Clone RE53819 Report

Search the DGRC for RE53819

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:538
Well:19
Vector:pFlc-1
Associated Gene/TranscriptCG18179-RA
Protein status:RE53819.pep: gold
Preliminary Size:809
Sequenced Size:882

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG18179 2002-01-01 Sim4 clustering to Release 2
CG18179 2002-05-20 Blastp of sequenced clone
CG18179 2003-01-01 Sim4 clustering to Release 3
CG18179 2008-04-29 Release 5.5 accounting
CG18179 2008-08-15 Release 5.9 accounting
CG18179 2008-12-18 5.12 accounting

Clone Sequence Records

RE53819.complete Sequence

882 bp (882 high quality bases) assembled on 2002-05-20

GenBank Submission: AY118395

> RE53819.complete
AAGTTTCCTCCGAGCCATGAAGCTGTTCCTACTTACACTCTCCGTGGCCC
TAGCCGTGGTCGCCGCCTCCCCAGGCTTCAACCGCACCAGCCTTCTGCCC
CAGGTGACCATTTCCGAGGGTGCCGAGGGCCGCATCGTCAACGGTTACCC
AGCGCCCGAGGGAAAGGCTCCCTACATTGTGGGACTGTTGATCCGCACCG
ATGGAAGCAACAGTGCCGCGGTTGGAGCTGGAACCATCATCGCCAGCGAC
TGGATTCTGACCGCCGCTCACTGTCTGACCACCGACTACGTGGAGATCCA
CTATGGATCCAACTGGGGCTGGAACGGAGCTTTCAGGCAATCTGTCCGCC
GTGACAACTTTATCAGCCATCCAAACTGGCCCGCTGAGGGCGGTCGTGAC
ATCGGTCTGATCCGCACTCCCTCCGTGGGCTTCACCGACTTGATCAACAA
GGTCGCCCTGCCAAGCTTCAGCGAGGAGAGCGACCGCTTCGTGGACACAT
GGTGCGTTGCCTGCGGATGGGGCGGCATGGACAATGGCAACCTGGCCGAC
TGGCTGCAGTGCATGGACGTCCAGATCATCAGCAACAGCGAGTGCGAGCA
GTCCTACGGCACCGTGGCCAGCACTGACATGTGCACGCGCCGCACCGATG
GCAAATCCTCTTGCGGAGGCGACTCTGGTGGTCCACTCGTTACCCATGAC
AACGCTCGGCTAGTGGGAGTGATTACCTTTGGCTCGGTGGACTGCCACAG
CGGTCCTTCCGGCTACACCCGCGTCACCGACTACTTGGGATGGATCCGTG
ACAACACCGGCATCTCCTACTAAACTCTTAATAAATCCTTTGTATTTTTT
TAATAAAATCTTTATATGAAAAAAAAAAAAAA

RE53819.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 18:59:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-RA 868 CG18179-RA 1..868 1..868 4340 100 Plus
CG18180-RA 898 CG18180-RA 101..811 113..823 1695 82.5 Plus
Jon25Biii-RA 817 Jon25Biii-RA 505..663 542..700 180 74.2 Plus
CG18180-RA 898 CG18180-RA 1..72 1..72 165 81.9 Plus
Jon25Biii-RA 817 Jon25Biii-RA 739..792 770..823 165 87 Plus
Jon25Biii-RA 817 Jon25Biii-RA 115..173 125..183 145 83 Plus
Blast to d_melanogaster_OreR.fa performed 2019-03-16 13:42:52
Subject Length Description Subject Range Query Range Score Percent Strand
chr3L 24539361 chr3L 9631159..9632027 1..868 4175 99 Plus
chr3L 24539361 chr3L 9633023..9633724 122..823 1650 82.3 Plus
chr3L 24539361 chr3L 9630371..9630771 398..798 460 74.3 Plus
chr3R 27901430 chr3R 25745398..25745462 759..823 190 86.2 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:35 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-16 13:42:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9639273..9640143 1..871 4355 100 Plus
3L 28110227 3L 9641116..9641826 113..823 1695 82.6 Plus
3L 28110227 3L 9638478..9638878 398..798 430 73.8 Plus
3R 32079331 3R 29922975..29923039 759..823 190 86.2 Plus
3R 32079331 3R 29923790..29923854 823..759 190 86.2 Minus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28103327 3L 9632373..9633243 1..871 4355 100 Plus
3L 28103327 3L 9634216..9634926 113..823 1695 82.5 Plus
3L 28103327 3L 9631680..9631882 500..702 370 78.8 Plus
3R 31820162 3R 29663806..29663870 759..823 190 86.1 Plus
3R 31820162 3R 29664621..29664685 823..759 190 86.1 Minus
2L 23513712 2L 4950101..4950259 700..542 180 74.2 Minus
3L 28103327 3L 9634116..9634187 1..72 165 81.9 Plus
2L 23513712 2L 4949972..4950025 823..770 165 87 Minus
2L 23513712 2L 4950591..4950649 183..125 145 83 Minus
Blast to na_te.dros performed on 2019-03-16 13:42:50 has no hits.

