSARREAVRRQIEVNERLKANPLLYLVSPQV KDWFVRQQLMLLVLIFNVALALLFVYMLT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
jp-PC | 129 | CG4405-PC | 1..129 | 1..129 | 647 | 100 | Plus |
jp-PE | 1054 | CG4405-PE | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PD | 1054 | CG4405-PD | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PA | 1054 | CG4405-PA | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PB | 1054 | CG4405-PB | 958..1054 | 33..129 | 465 | 97.9 | Plus |
Translation from 437 to 826
> RE53512.pep MDWYPEEDEEDLMFSPALLARRASESWIVEPPVESVPINVTLQRKKSMPD FQELPRATEAMSREEVSALGSARREAVRRQIEVNERLKANPLLYLVSPQV KDWFVRQQLMLLVLIFNVALALLFVYMLT*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF21962-PA | 1077 | GF21962-PA | 983..1077 | 35..129 | 475 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG24023-PA | 1067 | GG24023-PA | 971..1067 | 33..129 | 481 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH11059-PA | 1083 | GH11059-PA | 989..1083 | 35..129 | 385 | 92.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
jp-PC | 129 | CG4405-PC | 1..129 | 1..129 | 647 | 100 | Plus |
jp-PE | 1054 | CG4405-PE | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PD | 1054 | CG4405-PD | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PA | 1054 | CG4405-PA | 958..1054 | 33..129 | 465 | 97.9 | Plus |
jp-PB | 1054 | CG4405-PB | 958..1054 | 33..129 | 465 | 97.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17576-PA | 1074 | GI17576-PA | 980..1074 | 35..129 | 450 | 90.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL19220-PA | 958 | GL19220-PA | 864..958 | 35..129 | 466 | 94.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA18162-PA | 1114 | GA18162-PA | 974..1114 | 1..129 | 627 | 87.9 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM12430-PA | 129 | GM12430-PA | 1..129 | 1..129 | 654 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD22353-PA | 129 | GD22353-PA | 1..129 | 1..129 | 654 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ17918-PA | 1129 | GJ17918-PA | 1001..1129 | 1..129 | 625 | 90.7 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK15576-PA | 1087 | GK15576-PA | 995..1087 | 37..129 | 469 | 96.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE10489-PA | 1075 | GE10489-PA | 979..1075 | 33..129 | 482 | 97.9 | Plus |