Clone RE54151 Report

Search the DGRC for RE54151

Clone and Library Details

Library:RE
Tissue Source:Drosophila melanogaster embryo
Created by:Piero Carninci, RIKEN Genome Science Laboratory
Date Registered:2000-10-23
Comments:Average reported size from P Carninci is 2.3kb. Directionally cloned:5 end at XhoI, 3 end at BamHI
Original Plate Number:541
Well:51
Vector:pFlc-1
Associated Gene/TranscriptCG8366-RA
Protein status:RE54151.pep: gold
Preliminary Size:1368
Sequenced Size:1486

Associated Genes

Associations are from manual ordering of a clone or by a periodic analysis.
Gene Date Evidence
CG8366 2002-01-01 Sim4 clustering to Release 2
CG8366 2002-02-22 Blastp of sequenced clone
CG8366 2003-01-01 Sim4 clustering to Release 3
CG8366 2008-04-29 Release 5.5 accounting
CG8366 2008-08-15 Release 5.9 accounting
CG8366 2008-12-18 5.12 accounting

Clone Sequence Records

RE54151.complete Sequence

1486 bp (1486 high quality bases) assembled on 2002-02-22

GenBank Submission: AY084180

> RE54151.complete
AGTTGTGGCCCAATGTTTATTTTTAGCACACCATCTAATTTTCTACTTCT
TGTACTCAAATTTTGGTTAAAACAAAATGAGGGGCATGATAATTGTGCCC
ATGGACCTGGAACCCGGCTTCCGCAAAGCAGACATACACAATATACCCGC
TTTGAACAGCGGAATGGTGTACAATTTTTGTCTATCCGGCGCATCTGAGA
AATCAAAACAAATACCAACGAATAGATGTGATCTCCTCACGGATTACGTC
CAGGTGCGCAGACATGGCGACGTGTGCGAACTCAAGGGACTCGTGTTTTC
TGCCACCGACTTCGCCAACACGGTAACTCACGCCAATGTATCGCTTAAGA
TCGTCGAAAGTGCTCAGATGATCATGGACGGTCAATGCAGCCTGTGCACT
GCAGCATGTACTTGTGCCCACATCGTGGCCTTCACCTTCTGGCTGCTAAA
CAAGAGCACAGATCGAAATCCCTCGGCTGTGGTGGAGTTTTGGGGCCACG
AGTTGGAAAATCTGGTGCAACCGGAGCCCACAACTGCTACTCGAATATGT
GATATAATTCCCAAGGATGATGTGCGAATGGAAAGCGAACTAAACTCGAA
AGAACTTAGCGCCAGCGAGGGAGAGGCTTTCCTAGTGACCATTCTGAATG
AACTGGCCGACTGTGGCAGGGACTCGGCGCTCTACCGGCAATGTGTGGAG
ACCACCGATGAGTTCGAGCCCATGTTCGTACACCATGTGCTGCTCCGAGC
AAATGAGTACAATGTCGTCGATCCGTCCAGCTATGTGCAACACATGGAGG
CACAGGCACATACGGGTATTATCGAAAGTCTGTACGAGGCAACGCGAAGC
AAATACAAATCCCGATTGTGGGTGGAGGTACAGTATATGCGCATCCGTTG
CTCCATGATGCACATGATCATAAGCCGCAAAACCTCTGATGATGACGATC
AAATCTTCAATATGATGTTTTGCAGAGGACGTGACAAGAATAACGAGGAT
CGGGTGCAGCAGAAGGAGCACAAGCGCTTCATATTGAAACAGACTGAGAA
GCTGGAGAACAAGAACTACTTAGAATGCGGTCTGATCCTGCACGAGAACT
TCCCCTTCCTGTGCGCCGCCCCTGATGGCATCACGGACGATCACATTGTC
GAAATCAAATCACCAAAGACTGACGAGGACTTCGAGAAGTACCTCGAGGC
ACGCGAATCTATTGCACCCAAGTACATGGCCCAAATACAAATCCAGATGT
TTGCGGCGAATGTTAAAAAGGCGCTCTACTGCGTGCTAAGTCCCACGTTC
GAGAGCAACGGAGCACTACACTACGTTTGGGTACAGGCGGATCCGGAATT
CGTTAGCAGTTTGCTGAGCATGGCTGAAGACTTCTGGCGGGACGTTGTCT
TTCCCCGCCTATTGAATATCTACCCCCAGTGCCCAGGTCAATAAATACAT
ACACATTCACTGTGCTGCTCAAAAAAAAAAAAAAAA

