BDGP Sequence Production Resources |
Search the DGRC for RE53796
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 537 |
Well: | 96 |
Vector: | pFlc-1 |
Associated Gene/Transcript | CG5969-RA |
Protein status: | RE53796.pep: gold |
Preliminary Size: | 394 |
Sequenced Size: | 948 |
Gene | Date | Evidence |
---|---|---|
CG5969 | 2001-12-17 | Blastp of sequenced clone |
CG5969 | 2002-01-01 | Sim4 clustering to Release 2 |
CG5969 | 2008-04-29 | Release 5.5 accounting |
CG5969 | 2008-08-15 | Release 5.9 accounting |
CG5969 | 2008-12-18 | 5.12 accounting |
948 bp (948 high quality bases) assembled on 2001-12-17
GenBank Submission: AY071456
> RE53796.complete GTCATATATTTCTGATAACCGAATGGCAGACCAAAGCAAAACTAGAAATT GAGAGAAATTGCTGATTTTTCAATTAAGCTGCATTCTATTTAACTGAAAA GATGTCGACCAAGAACAAGAAAGCCGCCGGAGGCAACGGAGTTGCGCCGA AACAAACCCGCCAGCAGTCGCACGACTCGCAGGACTACAGCTCCTTCAAG ACAGTGCTCTTCTACTGCATGCTTATCGTTTTCCTGCCCGTGCTGACCTT CTTTGTGCTGAAGGGCTTCGTTCTGGACCAGTTCCTCGACATTTCCGAAG TCAAAGTGAACATAGCATCCGCCGTGGGAGCGGTCGTTGCATTGCACATC GCCCTGGGACTCTATATATACAGGGCCTACTTTGGGGCACCCGGTTCCAA GGGCTCCAAAACGGACTAATCCTCATCTACCCCGGACTGTTACCCTATTT CCATTAACTTTAAGTCGGTAGAGCACTCTTGTACATACATACATGCTACA TATATAGATACAATTGTTTACATGCCAGCGAGGGAGGAGAAAGTCGCCTG TAAACCGTGTGTAATCGCTTTTCATTGCATAAGTTTCGATAACAGCGTGG AAAACGTGTTGTGTTGTGTAGTGTTCTGTGTGCATAATTTGTATTAAAAA TATACATGCATAAGTGAAATGCGTCTGCTACTCAGAAATTATTCCCTAAT GGAGGCCGTCAAAAGATTGCTGCCGAGACCGCGCAAAAAAATCTACAATC TAGGCGCTTGCTTCGAACTGGTGGATATTCCTAAGGTTAACTAAAACATA CATTTATTTGTACTCTCTGCTTGAAAGGGGAGTTCTGTATAAAGTATACT GACTTCGGGGATTTTATTATATTGATAAATTAATTTTATGTTTTTGAATT TTATATTATATGTTTTCTTTTTGATTGAAGCACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5969-RA | 933 | CG5969-RA | 1..933 | 1..933 | 4650 | 99.8 | Plus |
nc_13793.a | 452 | nc_13793.a | 45..452 | 529..936 | 2040 | 100 | Plus |
CG5976-RB | 1617 | CG5976-RB | 1..178 | 608..785 | 890 | 100 | Plus |
nc_13793.a | 452 | nc_13793.a | 1..44 | 420..463 | 220 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 990..1054 | 600..662 | 122 | 67.7 | Plus |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 9507..9571 | 600..662 | 122 | 67.7 | Plus |
Max-element | 8556 | Max-element DME487856 8556bp Derived from AJ487856 (Rel. 71, Last updated, Version 1). | 1868..1905 | 776..739 | 109 | 76.3 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 20462809..20462981 | 1..173 | 98 | -> | Plus |
chr3L | 20463044..20463730 | 174..860 | 99 | == | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..318 | 102..419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..318 | 102..419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..318 | 102..419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..318 | 102..419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..318 | 102..419 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..933 | 1..933 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..933 | 1..933 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 15..947 | 1..933 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 1..933 | 1..933 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
CG5969-RA | 15..947 | 1..933 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20473797..20473969 | 1..173 | 99 | -> | Plus |
3L | 20474032..20474791 | 174..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20473797..20473969 | 1..173 | 99 | -> | Plus |
3L | 20474032..20474791 | 174..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20473797..20473969 | 1..173 | 99 | -> | Plus |
3L | 20474032..20474791 | 174..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 20466897..20467069 | 1..173 | 99 | -> | Plus |
arm_3L | 20467132..20467891 | 174..933 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 20467132..20467891 | 174..933 | 100 | Plus | |
3L | 20466897..20467069 | 1..173 | 99 | -> | Plus |
Translation from 101 to 418
> RE53796.pep MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK GSKTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10347-PA | 106 | GF10347-PA | 1..106 | 1..105 | 451 | 83 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG16118-PA | 105 | GG16118-PA | 1..105 | 1..105 | 520 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14552-PA | 106 | GH14552-PA | 1..101 | 1..104 | 324 | 67 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5969-PA | 105 | CG5969-PA | 1..105 | 1..105 | 531 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13399-PA | 105 | GI13399-PA | 1..105 | 1..105 | 335 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL12791-PA | 108 | GL12791-PA | 1..108 | 1..105 | 401 | 75 | Plus |
Dper\GL14676-PA | 111 | GL14676-PA | 1..111 | 1..105 | 332 | 63.1 | Plus |
Dper\GL23044-PA | 203 | GL23044-PA | 117..190 | 21..94 | 159 | 43.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA19267-PA | 108 | GA19267-PA | 1..108 | 1..105 | 400 | 75 | Plus |
Dpse\GA29180-PA | 108 | GA29180-PA | 1..108 | 1..105 | 368 | 69.4 | Plus |
Dpse\GA24728-PA | 108 | GA24728-PA | 1..108 | 1..105 | 368 | 69.4 | Plus |
Dpse\GA23670-PA | 111 | GA23670-PA | 1..111 | 1..105 | 336 | 64 | Plus |
Dpse\GA12554-PA | 203 | GA12554-PA | 117..190 | 21..94 | 159 | 43.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM22297-PA | 105 | GM22297-PA | 1..105 | 1..105 | 532 | 98.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD14890-PA | 105 | GD14890-PA | 1..105 | 1..105 | 537 | 99 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ11524-PA | 107 | GJ11524-PA | 1..107 | 1..105 | 344 | 62.6 | Plus |
Translation from 101 to 418
> RE53796.hyp MSTKNKKAAGGNGVAPKQTRQQSHDSQDYSSFKTVLFYCMLIVFLPVLTF FVLKGFVLDQFLDISEVKVNIASAVGAVVALHIALGLYIYRAYFGAPGSK GSKTD*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
CG5969-PA | 105 | CG5969-PA | 1..105 | 1..105 | 531 | 100 | Plus |