BDGP Sequence Production Resources |
Search the DGRC for RE53636
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 536 |
Well: | 36 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG1142-RA |
Protein status: | RE53636.pep: gold |
Preliminary Size: | 1536 |
Sequenced Size: | 920 |
Gene | Date | Evidence |
---|---|---|
CG1142 | 2001-12-17 | Blastp of sequenced clone |
CG1142 | 2002-01-01 | Sim4 clustering to Release 2 |
CG1142 | 2003-01-01 | Sim4 clustering to Release 3 |
CG1142 | 2008-04-29 | Release 5.5 accounting |
CG1142 | 2008-08-15 | Release 5.9 accounting |
CG1142 | 2008-12-18 | 5.12 accounting |
920 bp (920 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071453
> RE53636.complete GGTTGTATGTTATAAACAAGCGTGGTTGCCGCACAAAATGGATTCTATTT TTCTGGTAGACACAACAGGACGCCAGGAATTCAATGGCGAGCAGCAGCAA AAGAAGATTGTGTACAACAAAGAGCTGCTCCTGACAGAAAGTGACGCGCA CAGCGAGGAGGACGAGGAACAAAATGAGGGCGCAGTGGAGCTCTTTGGCC TAAAGTTGAACTCCAAGGAAGTGCTCGATGTCGTGAATTCCCTGCCTGAC CGAAAGAAGCCGGTATCCAAGGTTGCCAAGCAGCTGGAGGACCTCTGCGA AAAGGTCGAGAGTGCAGTGGAGAACTCCAGCAAACCGAAAGTAGTGCCCC GGAAGCGGGTAACAGAACTGAACCACGATGCTCCGCATCTGGACCTGCGG CAGGAAAACCTGGAAAGTAATATGAAGAGGACGAAACAGGCCTTGAATCC AGGACTAGAACAGGCGCATGCACTGCCCACCGTGGGAAAGAGGCAGCAAC CCATCATCAACAGAGCTGAACGCTCAAAGACCAAGGGCAAGGGATGGTTT AATCTGCCCGCCACAGAGATCACCGACGAGATGCGAAACGAACTGAAAAT AGTTCAGATGCGATCGGTTCTGAACCCTAAGCAATTCTACAAGAAGAACG ACCTTAAGAGTCTGCCCAAATTTTTCCAAATCGGTACTGTGCTACCTTCG CATTTGGATCACTACCAAGAAAAGAAGTCCAAGAAGAAGCAGTCGCTGGT AAATGAGTTGTTAGAAGACGAGAGCTTCCAGAAGTTCAACAAGAGGAAGT TCAACGAGGTTATTAAGCGCACAGACAAATACGCCTATCGGAAAAACTTG AAGAAAATGAAAAAACTTAAGAAAAATAAATAAATATAAAATATTTTAAA ACCTGAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1142-RA | 1057 | CG1142-RA | 152..1053 | 3..904 | 4510 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3R | 3298561..3298913 | 515..868 | 99 | <- | Minus |
chr3R | 3299327..3299840 | 1..514 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..846 | 38..883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..846 | 38..883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..846 | 38..883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..846 | 38..883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..846 | 38..883 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..904 | 2..905 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 4..907 | 1..904 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 8..911 | 1..904 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 1..904 | 2..905 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG1142-RA | 8..911 | 1..904 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7472457..7472847 | 515..905 | 99 | <- | Minus |
3R | 7473261..7473774 | 1..514 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7472457..7472847 | 515..905 | 99 | <- | Minus |
3R | 7473261..7473774 | 1..514 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7472457..7472847 | 515..905 | 99 | <- | Minus |
3R | 7473261..7473774 | 1..514 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3R | 3298179..3298569 | 515..905 | 99 | <- | Minus |
arm_3R | 3298983..3299496 | 1..514 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3R | 7213288..7213678 | 515..905 | 99 | <- | Minus |
3R | 7214092..7214605 | 1..514 | 99 | Minus |
Translation from 0 to 882
> RE53636.hyp FVCYKQAWLPHKMDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAH SEEDEEQNEGAVELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCE KVESAVENSSKPKVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNP GLEQAHALPTVGKRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKI VQMRSVLNPKQFYKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLV NELLEDESFQKFNKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1142-PA | 281 | CG1142-PA | 1..281 | 13..293 | 1435 | 100 | Plus |
Translation from 37 to 882
> RE53636.pep MDSIFLVDTTGRQEFNGEQQQKKIVYNKELLLTESDAHSEEDEEQNEGAV ELFGLKLNSKEVLDVVNSLPDRKKPVSKVAKQLEDLCEKVESAVENSSKP KVVPRKRVTELNHDAPHLDLRQENLESNMKRTKQALNPGLEQAHALPTVG KRQQPIINRAERSKTKGKGWFNLPATEITDEMRNELKIVQMRSVLNPKQF YKKNDLKSLPKFFQIGTVLPSHLDHYQEKKSKKKQSLVNELLEDESFQKF NKRKFNEVIKRTDKYAYRKNLKKMKKLKKNK*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG25204-PA | 279 | GG25204-PA | 1..266 | 1..268 | 1233 | 90.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH13291-PA | 289 | GH13291-PA | 1..274 | 1..268 | 621 | 51.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG1142-PA | 281 | CG1142-PA | 1..281 | 1..281 | 1435 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI17483-PA | 287 | GI17483-PA | 1..274 | 1..268 | 678 | 55.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL21176-PA | 285 | GL21176-PA | 1..272 | 1..268 | 816 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA28756-PA | 285 | GA28756-PA | 1..272 | 1..268 | 816 | 61.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM10482-PA | 282 | GM10482-PA | 1..268 | 1..268 | 1306 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD19482-PA | 282 | GD19482-PA | 1..268 | 1..268 | 1306 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ15035-PA | 286 | GJ15035-PA | 1..273 | 1..268 | 657 | 54.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK23709-PA | 292 | GK23709-PA | 1..278 | 1..268 | 731 | 57 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE25792-PA | 279 | GE25792-PA | 1..266 | 1..268 | 1220 | 89.6 | Plus |