RE54151.complete Blast Records

Blast to MB8.fasta performed 2010-07-15 19:25:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-RA 1508 CG8366-RA 11..1476 4..1469 7315 99.9 Plus
Strn-Mlck.m 4555 Strn-Mlck.m 45..254 213..4 1050 100 Minus
Strn-Mlck.j 4558 Strn-Mlck.j 45..254 213..4 1050 100 Minus
Blast to d_melanogaster_OreR.fa performed 2019-03-15 22:47:35
Subject Length Description Subject Range Query Range Score Percent Strand
chr2R 21145070 chr2R 11842843..11843904 408..1469 5295 99.9 Plus
chr2R 21145070 chr2R 11842314..11842523 4..213 1050 100 Plus
chr2R 21145070 chr2R 11842592..11842787 214..409 980 100 Plus
Blast to dmel-all-all_noncoding-r5.12.fasta performed on 2010-04-22 21:02:47 has no hits.
Blast to na_all.dmel.RELEASE6 performed 2019-03-15 22:47:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15955574..15956635 408..1469 5295 99.9 Plus
2R 25286936 2R 15955045..15955254 4..213 1050 100 Plus
2R 25286936 2R 15955323..15955518 214..409 980 100 Plus
Blast to na_arms.dmel.RELEASE6 performed 2011-12-12 20:54:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25260384 2R 15956773..15957834 408..1469 5295 99.9 Plus
2R 25260384 2R 15956244..15956453 4..213 1050 100 Plus
2R 25260384 2R 15956522..15956717 214..409 980 100 Plus
Blast to na_te.dros performed on 2019-03-15 22:47:34 has no hits.

RE54151.complete Sim4 Records

Sim4 to d_melanogaster_OreR.fa performed 2019-03-15 22:48:29 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
chr2R 11842311..11842523 1..213 99 -> Plus
chr2R 11842592..11842785 214..407 100 -> Plus
chr2R 11842843..11843904 408..1470 99   Plus
Sim4 to dmel-all-CDS-r5.12.fasta performed 2008-12-08 20:23:06 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1368 77..1444 99   Plus
Sim4 to dmel-all-CDS-r5.32.fasta performed 2011-03-16 18:37:26 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1368 77..1444 99   Plus
Sim4 to dmel-all-CDS-r5.52.fasta performed 2013-08-04 06:32:25 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1368 77..1444 99   Plus
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 19:08:18 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1368 77..1444 99   Plus
Sim4 to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:35:04 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1368 77..1444 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-10 22:02:43 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1469 1..1470 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-16 18:37:26 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1469 1..1470 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 06:32:25 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 3..1471 1..1470 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 19:08:18 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 1..1469 1..1470 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:35:04 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
CG8366-RA 3..1471 1..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:29 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15955042..15955254 1..213 99 -> Plus
2R 15955323..15955516 214..407 100 -> Plus
2R 15955574..15956635 408..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:29 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15955042..15955254 1..213 99 -> Plus
2R 15955323..15955516 214..407 100 -> Plus
2R 15955574..15956635 408..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2019-03-15 22:48:29 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15955042..15955254 1..213 99 -> Plus
2R 15955323..15955516 214..407 100 -> Plus
2R 15955574..15956635 408..1470 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 06:32:25 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11842547..11842759 1..213 99 -> Plus
arm_2R 11842828..11843021 214..407 100 -> Plus
arm_2R 11843079..11844140 408..1470 99   Plus
Sim4 to na_arms.dmel.RELEASE6 performed 2011-12-09 15:42:22 Download gff for RE54151.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15956522..15956715 214..407 100 -> Plus
2R 15956241..15956453 1..213 99 -> Plus
2R 15956773..15957834 408..1470 99   Plus