RE53819.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-16 13:43:58 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
chr3L 9631159..9632027 1..868 98   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:22:54 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 17:38:48 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 12:12:45 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 18:30:31 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:18:46 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..807 17..823 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 21:11:48 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 17:38:48 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 12:12:45 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 3..870 1..868 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 18:30:32 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 1..868 1..868 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:46 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
CG18179-RA 3..870 1..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:58 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9639273..9640140 1..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:58 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9639273..9640140 1..868 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-16 13:43:58 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9639273..9640140 1..868 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 12:12:45 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9632373..9633240 1..868 100   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:03:07 Download gff for RE53819.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9632373..9633240 1..868 100   Plus

RE53819.hyp Sequence

Translation from 0 to 822

> RE53819.hyp
SFLRAMKLFLLTLSVALAVVAASPGFNRTSLLPQVTISEGAEGRIVNGYP
APEGKAPYIVGLLIRTDGSNSAAVGAGTIIASDWILTAAHCLTTDYVEIH
YGSNWGWNGAFRQSVRRDNFISHPNWPAEGGRDIGLIRTPSVGFTDLINK
VALPSFSEESDRFVDTWCVACGWGGMDNGNLADWLQCMDVQIISNSECEQ
SYGTVASTDMCTRRTDGKSSCGGDSGGPLVTHDNARLVGVITFGSVDCHS
GPSGYTRVTDYLGWIRDNTGISY*

RE53819.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 13:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-PA 268 CG18179-PA 1..268 6..273 1443 100 Plus
CG18180-PA 264 CG18180-PA 1..264 6..273 1221 83.6 Plus
CG8329-PA 259 CG8329-PA 4..258 7..273 872 62.9 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 6..273 631 49.3 Plus
Jon25Biii-PA 258 CG8871-PA 1..258 6..273 627 48.5 Plus

RE53819.pep Sequence

Translation from 16 to 822

> RE53819.pep
MKLFLLTLSVALAVVAASPGFNRTSLLPQVTISEGAEGRIVNGYPAPEGK
APYIVGLLIRTDGSNSAAVGAGTIIASDWILTAAHCLTTDYVEIHYGSNW
GWNGAFRQSVRRDNFISHPNWPAEGGRDIGLIRTPSVGFTDLINKVALPS
FSEESDRFVDTWCVACGWGGMDNGNLADWLQCMDVQIISNSECEQSYGTV
ASTDMCTRRTDGKSSCGGDSGGPLVTHDNARLVGVITFGSVDCHSGPSGY
TRVTDYLGWIRDNTGISY*

