BDGP Sequence Production Resources |
Search the DGRC for RE54042
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 540 |
Well: | 42 |
Vector: | pFlc-1 |
Associated Gene/Transcript | mRpL39-RA |
Protein status: | RE54042.pep: gold |
Sequenced Size: | 1133 |
Gene | Date | Evidence |
---|---|---|
mRpL39-RA | 2011-07-22 | Manual selection by Sue Celniker |
1133 bp assembled on 2011-09-14
GenBank Submission: BT128888.1
> RE54042.complete GTGAACTGCATCCCTGAAGAGTATTTTGGTAATTTACCATGTCTGCGGCC ACCAAATTACATAAAACAAGCTGGTGCGCCCTGCGGCAGCTTCAACAATA CAGAACTAAGGCCAACTTTAGTGGCAGTTCTGCATCGTTAGCCAAGCGGA ATGACCTGTTCAACCAGGAGCAACGCCGTCAACGGGATGCAGTGGGTCGA ATCGATAAGATCGAGGTGCGGTATCTGGGACTTCCCGAGGATGTCACTCT GGTGATGAACGGCAACATCTCAACGCCCTTCAATTGCGCCCAGCATCTGA GTGAGGGGCACTGTAAGCGATCGGCACTGGCCTTGATCGACGGCAGTGTT CCCTGGGATATGCACAGACCCTTGCAGGAATCCTGTACTCTGCAGCTGCT TAACTTCCATGTTTCCGAGCCACATGTGGTCAACAAAGCATTCTGGCGCA CTTGCAGCTTTATGTTGGGAGCCGCCTTGAACCGCGCTTTCAAGCCGGAG GCCAATCTTCAGCTCCACAGCTTTCCTGGACCCAATATCAAATCAGGTAG CTTCGTACACGACATTGTGCTCCAAACCCAGAACTGGGAGCCAGGAAAAG AAGAGATGCGCGCCCTTTCGGCAGAGATGGTTAAACTGGCTGCTCAGGAT CTGCGCATCGAGCGTTTGGACGTCCAACAGGATCTGGCCCAGGAGATGTT CAAGGATTCCAAGTATAAGAGCGAACAGTTGCCCAGCATCTCGCAGCAGA CCAATGGAAGGGTCACCTTGTATCGCCTGGGTGATCATATCGACATCTCA CGCGGTCCAATGGTGGCGTCTACCAGCTTTTTGGGGAAATGCGTCATCTC GGCTGCCCACAAAGTTGCGGAGGAGGGTCCCTCTGGTGCTTTCTATCGCA TTCAGGGCGTTGCACTGCCGTCTGGCTTCCAACTGAATCATGTTGCATTT GGTGTATTGGAGGAGCGTTCTAAGAAACCTAGCCCCGCACGACTGCCCAA TGAACCATTTGAGGAACAACAACAACTGCAATTATCTTAAAACGTTCTTT AATATTTAAAACTATACTGTAAGTGTTAAAAAAGTAAATCATTAAAGAGC GTCCTAATTTGTTATAACAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr3L | 24539361 | chr3L | 14988252..14988694 | 980..538 | 2200 | 99.8 | Minus |
chr3L | 24539361 | chr3L | 14989033..14989358 | 436..111 | 1615 | 99.7 | Minus |
chr3L | 24539361 | chr3L | 14988053..14988190 | 1118..981 | 690 | 100 | Minus |
chr3L | 24539361 | chr3L | 14989609..14989719 | 111..1 | 555 | 100 | Minus |
chr3L | 24539361 | chr3L | 14988868..14988968 | 537..437 | 505 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28110227 | 3L | 14998180..14998622 | 980..538 | 2215 | 100 | Minus |
3L | 28110227 | 3L | 14998961..14999286 | 436..111 | 1615 | 99.7 | Minus |
3L | 28110227 | 3L | 14997973..14998118 | 1126..981 | 715 | 99.3 | Minus |
3L | 28110227 | 3L | 14999537..14999647 | 111..1 | 555 | 100 | Minus |
3L | 28110227 | 3L | 14998796..14998896 | 537..437 | 505 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
3L | 28103327 | 3L | 14991280..14991722 | 980..538 | 2215 | 100 | Minus |
3L | 28103327 | 3L | 14992061..14992386 | 436..111 | 1615 | 99.6 | Minus |
3L | 28103327 | 3L | 14991073..14991218 | 1126..981 | 715 | 99.3 | Minus |
3L | 28103327 | 3L | 14992637..14992747 | 111..1 | 555 | 100 | Minus |
3L | 28103327 | 3L | 14991896..14991996 | 537..437 | 505 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr3L | 14988053..14988190 | 981..1118 | 100 | <- | Minus |
chr3L | 14988252..14988694 | 538..980 | 99 | <- | Minus |
chr3L | 14988868..14988968 | 437..537 | 100 | <- | Minus |
chr3L | 14989033..14989357 | 112..436 | 99 | <- | Minus |
chr3L | 14989609..14989719 | 1..111 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 1..1002 | 39..1040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 1..1002 | 39..1040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 1..1002 | 39..1040 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 18..1135 | 1..1118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 20..1137 | 1..1118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
mRpL39-RA | 20..1137 | 1..1118 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14997981..14998118 | 981..1118 | 100 | <- | Minus |
3L | 14998180..14998622 | 538..980 | 100 | <- | Minus |
3L | 14998796..14998896 | 437..537 | 100 | <- | Minus |
3L | 14998961..14999285 | 112..436 | 99 | <- | Minus |
3L | 14999537..14999647 | 1..111 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14997981..14998118 | 981..1118 | 100 | <- | Minus |