RE54151.pep Sequence

Translation from 76 to 1443

> RE54151.pep
MRGMIIVPMDLEPGFRKADIHNIPALNSGMVYNFCLSGASEKSKQIPTNR
CDLLTDYVQVRRHGDVCELKGLVFSATDFANTVTHANVSLKIVESAQMIM
DGQCSLCTAACTCAHIVAFTFWLLNKSTDRNPSAVVEFWGHELENLVQPE
PTTATRICDIIPKDDVRMESELNSKELSASEGEAFLVTILNELADCGRDS
ALYRQCVETTDEFEPMFVHHVLLRANEYNVVDPSSYVQHMEAQAHTGIIE
SLYEATRSKYKSRLWVEVQYMRIRCSMMHMIISRKTSDDDDQIFNMMFCR
GRDKNNEDRVQQKEHKRFILKQTEKLENKNYLECGLILHENFPFLCAAPD
GITDDHIVEIKSPKTDEDFEKYLEARESIAPKYMAQIQIQMFAANVKKAL
YCVLSPTFESNGALHYVWVQADPEFVSSLLSMAEDFWRDVVFPRLLNIYP
QCPGQ*

RE54151.pep Blast Records

Blast to dana-all-translation-r1.3.fasta performed 2019-03-15 23:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dana\GF11550-PA 451 GF11550-PA 1..451 1..451 1969 76.5 Plus
Blast to dere-all-translation-r1.3.fasta performed 2019-03-15 23:57:11
Subject Length Description Subject Range Query Range Score Percent Strand
Dere\GG20555-PA 453 GG20555-PA 1..450 1..450 2258 90.9 Plus
Blast to dgri-all-translation-r1.3.fasta performed 2019-03-15 23:57:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dgri\GH22056-PA 447 GH22056-PA 1..445 1..451 1735 68.3 Plus
Blast to dmel-all-translation-r6.23.fasta performed 2019-03-25 11:04:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-PA 455 CG8366-PA 1..455 1..455 2407 100 Plus
Blast to dmoj-all-translation-r1.3.fasta performed 2019-03-15 23:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dmoj\GI19141-PA 450 GI19141-PA 1..448 1..451 1758 69 Plus
Blast to dper-all-translation-r1.3.fasta performed 2019-03-15 23:57:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dper\GL20656-PA 456 GL20656-PA 1..451 1..451 1834 70.3 Plus
Blast to dpse-all-translation-r3.2.fasta performed 2019-03-15 23:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dpse\GA21023-PA 456 GA21023-PA 1..451 1..451 1839 70.5 Plus
Blast to dsec-all-translation-r1.3.fasta performed 2019-03-15 23:57:14
Subject Length Description Subject Range Query Range Score Percent Strand
Dsec\GM21648-PA 455 GM21648-PA 1..455 1..455 2405 96.7 Plus
Blast to dsim-all-translation-r1.4.fasta performed 2019-03-15 23:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dsim\GD11147-PA 455 GD11147-PA 1..455 1..455 2410 96.7 Plus
Blast to dvir-all-translation-r1.2.fasta performed 2019-03-15 23:57:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\GJ22274-PA 450 GJ22274-PA 1..448 1..451 1763 68.9 Plus
Blast to dwil-all-translation-r1.3.fasta performed 2019-03-15 23:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dwil\GK22194-PA 448 GK22194-PA 1..446 1..451 1732 68.1 Plus
Blast to dyak-all-translation-r1.3.fasta performed 2019-03-15 23:57:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\GE11740-PA 453 GE11740-PA 1..451 1..451 2302 92.9 Plus

RE54151.hyp Sequence

Translation from 76 to 1443

> RE54151.hyp
MRGMIIVPMDLEPGFRKADIHNIPALNSGMVYNFCLSGASEKSKQIPTNR
CDLLTDYVQVRRHGDVCELKGLVFSATDFANTVTHANVSLKIVESAQMIM
DGQCSLCTAACTCAHIVAFTFWLLNKSTDRNPSAVVEFWGHELENLVQPE
PTTATRICDIIPKDDVRMESELNSKELSASEGEAFLVTILNELADCGRDS
ALYRQCVETTDEFEPMFVHHVLLRANEYNVVDPSSYVQHMEAQAHTGIIE
SLYEATRSKYKSRLWVEVQYMRIRCSMMHMIISRKTSDDDDQIFNMMFCR
GRDKNNEDRVQQKEHKRFILKQTEKLENKNYLECGLILHENFPFLCAAPD
GITDDHIVEIKSPKTDEDFEKYLEARESIAPKYMAQIQIQMFAANVKKAL
YCVLSPTFESNGALHYVWVQADPEFVSSLLSMAEDFWRDVVFPRLLNIYP
QCPGQ*

RE54151.hyp Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 16:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG8366-PA 455 CG8366-PA 1..455 1..455 2407 100 Plus