BDGP Sequence Production Resources |
Search the DGRC for RE54049
Library: | RE |
Tissue Source: | Drosophila melanogaster embryo |
Created by: | Piero Carninci, RIKEN Genome Science Laboratory |
Date Registered: | 2000-10-23 |
Comments: | Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI |
Original Plate Number: | 540 |
Well: | 49 |
Vector: | pFlc-1 |
Associated Gene/Transcript | Reg-5-RA |
Protein status: | RE54049.pep: gold |
Preliminary Size: | 1646 |
Sequenced Size: | 1667 |
Gene | Date | Evidence |
---|---|---|
CG2928 | 2001-12-14 | Blastp of sequenced clone |
CG2928 | 2002-01-01 | Sim4 clustering to Release 2 |
CG2928 | 2003-01-01 | Sim4 clustering to Release 3 |
Reg-5 | 2008-04-29 | Release 5.5 accounting |
Reg-5 | 2008-08-15 | Release 5.9 accounting |
Reg-5 | 2008-12-18 | 5.12 accounting |
1667 bp (1667 high quality bases) assembled on 2001-12-14
GenBank Submission: AY071459
> RE54049.complete TGGGAGACGACTCACTGACATCGCCGCGATCGGTTGTTCGACATAGTACT GCAAGATTATAGTGCTCGCTCCGTTTCCGTTTCGCTTGGAATTCGCCGTT TTCGTGATCGACTGGTGGGCGCCCCTCTCCCTAGACCGACTGACTCCCCC ATCTTGCCGAGAAACCGATGTGTGAAACAAGCTTTTGCGTTTCAAGCTGA GACACACGTACACCCGAAAACAGCGATAATACGAATTGGCCACGCTCGTT GTTTGGTTAATTCAATTAAGTGCGTCGGACAGAAGAAAGCCACTTGGCTA GCCACCGAAACCAAGTGATAATCTATCAAGCCGCCACAAAAGCGCTTTTA TTGGGCCCTAAAAAAAAAGAAAGTCGCCACACGAAGGTTACACAACCGAA CCGTGCAATTGACCCACGGAACACGGATCACAGATCACGGAGCACGAATC CCCTGAACTCTCCGTGTAGTGCGGAGTACGCAACATAAAAGCAGCAACGA CGCCATGACGACTGCGGCGAAAGTAATCTTGGCCTGCTGCCTGCTGGGCG CCTTCCACATTCAGATCAGCTCGTCATCGGCCATTCCCATCTGGGAGTTC CTGACCCGCAACGAGAAGATGTCCCACCTCTACTCAACATTCGCTCAATT GGTAAGCGTGCACTGCAAGTCAACAGCCGCCGTCGGAGGCCTCCCAGTGA ACCAGTGCAAGCACAACCTGCTCGGTTACGGGTCCGCCAAGCTGCAGACG CTCTCCGACGTACAGCTGGAGGCACTAGATCCGTATCAGCGCGATGCCAA CGAGCTGATCTGGTCATCGATTATGGGGGACCATCCGAGCGGAGCCAGCC TGGTGACAACGAGGCAGCCGCTCCAACAGCCCCTGCCAACTCCTCCTGCG TCCTCTCTGATCATCCTAACGCGCCAGCAACTTCCGCACGGAGCATCCCA TGCCCACCCCATCCAGAGCTCCGGCTCCGCCACCAATCCAATCTTCGAGA GCGGCGAGCAGAAGCACAAATACGCCATGGACATGGACAAGGCCTACGGC TACGGGCCGCAGTCCAGCAGTGAGCTCCCAATGGCCGCCGCACTGACTTC AGAACCGTCCAAAAGATTCCTCACCGGACCTTTGGTGATCCGGGTGCGAC CCGATGGCTCCCCGGTGGAGGAGGACAAGATGATGCCACTGCCGCGGGAC GAAGACCTGCCCTACTTTCATCTTGGTCTGGCCGCCGCTCAGCCCAACAG GCACCGCAAGATCGCCACAATCAGCTCCTTAAAGCAGCAGCACTTCGCCT CTATCCTGCAGAGCGACCTCCAGCCACCCCACCAGACGCAGAGGCGTCTG TTCCGCCAGCAACAGGCGTAAGATCGCGGTCAGAGGATCCGCAGGCCTAG ACCTAAGTCCTTGTGTGAATGTGATAGAGCAGATGAGGAGATCCTGCATC ATAGAGTGCGAGAGTGAACGTGTGAGTCTTCTAGTTGTAGCCGTTTGAGG AGTTTTCTTGAATGCACTTGAGCTTTAATGGAATTTCGTATCGTATTCGT TTAAGTTTTTTTAATTTTATTTATTCGCGTGCATTAGTCGTAAGATCACA TAGAGATTCTTGAGTAATAAACCGCATGATGATTATCATTGTTACGAACG CAAAAAAAAAAAAAAAA
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
chr2R | 21145070 | chr2R | 20673950..20674791 | 1650..809 | 4180 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 20678733..20679346 | 618..5 | 3055 | 99.8 | Minus |
chr2R | 21145070 | chr2R | 20674920..20675111 | 808..617 | 960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25286936 | 2R | 24788009..24788850 | 1650..809 | 4210 | 100 | Minus |
2R | 25286936 | 2R | 24792791..24793404 | 618..5 | 3055 | 99.8 | Minus |
2R | 25286936 | 2R | 24788979..24789170 | 808..617 | 960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
2R | 25260384 | 2R | 24789208..24790049 | 1650..809 | 4210 | 100 | Minus |
2R | 25260384 | 2R | 24793990..24794603 | 618..5 | 3055 | 99.8 | Minus |
2R | 25260384 | 2R | 24790178..24790369 | 808..617 | 960 | 100 | Minus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Ivk | 5402 | Ivk IVK 5402bp | 1578..1674 | 1575..1483 | 113 | 62.9 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
chr2R | 20673949..20674791 | 809..1651 | 99 | <- | Minus |
chr2R | 20674920..20675109 | 619..808 | 100 | <- | Minus |