RE53819.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-16 03:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF25148-PA 262 GF25148-PA 1..262 1..268 989 74.3 Plus
Dana\GF25149-PA 262 GF25149-PA 1..262 1..268 988 74.3 Plus
Dana\GF25147-PA 254 GF25147-PA 1..253 1..268 853 62.3 Plus
Dana\GF25146-PA 240 GF25146-PA 6..239 32..268 742 60.7 Plus
Dana\GF25150-PA 148 GF25150-PA 4..148 124..268 657 86.2 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-16 03:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG15396-PA 264 GG15396-PA 21..264 20..268 1114 83.1 Plus
Dere\GG15395-PA 258 GG15395-PA 3..257 1..268 851 62.7 Plus
Dere\GG24336-PA 266 GG24336-PA 34..265 37..268 591 51.5 Plus
Dere\GG24338-PA 258 GG24338-PA 18..258 21..268 575 48.4 Plus
Dere\GG14309-PA 260 GG14309-PA 1..259 1..268 554 46.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-16 03:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH16311-PA 263 GH16311-PA 32..262 40..268 748 63.2 Plus
Dgri\GH16447-PA 265 GH16447-PA 1..264 1..268 633 50.4 Plus
Dgri\GH15026-PA 259 GH15026-PA 1..259 1..268 573 47.1 Plus
Dgri\GH15028-PA 268 GH15028-PA 1..268 1..268 539 45.6 Plus
Dgri\GH14856-PA 260 GH14856-PA 11..260 21..268 520 44 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG18179-PA 268 CG18179-PA 1..268 1..268 1443 100 Plus
CG18180-PA 264 CG18180-PA 1..264 1..268 1221 83.6 Plus
CG8329-PA 259 CG8329-PA 4..258 2..268 872 62.9 Plus
Jon25Bi-PB 266 CG8867-PB 1..265 1..268 631 49.3 Plus
Jon25Biii-PA 258 CG8871-PA 1..258 1..268 627 48.5 Plus
Jon66Cii-PA 262 CG7170-PA 1..261 1..268 622 49.6 Plus
Jon66Ci-PA 260 CG7118-PA 1..259 1..268 599 47.3 Plus
Jon25Bii-PB 276 CG8869-PB 1..276 1..268 569 46.4 Plus
Jon25Bii-PA 276 CG8869-PA 1..276 1..268 569 46.4 Plus
Jon44E-PB 271 CG8579-PB 1..271 1..268 565 44.4 Plus
Jon44E-PA 271 CG8579-PA 1..271 1..268 565 44.4 Plus
Jon99Fii-PA 267 CG2229-PA 1..267 1..268 555 46.7 Plus
Jon99Cii-PA 265 CG31034-PA 1..265 1..268 552 47.1 Plus
Jon99Ciii-PB 265 CG31362-PB 1..265 1..268 552 47.1 Plus
Jon99Ciii-PA 265 CG31362-PA 1..265 1..268 552 47.1 Plus
Jon99Fi-PA 267 CG18030-PA 4..267 3..268 546 45.8 Plus
Jon65Ai-PB 262 CG10475-PB 9..262 12..268 532 43.5 Plus
Jon65Ai-PA 262 CG10475-PA 9..262 12..268 532 43.5 Plus
Jon65Aii-PA 259 CG6580-PA 1..259 1..268 491 42.7 Plus
Jon99Ci-PA 272 CG31039-PA 36..272 35..268 473 41.7 Plus
Jon65Aiii-PA 274 CG6483-PA 8..274 11..268 436 40.4 Plus
CG3088-PA 252 CG3088-PA 22..252 33..268 432 40.5 Plus
Jon65Aiv-PA 271 CG6467-PA 3..271 4..266 412 38.6 Plus
CG10477-PB 272 CG10477-PB 1..272 1..268 399 37.5 Plus
CG10477-PA 272 CG10477-PA 1..272 1..268 399 37.5 Plus
yip7-PA 270 CG6457-PA 1..270 1..266 375 38.1 Plus
CG10472-PA 290 CG10472-PA 9..285 3..266 333 37.3 Plus
sphinx2-PC 253 CG32382-PC 25..253 39..268 331 31.8 Plus
sphinx2-PB 253 CG32382-PB 25..253 39..268 331 31.8 Plus
sphinx1-PB 253 CG32383-PB 6..253 24..268 326 30.2 Plus
Jon74E-PC 271 CG6298-PC 24..270 32..268 306 35.7 Plus
CG11529-PA 287 CG11529-PA 40..260 50..265 302 35.4 Plus
CG11912-PA 271 CG11912-PA 1..267 1..263 291 34.2 Plus
CG6592-PA 438 CG6592-PA 105..364 24..267 280 32.8 Plus
CG7542-PB 270 CG7542-PB 17..260 30..260 277 35 Plus
CG7542-PA 270 CG7542-PA 17..260 30..260 277 35 Plus
CG6462-PA 319 CG6462-PA 76..318 39..267 265 32.8 Plus
CG8952-PA 276 CG8952-PA 35..275 37..267 252 31.4 Plus
MP1-PA 390 CG1102-PA 111..387 24..263 234 27.9 Plus
MP1-PC 399 CG1102-PC 120..396 24..263 234 27.9 Plus
MP1-PE 400 CG1102-PE 121..397 24..263 234 27.9 Plus
CG31265-PA 266 CG31265-PA 1..255 1..261 230 30.8 Plus
Phae1-PB 270 CG16996-PB 33..270 37..267 228 31.7 Plus
Phae1-PA 270 CG16996-PA 33..270 37..267 228 31.7 Plus
