Clone RE53636 Report

Search the DGRC for RE53636

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:536
Well:36
Vector:pFlc-1
Associated Gene/TranscriptCG1142-RA
Protein status:RE53636.pep: gold
Preliminary Size:1536
Sequenced Size:920

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG1142 2001-12-17 Blastp of sequenced clone
CG1142 2002-01-01 Sim4 clustering to Release 2
CG1142 2003-01-01 Sim4 clustering to Release 3
CG1142 2008-04-29 Release 5.5 accounting
CG1142 2008-08-15 Release 5.9 accounting
CG1142 2008-12-18 5.12 accounting

Clone Sequence Records

RE53636.complete Sequence

920 bp (920 high quality bases) assembled on 2001-12-17

GenBank Submission: AY071453

> RE53636.complete
GGTTGTATGTTATAAACAAGCGTGGTTGCCGCACAAAATGGATTCTATTT
TTCTGGTAGACACAACAGGACGCCAGGAATTCAATGGCGAGCAGCAGCAA
AAGAAGATTGTGTACAACAAAGAGCTGCTCCTGACAGAAAGTGACGCGCA
CAGCGAGGAGGACGAGGAACAAAATGAGGGCGCAGTGGAGCTCTTTGGCC
TAAAGTTGAACTCCAAGGAAGTGCTCGATGTCGTGAATTCCCTGCCTGAC
CGAAAGAAGCCGGTATCCAAGGTTGCCAAGCAGCTGGAGGACCTCTGCGA
AAAGGTCGAGAGTGCAGTGGAGAACTCCAGCAAACCGAAAGTAGTGCCCC
GGAAGCGGGTAACAGAACTGAACCACGATGCTCCGCATCTGGACCTGCGG
CAGGAAAACCTGGAAAGTAATATGAAGAGGACGAAACAGGCCTTGAATCC
AGGACTAGAACAGGCGCATGCACTGCCCACCGTGGGAAAGAGGCAGCAAC
CCATCATCAACAGAGCTGAACGCTCAAAGACCAAGGGCAAGGGATGGTTT
AATCTGCCCGCCACAGAGATCACCGACGAGATGCGAAACGAACTGAAAAT
AGTTCAGATGCGATCGGTTCTGAACCCTAAGCAATTCTACAAGAAGAACG
ACCTTAAGAGTCTGCCCAAATTTTTCCAAATCGGTACTGTGCTACCTTCG
CATTTGGATCACTACCAAGAAAAGAAGTCCAAGAAGAAGCAGTCGCTGGT
AAATGAGTTGTTAGAAGACGAGAGCTTCCAGAAGTTCAACAAGAGGAAGT
TCAACGAGGTTATTAAGCGCACAGACAAATACGCCTATCGGAAAAACTTG
AAGAAAATGAAAAAACTTAAGAAAAATAAATAAATATAAAATATTTTAAA
ACCTGAAAAAAAAAAAAAAA

RE53636.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-RA 1057 CG1142-RA 152..1053 3..904 4510 100 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 20:19:21
Subject Length Description Subject Range Query Range Score Percent Strand
chr3R 27901430 chr3R 3299326..3299838 515..3 2550 99.8 Minus
chr3R 27901430 chr3R 3298524..3298913 904..515 1935 99.7 Minus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:28 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 20:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 7473260..7473772 515..3 2565 100 Minus
3R 32079331 3R 7472458..7472847 904..515 1950 100 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 21:03:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 31820162 3R 7214091..7214603 515..3 2565 100 Minus
3R 31820162 3R 7213289..7213678 904..515 1950 100 Minus
Blast to na_te.dros performed on 2019-03-16 20:19:20 has no hits.

RE53636.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 20:20:19 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
chr3R 3298561..3298913 515..868 99 <- Minus
chr3R 3299327..3299840 1..514 99   Minus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:46 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 38..883 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:57:52 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 38..883 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 17:53:18 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 38..883 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:22:35 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 38..883 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:58:29 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..846 38..883 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:22:36 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..904 2..905 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:57:52 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 4..907 1..904 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:53:18 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 8..911 1..904 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:22:36 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 1..904 2..905 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:58:29 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
CG1142-RA 8..911 1..904 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:19 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7472457..7472847 515..905 99 <- Minus
3R 7473261..7473774 1..514 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:19 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7472457..7472847 515..905 99 <- Minus
3R 7473261..7473774 1..514 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 20:20:19 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7472457..7472847 515..905 99 <- Minus
3R 7473261..7473774 1..514 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:53:18 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 3298179..3298569 515..905 99 <- Minus
arm_3R 3298983..3299496 1..514 99   Minus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:57:35 Download gff for RE53636.complete
Subject Subject Range Query Range Percent Splice Strand
3R 7213288..7213678 515..905 99 <- Minus
3R 7214092..7214605 1..514 99   Minus

RE53636.hyp Sequence

Translation from 0 to 882

> RE53636.hyp
FVCYKQAWLPHKMDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAH
SEEDEEQNEGAVELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCE
KVESAVENSSKPKVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNP
GLEQAHALPTVGKRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKI
VQMRSVLNPKQFYKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLV
NELLEDESFQKFNKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*

RE53636.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-PA 281 CG1142-PA 1..281 13..293 1435 100 Plus

RE53636.pep Sequence

Translation from 37 to 882

> RE53636.pep
MDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAHSEEDEEQNEGAV
ELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCEKVESAVENSSKP
KVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNPGLEQAHALPTVG
KRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKIVQMRSVLNPKQF
YKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLVNELLEDESFQKF
NKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*

RE53636.pep Blast Records

Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG25204-PA 279 GG25204-PA 1..266 1..268 1233 90.3 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH13291-PA 289 GH13291-PA 1..274 1..268 621 51.8 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 10:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG1142-PA 281 CG1142-PA 1..281 1..281 1435 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI17483-PA 287 GI17483-PA 1..274 1..268 678 55.4 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL21176-PA 285 GL21176-PA 1..272 1..268 816 61.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:04:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA28756-PA 285 GA28756-PA 1..272 1..268 816 61.3 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM10482-PA 282 GM10482-PA 1..268 1..268 1306 94.4 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD19482-PA 282 GD19482-PA 1..268 1..268 1306 94.4 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ15035-PA 286 GJ15035-PA 1..273 1..268 657 54.2 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK23709-PA 292 GK23709-PA 1..278 1..268 731 57 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE25792-PA 279 GE25792-PA 1..266 1..268 1220 89.6 Plus