chr2R | 20678733..20679348 | 1..618 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..867 | 505..1371 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..867 | 505..1371 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..867 | 505..1371 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..867 | 505..1371 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..867 | 505..1371 | 100 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..1648 | 4..1651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..1648 | 4..1651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 2..1652 | 1..1651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 1..1648 | 4..1651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
Reg-5-RA | 2..1652 | 1..1651 | 99 | Plus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24788008..24788850 | 809..1651 | 99 | <- | Minus |
2R | 24788979..24789168 | 619..808 | 100 | <- | Minus |
2R | 24792791..24793406 | 1..618 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24788008..24788850 | 809..1651 | 99 | <- | Minus |
2R | 24788979..24789168 | 619..808 | 100 | <- | Minus |
2R | 24792791..24793406 | 1..618 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24788008..24788850 | 809..1651 | 99 | <- | Minus |
2R | 24788979..24789168 | 619..808 | 100 | <- | Minus |
2R | 24792791..24793406 | 1..618 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
arm_2R | 20675531..20676373 | 809..1651 | 99 | <- | Minus |
arm_2R | 20676502..20676691 | 619..808 | 100 | <- | Minus |
arm_2R | 20680314..20680929 | 1..618 | 99 | Minus |
Subject | Subject Range | Query Range | Percent | Splice | Strand |
---|---|---|---|---|---|
2R | 24790196..24790385 | 619..808 | 100 | <- | Minus |
2R | 24789225..24790067 | 809..1651 | 99 | <- | Minus |
2R | 24794008..24794623 | 1..618 | 99 | Minus |
Translation from 504 to 1370
> RE54049.pep MTTAAKVILACCLLGAFHIQISSSSAIPIWEFLTRNEKMSHLYSTFAQLV SVHCKSTAAVGGLPVNQCKHNLLGYGSAKLQTLSDVQLEALDPYQRDANE LIWSSIMGDHPSGASLVTTRQPLQQPLPTPPASSLIILTRQQLPHGASHA HPIQSSGSATNPIFESGEQKHKYAMDMDKAYGYGPQSSSELPMAAALTSE PSKRFLTGPLVIRVRPDGSPVEEDKMMPLPRDEDLPYFHLGLAAAQPNRH RKIATISSLKQQHFASILQSDLQPPHQTQRRLFRQQQA*
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dana\GF11541-PA | 271 | GF11541-PA | 1..271 | 1..287 | 1133 | 79 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dere\GG19888-PA | 286 | GG19888-PA | 1..286 | 1..288 | 1361 | 94.4 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dgri\GH21535-PA | 298 | GH21535-PA | 1..283 | 1..288 | 948 | 65.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Reg-5-PA | 288 | CG2928-PA | 1..288 | 1..288 | 1494 | 100 | Plus |
Reg-5-PB | 182 | CG2928-PB | 1..182 | 107..288 | 947 | 100 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dmoj\GI19507-PA | 295 | GI19507-PA | 6..283 | 3..287 | 940 | 65.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dper\GL17695-PA | 298 | GL17695-PA | 1..298 | 1..288 | 982 | 70.1 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dpse\GA15525-PA | 298 | GA15525-PA | 1..298 | 1..288 | 976 | 69.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsec\GM11788-PA | 288 | GM11788-PA | 1..288 | 1..288 | 1464 | 96.2 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dsim\GD24916-PA | 288 | GD24916-PA | 1..288 | 1..288 | 1471 | 96.5 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dvir\GJ21077-PA | 310 | GJ21077-PA | 1..290 | 1..287 | 939 | 66.8 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dwil\GK21646-PA | 303 | GK21646-PA | 1..285 | 1..285 | 1018 | 71.3 | Plus |
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
---|---|---|---|---|---|---|---|
Dyak\GE11412-PA | 288 | GE11412-PA | 1..288 | 1..288 | 1351 | 93.8 | Plus |
Translation from 504 to 1370
> RE54049.hyp MTTAAKVILACCLLGAFHIQISSSSAIPIWEFLTRNEKMSHLYSTFAQLV SVHCKSTAAVGGLPVNQCKHNLLGYGSAKLQTLSDVQLEALDPYQRDANE LIWSSIMGDHPSGASLVTTRQPLQQPLPTPPASSLIILTRQQLPHGASHA HPIQSSGSATNPIFESGEQKHKYAMDMDKAYGYGPQSSSELPMAAALTSE PSKRFLTGPLVIRVRPDGSPVEEDKMMPLPRDEDLPYFHLGLAAAQPNRH RKIATISSLKQQHFASILQSDLQPPHQTQRRLFRQQQA*