3L | 14998180..14998622 | 538..980 | 100 | <- | Minus |
3L | 14998796..14998896 | 437..537 | 100 | <- | Minus |
3L | 14998961..14999285 | 112..436 | 99 | <- | Minus |
3L | 14999537..14999647 | 1..111 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14997981..14998118 | 981..1118 | 100 | <- | Minus |
3L | 14998180..14998622 | 538..980 | 100 | <- | Minus |
3L | 14998796..14998896 | 437..537 | 100 | <- | Minus |
3L | 14998961..14999285 | 112..436 | 99 | <- | Minus |
3L | 14999537..14999647 | 1..111 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_3L | 14991081..14991218 | 981..1118 | 100 | <- | Minus |
arm_3L | 14991280..14991722 | 538..980 | 100 | <- | Minus |
arm_3L | 14991896..14991996 | 437..537 | 100 | <- | Minus |
arm_3L | 14992061..14992385 | 112..436 | 99 | <- | Minus |
arm_3L | 14992637..14992747 | 1..111 | 100 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
3L | 14991280..14991722 | 538..980 | 100 | <- | Minus |
3L | 14991896..14991996 | 437..537 | 100 | <- | Minus |
3L | 14992061..14992385 | 112..436 | 99 | <- | Minus |
3L | 14992637..14992747 | 1..111 | 100 | Minus | |
3L | 14991081..14991218 | 981..1118 | 100 | <- | Minus |
Translation from 38 to 1039
> RE54042.pep MSAATKLHKTSWCALRQLQQYRTKANFSGSSASLAKRNDLFNQEQRRQRD AVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSEGHCKRSALALI DGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRA FKPEANLQLHSFPGPNIKSGSFVHDIVLQTQNWEPGKEEMRALSAEMVKL AAQDLRIERLDVQQDLAQEMFKDSKYKSEQLPSISQQTNGRVTLYRLGDH IDISRGPMVASTSFLGKCVISAAHKVAEEGPSGAFYRIQGVALPSGFQLN HVAFGVLEERSKKPSPARLPNEPFEEQQQLQLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF10636-PA | 333 | GF10636-PA | 1..333 | 1..333 | 1611 | 88.6 | Plus |
Dana\GF21565-PA | 749 | GF21565-PA | 128..336 | 78..299 | 227 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG13700-PA | 333 | GG13700-PA | 1..333 | 1..333 | 1745 | 96.7 | Plus |
Dere\GG23767-PA | 746 | GG23767-PA | 125..333 | 78..299 | 228 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH14833-PA | 332 | GH14833-PA | 1..332 | 1..333 | 1431 | 78.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL39-PA | 333 | CG17166-PA | 1..333 | 1..333 | 1728 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI13938-PA | 332 | GI13938-PA | 1..332 | 1..333 | 1426 | 79.6 | Plus |
Dmoj\GI17149-PA | 691 | GI17149-PA | 70..278 | 78..299 | 225 | 29.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL25954-PA | 334 | GL25954-PA | 4..334 | 3..333 | 1587 | 86.4 | Plus |
Dper\GL19239-PA | 754 | GL19239-PA | 133..341 | 78..299 | 233 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA14359-PA | 334 | GA14359-PA | 4..334 | 3..333 | 1587 | 86.4 | Plus |
Dpse\GA18821-PB | 754 | GA18821-PB | 133..341 | 78..299 | 233 | 30.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM24519-PA | 333 | GM24519-PA | 1..333 | 1..333 | 1783 | 99.1 | Plus |
Dsec\GM26732-PA | 747 | GM26732-PA | 126..334 | 78..299 | 228 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD12590-PA | 333 | GD12590-PA | 1..333 | 1..333 | 1783 | 99.1 | Plus |
Dsim\GD17572-PA | 144 | GD17572-PA | 1..144 | 190..333 | 755 | 99.3 | Plus |
Dsim\GD23818-PA | 747 | GD23818-PA | 126..334 | 78..299 | 228 | 28.6 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ13727-PA | 332 | GJ13727-PA | 1..332 | 1..333 | 1464 | 80.5 | Plus |
Dvir\GJ17652-PA | 745 | GJ17652-PA | 124..332 | 78..299 | 223 | 29.3 | Plus |
Translation from 38 to 1039
> RE54042.hyp MSAATKLHKTSWCALRQLQQYRTKANFSGSSASLAKRNDLFNQEQRRQRD AVGRIDKIEVRYLGLPEDVTLVMNGNISTPFNCAQHLSEGHCKRSALALI DGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRTCSFMLGAALNRA FKPEANLQLHSFPGPNIKSGSFVHDIVLQTQNWEPGKEEMRALSAEMVKL AAQDLRIERLDVQQDLAQEMFKDSKYKSEQLPSISQQTNGRVTLYRLGDH IDISRGPMVASTSFLGKCVISAAHKVAEEGPSGAFYRIQGVALPSGFQLN HVAFGVLEERSKKPSPARLPNEPFEEQQQLQLS*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
mRpL39-PA | 333 | CG17166-PA | 1..333 | 1..333 | 1728 | 100 | Plus |