CG32808-PA 284 CG32808-PA 23..255 33..260 228 28.9 Plus
CG12256-PA 283 CG12256-PA 7..280 4..262 227 28.5 Plus
CG9676-PA 251 CG9676-PA 25..251 37..266 224 30.7 Plus
CG30025-PA 253 CG30025-PA 1..252 1..263 221 31 Plus
gammaTry-PA 253 CG30028-PA 1..252 1..263 220 31 Plus
deltaTry-PA 253 CG12351-PA 1..252 1..263 220 31 Plus
CG30031-PA 253 CG30031-PA 1..252 1..263 220 31 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-16 03:56:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI13255-PA 267 GI13255-PA 1..267 5..268 805 57.7 Plus
Dmoj\GI13256-PA 268 GI13256-PA 1..267 1..268 799 57.8 Plus
Dmoj\GI13257-PA 265 GI13257-PA 1..264 1..268 606 47.4 Plus
Dmoj\GI16705-PA 258 GI16705-PA 1..257 1..268 600 48.9 Plus
Dmoj\GI16680-PA 259 GI16680-PA 1..258 1..268 590 49.1 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-16 03:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL12711-PA 261 GL12711-PA 20..260 18..268 910 67.3 Plus
Dper\GL12710-PA 260 GL12710-PA 1..259 6..268 900 63.5 Plus
Dper\GL19488-PA 258 GL19488-PA 1..258 1..268 588 47.4 Plus
Dper\GL24701-PA 239 GL24701-PA 6..239 27..268 556 50.4 Plus
Dper\GL26493-PA 265 GL26493-PA 34..265 37..268 553 50.6 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-16 03:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA14830-PA 261 GA14830-PA 20..260 18..268 921 68.5 Plus
Dpse\GA20992-PA 260 GA20992-PA 1..259 1..268 899 63.8 Plus
Dpse\GA21381-PA 258 GA21381-PA 1..258 1..268 588 47.4 Plus
Dpse\GA20115-PA 260 GA20115-PA 1..260 1..268 560 48.2 Plus
Dpse\GA21379-PA 265 GA21379-PA 34..265 37..268 553 50.6 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-16 03:56:38
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM25170-PA 268 GM25170-PA 1..268 1..268 1373 97 Plus
Dsec\GM25169-PA 259 GM25169-PA 4..258 2..268 846 61.8 Plus
Dsec\GM24943-PA 262 GM24943-PA 1..261 1..268 592 48.9 Plus
Dsec\GM25051-PA 260 GM25051-PA 1..259 1..268 559 47.3 Plus
Dsec\GM25171-PA 144 GM25171-PA 21..144 20..148 557 82.2 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-16 03:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD14201-PA 264 GD14201-PA 21..264 20..268 1125 83.9 Plus
Dsim\GD14200-PA 444 GD14200-PA 250..444 74..268 1023 96.9 Plus
Dsim\GD14200-PA 444 GD14200-PA 4..253 2..263 833 63 Plus
Dsim\GD22676-PA 266 GD22676-PA 1..265 1..268 594 47.6 Plus
Dsim\GD10590-PA 271 GD10590-PA 1..271 1..268 531 43.6 Plus
Dsim\GD21522-PA 267 GD21522-PA 1..267 1..268 509 45.3 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-16 03:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ12026-PA 266 GJ12026-PA 35..265 40..268 768 62.8 Plus
Dvir\GJ12443-PA 257 GJ12443-PA 1..257 1..268 590 47.8 Plus
Dvir\GJ11121-PA 258 GJ11121-PA 1..258 1..268 554 48.4 Plus
Dvir\GJ12931-PA 258 GJ12931-PA 1..258 1..268 554 48.4 Plus
Dvir\GJ12442-PA 264 GJ12442-PA 34..263 37..268 552 49.6 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-16 03:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK16622-PA 258 GK16622-PA 1..257 1..268 802 60.8 Plus
Dwil\GK17278-PA 266 GK17278-PA 1..265 1..268 611 48.3 Plus
Dwil\GK16899-PA 269 GK16899-PA 1..268 1..268 604 47.4 Plus
Dwil\GK17286-PA 260 GK17286-PA 1..260 1..268 581 48.7 Plus
Dwil\GK17284-PA 261 GK17284-PA 1..261 1..268 579 48 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-16 03:56:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE20861-PA 268 GE20861-PA 1..268 1..268 1360 95.1 Plus
Dyak\GE20862-PA 264 GE20862-PA 21..264 20..268 1084 80.3 Plus
Dyak\GE20860-PA 258 GE20860-PA 4..257 2..268 853 62.9 Plus
Dyak\GE21311-PA 264 GE21311-PA 1..263 1..268 593 49.3 Plus
Dyak\Ser4-PA 266 GE18715-PA 34..265 37..268 583 50.6 Plus